data_6AWQ # _model_server_result.job_id QJ-zBfBUKDsNdCVDn_K8IA _model_server_result.datetime_utc '2024-10-13 19:16:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6awq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6AWQ # _exptl.entry_id 6AWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.23 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AWQ _cell.length_a 130.55 _cell.length_b 165.9 _cell.length_c 142.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_657 -x+1,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 130.55 0 356.65 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A OH TYR 48 A TYR 121 1_555 H CL CL . A CL 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? covale ? covale2 A ND2 ASN 135 A ASN 208 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 144 A ASN 217 1_555 G C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A O GLY 21 A GLY 94 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc2 A O VAL 24 A VAL 97 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 A OD1 ASN 28 A ASN 101 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc4 A O SER 263 A SER 336 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc5 A OG SER 263 A SER 336 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc6 A O LEU 361 A LEU 434 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc7 A OD1 ASP 364 A ASP 437 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc8 A OG SER 365 A SER 438 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? # _chem_comp.formula 'C17 H17 Cl2 N' _chem_comp.formula_weight 306.23 _chem_comp.id SRE _chem_comp.mon_nstd_flag . _chem_comp.name (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Sertraline # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL19 C16 SRE sing 395 n n C16 C17 SRE sing 396 n y C15 C16 SRE doub 397 n y C15 C14 SRE sing 398 n y CL20 C15 SRE sing 399 n n C17 C18 SRE doub 400 n y C17 H17 SRE sing 401 n n C18 H18 SRE sing 402 n n C13 C18 SRE sing 403 n y C13 C4 SRE sing 404 n n C14 C13 SRE doub 405 n y C14 H14 SRE sing 406 n n C4 C3 SRE sing 407 n n C4 C5 SRE sing 408 n n C4 H4 SRE sing 409 n n C5 C10 SRE sing 410 n y C6 C5 SRE doub 411 n y C6 C7 SRE sing 412 n y C6 H6 SRE sing 413 n n C7 C8 SRE doub 414 n y C7 H7 SRE sing 415 n n C8 C9 SRE sing 416 n y C8 H8 SRE sing 417 n n C9 H9 SRE sing 418 n n C10 C9 SRE doub 419 n y C10 C1 SRE sing 420 n n C1 N11 SRE sing 421 n n C1 H1 SRE sing 422 n n N11 C12 SRE sing 423 n n C12 H12 SRE sing 424 n n C12 H12A SRE sing 425 n n C2 C1 SRE sing 426 n n C2 H2 SRE sing 427 n n C2 H2A SRE sing 428 n n C3 C2 SRE sing 429 n n C3 H3 SRE sing 430 n n C3 H3A SRE sing 431 n n N11 H16 SRE sing 432 n n C12 H171 SRE sing 433 n n # _atom_sites.entry_id 6AWQ _atom_sites.fract_transf_matrix[1][1] 0.00766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SRE A 1 701 700 SRE SRE . E 5 NAG A 1 702 701 NAG NAG . F 6 CLR A 1 703 702 CLR CLR . G 5 NAG A 1 704 704 NAG NAG . H 7 CL A 1 705 706 CL CL . I 8 NA A 1 706 707 NA NA . J 8 NA A 1 707 708 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL19 SRE . . . D 4 28.666 186.07 145.599 1 234.3 ? CL19 SRE 701 A 1 HETATM 2 C C16 SRE . . . D 4 30.318 186.736 145.755 1 233.78 ? C16 SRE 701 A 1 HETATM 3 C C15 SRE . . . D 4 30.672 187.468 146.88 1 220.14 ? C15 SRE 701 A 1 HETATM 4 CL CL20 SRE . . . D 4 29.48 187.748 148.179 1 221.64 ? CL20 SRE 701 A 1 HETATM 5 C C17 SRE . . . D 4 31.253 186.523 144.752 1 223.18 ? C17 SRE 701 A 1 HETATM 6 C C18 SRE . . . D 4 32.534 187.038 144.878 1 197 ? C18 SRE 701 A 1 HETATM 7 C C13 SRE . . . D 4 32.884 187.767 146.004 1 195.95 ? C13 SRE 701 A 1 HETATM 8 C C14 SRE . . . D 4 31.952 187.984 147.003 1 198.99 ? C14 SRE 701 A 1 HETATM 9 C C4 SRE . . . D 4 34.325 188.357 146.158 1 200.03 ? C4 SRE 701 A 1 HETATM 10 C C5 SRE . . . D 4 35.402 187.288 145.621 1 218.13 ? C5 SRE 701 A 1 HETATM 11 C C6 SRE . . . D 4 35.662 186.114 146.324 1 228.12 ? C6 SRE 701 A 1 HETATM 12 C C7 SRE . . . D 4 36.604 185.208 145.838 1 239.32 ? C7 SRE 701 A 1 HETATM 13 C C8 SRE . . . D 4 37.293 185.479 144.645 1 233.62 ? C8 SRE 701 A 1 HETATM 14 C C9 SRE . . . D 4 37.038 186.653 143.943 1 210.55 ? C9 SRE 701 A 1 HETATM 15 C C10 SRE . . . D 4 36.096 187.56 144.423 1 211.27 ? C10 SRE 701 A 1 HETATM 16 C C1 SRE . . . D 4 35.796 188.904 143.627 1 195.68 ? C1 SRE 701 A 1 HETATM 17 N N11 SRE . . . D 4 35.622 188.542 142.193 1 205.2 ? N11 SRE 701 A 1 HETATM 18 C C12 SRE . . . D 4 34.385 187.801 142.017 1 194.66 ? C12 SRE 701 A 1 HETATM 19 C C2 SRE . . . D 4 34.614 189.751 144.044 1 194.02 ? C2 SRE 701 A 1 HETATM 20 C C3 SRE . . . D 4 34.317 189.715 145.531 1 199.93 ? C3 SRE 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #