data_6AWP # _model_server_result.job_id zZF-TntAz9x5SZ08AbNCag _model_server_result.datetime_utc '2024-10-13 17:12:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6awp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6AWP # _exptl.entry_id 6AWP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.335 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Fluvoxamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AWP _cell.length_a 129.49 _cell.length_b 163.86 _cell.length_c 140.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AWP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_657 -x+1,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 129.49 0 352.375 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 144 A ASN 217 1_555 G C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A O GLY 21 A GLY 94 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc2 A O ALA 23 A ALA 96 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A O VAL 24 A VAL 97 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc4 A OD1 ASN 28 A ASN 101 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc5 A O SER 263 A SER 336 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc6 A OG SER 263 A SER 336 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc7 A OD1 ASN 295 A ASN 368 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc8 A O LEU 361 A LEU 434 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc9 A OD1 ASP 364 A ASP 437 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc10 A OD2 ASP 364 A ASP 437 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? metalc ? metalc11 A OG SER 365 A SER 438 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? metalc ? metalc12 J NA NA . A NA 707 1_555 K O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'C15 H21 F3 N2 O2' _chem_comp.formula_weight 318.335 _chem_comp.id FVX _chem_comp.mon_nstd_flag . _chem_comp.name Fluvoxamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-[({(1E)-5-methoxy-1-[4-(trifluoromethyl)phenyl]pentylidene}amino)oxy]ethanamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N12 C11 FVX sing 160 n n C11 C10 FVX sing 161 n n C10 O9 FVX sing 162 n n O9 N8 FVX sing 163 n n N8 C7 FVX doub 164 e n C7 C13 FVX sing 165 n n C7 C6 FVX sing 166 n n C14 C13 FVX doub 167 n y C14 C15 FVX sing 168 n y C13 C18 FVX sing 169 n y C15 C16 FVX doub 170 n y C4 C5 FVX sing 171 n n C4 C3 FVX sing 172 n n C6 C5 FVX sing 173 n n C18 C17 FVX doub 174 n y C16 C17 FVX sing 175 n y C16 C19 FVX sing 176 n n F21 C19 FVX sing 177 n n C3 O2 FVX sing 178 n n F20 C19 FVX sing 179 n n C19 F22 FVX sing 180 n n O2 C1 FVX sing 181 n n C1 H1 FVX sing 182 n n C1 H2 FVX sing 183 n n C1 H3 FVX sing 184 n n C3 H4 FVX sing 185 n n C3 H5 FVX sing 186 n n C4 H6 FVX sing 187 n n C4 H7 FVX sing 188 n n C5 H8 FVX sing 189 n n C5 H9 FVX sing 190 n n C6 H10 FVX sing 191 n n C6 H11 FVX sing 192 n n C10 H12 FVX sing 193 n n C10 H13 FVX sing 194 n n C11 H14 FVX sing 195 n n C11 H15 FVX sing 196 n n N12 H16 FVX sing 197 n n N12 H17 FVX sing 198 n n C14 H19 FVX sing 199 n n C15 H20 FVX sing 200 n n C17 H21 FVX sing 201 n n C18 H22 FVX sing 202 n n # _atom_sites.entry_id 6AWP _atom_sites.fract_transf_matrix[1][1] 0.007723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FVX A 1 701 700 FVX FVX . E 5 NAG A 1 702 701 NAG NAG . F 6 CLR A 1 703 702 CLR CLR . G 5 NAG A 1 704 704 NAG NAG . H 7 CL A 1 705 706 CL CL . I 8 NA A 1 706 707 NA NA . J 8 NA A 1 707 708 NA NA . K 9 HOH A 1 801 709 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FVX . . . D 4 35.825 180.47 143.331 1 157.72 ? C1 FVX 701 A 1 HETATM 2 O O2 FVX . . . D 4 36.053 181.785 143.755 1 220.54 ? O2 FVX 701 A 1 HETATM 3 C C3 FVX . . . D 4 36.319 182.675 142.713 1 229.78 ? C3 FVX 701 A 1 HETATM 4 C C4 FVX . . . D 4 35.136 183.626 142.567 1 234.11 ? C4 FVX 701 A 1 HETATM 5 C C5 FVX . . . D 4 35.18 184.261 141.182 1 215.01 ? C5 FVX 701 A 1 HETATM 6 C C6 FVX . . . D 4 33.965 185.177 141.01 1 207.04 ? C6 FVX 701 A 1 HETATM 7 C C7 FVX . . . D 4 33.833 186.115 142.212 1 221.5 ? C7 FVX 701 A 1 HETATM 8 N N8 FVX . . . D 4 34.682 187.003 142.426 1 229.15 ? N8 FVX 701 A 1 HETATM 9 O O9 FVX . . . D 4 35.782 187.162 141.576 1 240.18 ? O9 FVX 701 A 1 HETATM 10 C C10 FVX . . . D 4 35.764 188.45 141.046 1 218.24 ? C10 FVX 701 A 1 HETATM 11 C C11 FVX . . . D 4 36.463 188.43 139.696 1 200.87 ? C11 FVX 701 A 1 HETATM 12 N N12 FVX . . . D 4 37.76 189.069 139.838 1 204.72 ? N12 FVX 701 A 1 HETATM 13 C C13 FVX . . . D 4 32.652 185.99 143.169 1 211.35 ? C13 FVX 701 A 1 HETATM 14 C C14 FVX . . . D 4 31.776 184.919 143.058 1 204.79 ? C14 FVX 701 A 1 HETATM 15 C C15 FVX . . . D 4 30.703 184.816 143.932 1 197.57 ? C15 FVX 701 A 1 HETATM 16 C C16 FVX . . . D 4 30.504 185.78 144.911 1 185.7 ? C16 FVX 701 A 1 HETATM 17 C C17 FVX . . . D 4 31.381 186.851 145.017 1 176.65 ? C17 FVX 701 A 1 HETATM 18 C C18 FVX . . . D 4 32.454 186.957 144.145 1 193.31 ? C18 FVX 701 A 1 HETATM 19 C C19 FVX . . . D 4 29.316 185.665 145.871 1 189.19 ? C19 FVX 701 A 1 HETATM 20 F F20 FVX . . . D 4 28.808 186.91 146.104 1 190.38 ? F20 FVX 701 A 1 HETATM 21 F F21 FVX . . . D 4 28.35 184.875 145.312 1 177.54 ? F21 FVX 701 A 1 HETATM 22 F F22 FVX . . . D 4 29.721 185.132 147.06 1 193.86 ? F22 FVX 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #