data_6AWT # _model_server_result.job_id h7-b8VpJpqUzaTzRk6nWdg _model_server_result.datetime_utc '2024-12-19 12:14:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6awt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":202}' # _entry.id 6AWT # _exptl.entry_id 6AWT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.268 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AWT _cell.length_a 55.451 _cell.length_b 62.507 _cell.length_c 186.585 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,O 1 1 B,H,I,P 2 1 C,J,K,L,Q 3 1 D,M,N,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 30 A PRO 31 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc2 A O ILE 33 A ILE 34 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc3 A O ASP 34 A ASP 35 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? metalc ? metalc4 A O VAL 36 A VAL 37 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc5 G NA NA . A NA 603 1_555 O O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc6 G NA NA . A NA 603 1_555 O O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc7 B O PRO 30 B PRO 31 1_555 I NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc8 B O ILE 33 B ILE 34 1_555 I NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 B O ASP 34 B ASP 35 1_555 I NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? metalc ? metalc10 B O VAL 36 B VAL 37 1_555 I NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc11 I NA NA . B NA 202 1_555 P O HOH . B HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc12 I NA NA . B NA 202 1_555 P O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc13 C O PRO 30 C PRO 31 1_555 L NA NA . C NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc14 C O ILE 33 C ILE 34 1_555 L NA NA . C NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc15 C O VAL 36 C VAL 37 1_555 L NA NA . C NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc16 L NA NA . C NA 203 1_555 Q O HOH . C HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc17 L NA NA . C NA 203 1_555 Q O HOH . C HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? # _chem_comp.formula 'C15 H14 O6' _chem_comp.formula_weight 290.268 _chem_comp.id 28E _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Epicatechin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAG CAY 28E sing 1 n n CAY CAK 28E doub 2 n y CAY CBD 28E sing 3 n y CAK CAT 28E sing 4 n y CAP CBD 28E sing 5 n n CAP CBE 28E sing 6 n n CBD CBC 28E doub 7 n y CAT OAB 28E sing 8 n n CAT CAN 28E doub 9 n y OAQ CBE 28E sing 10 n n CBE CBF 28E sing 11 n n CBC CAN 28E sing 12 n y CBC OAR 28E sing 13 n n CBF OAR 28E sing 14 n n CBF CBA 28E sing 15 n n CBA CAJ 28E doub 16 n y CBA CAO 28E sing 17 n y CAJ CAI 28E sing 18 n y CAO CAV 28E doub 19 n y CAI CAU 28E doub 20 n y CAV CAU 28E sing 21 n y CAV OAD 28E sing 22 n n CAU OAC 28E sing 23 n n OAB H1 28E sing 24 n n CAK H2 28E sing 25 n n OAG H3 28E sing 26 n n CAP H4 28E sing 27 n n CAP H5 28E sing 28 n n CAN H6 28E sing 29 n n CBF H7 28E sing 30 n n CBE H8 28E sing 31 n n OAQ H9 28E sing 32 n n CAO H10 28E sing 33 n n OAD H11 28E sing 34 n n OAC H12 28E sing 35 n n CAI H13 28E sing 36 n n CAJ H14 28E sing 37 n n # _atom_sites.entry_id 6AWT _atom_sites.fract_transf_matrix[1][1] 0.018034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 28E A 1 601 601 28E Z01 . F 2 28E A 1 602 603 28E Z01 . G 3 NA A 1 603 1 NA NA . H 2 28E B 1 201 602 28E Z01 . I 3 NA B 1 202 2 NA NA . J 2 28E C 1 201 605 28E Z01 . K 2 28E C 1 202 606 28E Z01 . L 3 NA C 1 203 3 NA NA . M 2 28E D 1 201 604 28E Z01 . N 4 BEZ D 1 202 1 BEZ BEZ . O 5 HOH A 1 701 4 HOH HOH . O 5 HOH A 2 702 20 HOH HOH . O 5 HOH A 3 703 83 HOH HOH . O 5 HOH A 4 704 89 HOH HOH . O 5 HOH A 5 705 91 HOH HOH . O 5 HOH A 6 706 39 HOH HOH . O 5 HOH A 7 707 2 HOH HOH . O 5 HOH A 8 708 3 HOH HOH . O 5 HOH A 9 709 101 HOH HOH . O 5 HOH A 10 710 31 HOH HOH . O 5 HOH A 11 711 60 HOH HOH . O 5 HOH A 12 712 36 HOH HOH . O 5 HOH A 13 713 58 HOH HOH . O 5 HOH A 14 714 38 HOH HOH . O 5 HOH A 15 715 63 HOH HOH . O 5 HOH A 16 716 30 HOH HOH . O 5 HOH A 17 717 6 HOH HOH . O 5 HOH A 18 718 32 HOH HOH . O 5 HOH A 19 719 34 HOH HOH . O 5 HOH A 20 720 86 HOH HOH . O 5 HOH A 21 721 46 HOH HOH . O 5 HOH A 22 722 59 HOH HOH . O 5 HOH A 23 723 45 HOH HOH . O 5 HOH A 24 724 62 HOH HOH . O 5 HOH A 25 725 5 HOH HOH . O 5 HOH A 26 726 37 HOH HOH . O 5 HOH A 27 727 33 HOH HOH . O 5 HOH A 28 728 92 HOH HOH . O 5 HOH A 29 729 85 HOH HOH . O 5 HOH A 30 730 117 HOH HOH . O 5 HOH A 31 731 84 HOH HOH . O 5 HOH A 32 732 116 HOH HOH . P 5 HOH B 1 301 49 HOH HOH . P 5 HOH B 2 302 8 HOH HOH . P 5 HOH B 3 303 9 HOH HOH . P 5 HOH B 4 304 90 HOH HOH . P 5 HOH B 5 305 42 HOH HOH . P 5 HOH B 6 306 40 HOH HOH . P 5 HOH B 7 307 93 HOH HOH . P 5 HOH B 8 308 48 HOH HOH . P 5 HOH B 9 309 12 HOH HOH . P 5 HOH B 10 310 94 HOH HOH . P 5 HOH B 11 311 68 HOH HOH . P 5 HOH B 12 312 98 HOH HOH . P 5 HOH B 13 313 97 HOH HOH . P 5 HOH B 14 314 15 HOH HOH . P 5 HOH B 15 315 11 HOH HOH . P 5 HOH B 16 316 66 HOH HOH . P 5 HOH B 17 317 121 HOH HOH . P 5 HOH B 18 318 47 HOH HOH . P 5 HOH B 19 319 41 HOH HOH . P 5 HOH B 20 320 95 HOH HOH . P 5 HOH B 21 321 96 HOH HOH . P 5 HOH B 22 322 43 HOH HOH . P 5 HOH B 23 323 118 HOH HOH . P 5 HOH B 24 324 10 HOH HOH . P 5 HOH B 25 325 14 HOH HOH . P 5 HOH B 26 326 67 HOH HOH . P 5 HOH B 27 327 64 HOH HOH . P 5 HOH B 28 328 44 HOH HOH . P 5 HOH B 29 329 65 HOH HOH . P 5 HOH B 30 330 13 HOH HOH . P 5 HOH B 31 331 99 HOH HOH . Q 5 HOH C 1 301 100 HOH HOH . Q 5 HOH C 2 302 57 HOH HOH . Q 5 HOH C 3 303 19 HOH HOH . Q 5 HOH C 4 304 54 HOH HOH . Q 5 HOH C 5 305 87 HOH HOH . Q 5 HOH C 6 306 24 HOH HOH . Q 5 HOH C 7 307 74 HOH HOH . Q 5 HOH C 8 308 52 HOH HOH . Q 5 HOH C 9 309 114 HOH HOH . Q 5 HOH C 10 310 53 HOH HOH . Q 5 HOH C 11 311 61 HOH HOH . Q 5 HOH C 12 312 17 HOH HOH . Q 5 HOH C 13 313 102 HOH HOH . Q 5 HOH C 14 314 16 HOH HOH . Q 5 HOH C 15 315 51 HOH HOH . Q 5 HOH C 16 316 21 HOH HOH . Q 5 HOH C 17 317 35 HOH HOH . Q 5 HOH C 18 318 18 HOH HOH . Q 5 HOH C 19 319 109 HOH HOH . Q 5 HOH C 20 320 112 HOH HOH . Q 5 HOH C 21 321 22 HOH HOH . Q 5 HOH C 22 322 105 HOH HOH . Q 5 HOH C 23 323 107 HOH HOH . Q 5 HOH C 24 324 108 HOH HOH . Q 5 HOH C 25 325 75 HOH HOH . Q 5 HOH C 26 326 113 HOH HOH . Q 5 HOH C 27 327 50 HOH HOH . Q 5 HOH C 28 328 55 HOH HOH . Q 5 HOH C 29 329 119 HOH HOH . Q 5 HOH C 30 330 103 HOH HOH . Q 5 HOH C 31 331 73 HOH HOH . Q 5 HOH C 32 332 104 HOH HOH . Q 5 HOH C 33 333 26 HOH HOH . Q 5 HOH C 34 334 23 HOH HOH . Q 5 HOH C 35 335 76 HOH HOH . Q 5 HOH C 36 336 70 HOH HOH . Q 5 HOH C 37 337 71 HOH HOH . Q 5 HOH C 38 338 120 HOH HOH . Q 5 HOH C 39 339 69 HOH HOH . Q 5 HOH C 40 340 72 HOH HOH . R 5 HOH D 1 301 78 HOH HOH . R 5 HOH D 2 302 25 HOH HOH . R 5 HOH D 3 303 106 HOH HOH . R 5 HOH D 4 304 56 HOH HOH . R 5 HOH D 5 305 82 HOH HOH . R 5 HOH D 6 306 7 HOH HOH . R 5 HOH D 7 307 79 HOH HOH . R 5 HOH D 8 308 81 HOH HOH . R 5 HOH D 9 309 29 HOH HOH . R 5 HOH D 10 310 27 HOH HOH . R 5 HOH D 11 311 122 HOH HOH . R 5 HOH D 12 312 80 HOH HOH . R 5 HOH D 13 313 115 HOH HOH . R 5 HOH D 14 314 28 HOH HOH . R 5 HOH D 15 315 77 HOH HOH . R 5 HOH D 16 316 110 HOH HOH . R 5 HOH D 17 317 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB 28E . . . K 2 57.611 39.632 13.755 0.5 63.37 ? OAB 28E 202 C 1 HETATM 2 C CAT 28E . . . K 2 58.496 40.37 13.043 0.5 57.59 ? CAT 28E 202 C 1 HETATM 3 C CAK 28E . . . K 2 59.794 39.917 12.908 0.5 57.85 ? CAK 28E 202 C 1 HETATM 4 C CAY 28E . . . K 2 60.699 40.673 12.173 0.5 58.25 ? CAY 28E 202 C 1 HETATM 5 O OAG 28E . . . K 2 61.967 40.234 11.988 0.5 63.18 ? OAG 28E 202 C 1 HETATM 6 C CBD 28E . . . K 2 60.319 41.86 11.597 0.5 58.07 ? CBD 28E 202 C 1 HETATM 7 C CAP 28E . . . K 2 61.321 42.634 10.781 0.5 53.05 ? CAP 28E 202 C 1 HETATM 8 C CAN 28E . . . K 2 58.113 41.566 12.468 0.5 54.21 ? CAN 28E 202 C 1 HETATM 9 C CBC 28E . . . K 2 59.028 42.304 11.743 0.5 55.06 ? CBC 28E 202 C 1 HETATM 10 O OAR 28E . . . K 2 58.673 43.48 11.177 0.5 55.19 ? OAR 28E 202 C 1 HETATM 11 C CBF 28E . . . K 2 59.619 44.538 10.995 0.5 54.75 ? CBF 28E 202 C 1 HETATM 12 C CBE 28E . . . K 2 61.097 44.138 10.88 0.5 53.06 ? CBE 28E 202 C 1 HETATM 13 O OAQ 28E . . . K 2 61.801 44.863 9.836 0.5 48.55 ? OAQ 28E 202 C 1 HETATM 14 C CBA 28E . . . K 2 59.087 45.174 9.804 0.5 59.89 ? CBA 28E 202 C 1 HETATM 15 C CAO 28E . . . K 2 59.611 46.34 9.309 0.5 61.82 ? CAO 28E 202 C 1 HETATM 16 C CAV 28E . . . K 2 59.03 46.896 8.191 0.5 66.7 ? CAV 28E 202 C 1 HETATM 17 O OAD 28E . . . K 2 59.591 48.03 7.712 0.5 71.91 ? OAD 28E 202 C 1 HETATM 18 C CAU 28E . . . K 2 57.938 46.276 7.578 0.5 66.63 ? CAU 28E 202 C 1 HETATM 19 O OAC 28E . . . K 2 57.337 46.79 6.473 0.5 65.92 ? OAC 28E 202 C 1 HETATM 20 C CAI 28E . . . K 2 57.426 45.096 8.103 0.5 64.06 ? CAI 28E 202 C 1 HETATM 21 C CAJ 28E . . . K 2 57.995 44.555 9.232 0.5 62.97 ? CAJ 28E 202 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #