data_6AWT
#
_model_server_result.job_id            iqfG3v1ueKLvEQ5OoUhYdw 
_model_server_result.datetime_utc      '2024-12-19 11:55:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6awt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    6AWT 
#
_exptl.entry_id    6AWT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              290.268 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3R)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6AWT 
_cell.length_a            55.451 
_cell.length_b            62.507 
_cell.length_c            186.585 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AWT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,O 1 1 
B,H,I,P 2 1 
C,J,K,L,Q 3 1 
D,M,N,R 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 30 A PRO 31 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc2 A O ILE 33 A ILE 34 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc3 A O ASP 34 A ASP 35 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? 
metalc ? metalc4 A O VAL 36 A VAL 37 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc5 G NA NA . A NA 603 1_555 O O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc6 G NA NA . A NA 603 1_555 O O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc7 B O PRO 30 B PRO 31 1_555 I NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc8 B O ILE 33 B ILE 34 1_555 I NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc9 B O ASP 34 B ASP 35 1_555 I NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? 
metalc ? metalc10 B O VAL 36 B VAL 37 1_555 I NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc11 I NA NA . B NA 202 1_555 P O HOH . B HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc12 I NA NA . B NA 202 1_555 P O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc13 C O PRO 30 C PRO 31 1_555 L NA NA . C NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc14 C O ILE 33 C ILE 34 1_555 L NA NA . C NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc15 C O VAL 36 C VAL 37 1_555 L NA NA . C NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc16 L NA NA . C NA 203 1_555 Q O HOH . C HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc17 L NA NA . C NA 203 1_555 Q O HOH . C HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
#
_chem_comp.formula           'C15 H14 O6' 
_chem_comp.formula_weight    290.268 
_chem_comp.id                28E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3R)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Epicatechin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAG CAY 28E sing 1 n n 
CAY CAK 28E doub 2 n y 
CAY CBD 28E sing 3 n y 
CAK CAT 28E sing 4 n y 
CAP CBD 28E sing 5 n n 
CAP CBE 28E sing 6 n n 
CBD CBC 28E doub 7 n y 
CAT OAB 28E sing 8 n n 
CAT CAN 28E doub 9 n y 
OAQ CBE 28E sing 10 n n 
CBE CBF 28E sing 11 n n 
CBC CAN 28E sing 12 n y 
CBC OAR 28E sing 13 n n 
CBF OAR 28E sing 14 n n 
CBF CBA 28E sing 15 n n 
CBA CAJ 28E doub 16 n y 
CBA CAO 28E sing 17 n y 
CAJ CAI 28E sing 18 n y 
CAO CAV 28E doub 19 n y 
CAI CAU 28E doub 20 n y 
CAV CAU 28E sing 21 n y 
CAV OAD 28E sing 22 n n 
CAU OAC 28E sing 23 n n 
OAB H1 28E sing 24 n n 
CAK H2 28E sing 25 n n 
OAG H3 28E sing 26 n n 
CAP H4 28E sing 27 n n 
CAP H5 28E sing 28 n n 
CAN H6 28E sing 29 n n 
CBF H7 28E sing 30 n n 
CBE H8 28E sing 31 n n 
OAQ H9 28E sing 32 n n 
CAO H10 28E sing 33 n n 
OAD H11 28E sing 34 n n 
OAC H12 28E sing 35 n n 
CAI H13 28E sing 36 n n 
CAJ H14 28E sing 37 n n 
#
_atom_sites.entry_id                     6AWT 
_atom_sites.fract_transf_matrix[1][1]    0.018034 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015998 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 28E A 1 601 601 28E Z01 . 
F 2 28E A 1 602 603 28E Z01 . 
G 3 NA A 1 603 1 NA NA . 
H 2 28E B 1 201 602 28E Z01 . 
I 3 NA B 1 202 2 NA NA . 
J 2 28E C 1 201 605 28E Z01 . 
K 2 28E C 1 202 606 28E Z01 . 
L 3 NA C 1 203 3 NA NA . 
M 2 28E D 1 201 604 28E Z01 . 
N 4 BEZ D 1 202 1 BEZ BEZ . 
O 5 HOH A 1 701 4 HOH HOH . 
O 5 HOH A 2 702 20 HOH HOH . 
O 5 HOH A 3 703 83 HOH HOH . 
O 5 HOH A 4 704 89 HOH HOH . 
O 5 HOH A 5 705 91 HOH HOH . 
O 5 HOH A 6 706 39 HOH HOH . 
O 5 HOH A 7 707 2 HOH HOH . 
O 5 HOH A 8 708 3 HOH HOH . 
O 5 HOH A 9 709 101 HOH HOH . 
O 5 HOH A 10 710 31 HOH HOH . 
O 5 HOH A 11 711 60 HOH HOH . 
O 5 HOH A 12 712 36 HOH HOH . 
O 5 HOH A 13 713 58 HOH HOH . 
O 5 HOH A 14 714 38 HOH HOH . 
O 5 HOH A 15 715 63 HOH HOH . 
O 5 HOH A 16 716 30 HOH HOH . 
O 5 HOH A 17 717 6 HOH HOH . 
O 5 HOH A 18 718 32 HOH HOH . 
O 5 HOH A 19 719 34 HOH HOH . 
O 5 HOH A 20 720 86 HOH HOH . 
O 5 HOH A 21 721 46 HOH HOH . 
O 5 HOH A 22 722 59 HOH HOH . 
O 5 HOH A 23 723 45 HOH HOH . 
O 5 HOH A 24 724 62 HOH HOH . 
O 5 HOH A 25 725 5 HOH HOH . 
O 5 HOH A 26 726 37 HOH HOH . 
O 5 HOH A 27 727 33 HOH HOH . 
O 5 HOH A 28 728 92 HOH HOH . 
O 5 HOH A 29 729 85 HOH HOH . 
O 5 HOH A 30 730 117 HOH HOH . 
O 5 HOH A 31 731 84 HOH HOH . 
O 5 HOH A 32 732 116 HOH HOH . 
P 5 HOH B 1 301 49 HOH HOH . 
P 5 HOH B 2 302 8 HOH HOH . 
P 5 HOH B 3 303 9 HOH HOH . 
P 5 HOH B 4 304 90 HOH HOH . 
P 5 HOH B 5 305 42 HOH HOH . 
P 5 HOH B 6 306 40 HOH HOH . 
P 5 HOH B 7 307 93 HOH HOH . 
P 5 HOH B 8 308 48 HOH HOH . 
P 5 HOH B 9 309 12 HOH HOH . 
P 5 HOH B 10 310 94 HOH HOH . 
P 5 HOH B 11 311 68 HOH HOH . 
P 5 HOH B 12 312 98 HOH HOH . 
P 5 HOH B 13 313 97 HOH HOH . 
P 5 HOH B 14 314 15 HOH HOH . 
P 5 HOH B 15 315 11 HOH HOH . 
P 5 HOH B 16 316 66 HOH HOH . 
P 5 HOH B 17 317 121 HOH HOH . 
P 5 HOH B 18 318 47 HOH HOH . 
P 5 HOH B 19 319 41 HOH HOH . 
P 5 HOH B 20 320 95 HOH HOH . 
P 5 HOH B 21 321 96 HOH HOH . 
P 5 HOH B 22 322 43 HOH HOH . 
P 5 HOH B 23 323 118 HOH HOH . 
P 5 HOH B 24 324 10 HOH HOH . 
P 5 HOH B 25 325 14 HOH HOH . 
P 5 HOH B 26 326 67 HOH HOH . 
P 5 HOH B 27 327 64 HOH HOH . 
P 5 HOH B 28 328 44 HOH HOH . 
P 5 HOH B 29 329 65 HOH HOH . 
P 5 HOH B 30 330 13 HOH HOH . 
P 5 HOH B 31 331 99 HOH HOH . 
Q 5 HOH C 1 301 100 HOH HOH . 
Q 5 HOH C 2 302 57 HOH HOH . 
Q 5 HOH C 3 303 19 HOH HOH . 
Q 5 HOH C 4 304 54 HOH HOH . 
Q 5 HOH C 5 305 87 HOH HOH . 
Q 5 HOH C 6 306 24 HOH HOH . 
Q 5 HOH C 7 307 74 HOH HOH . 
Q 5 HOH C 8 308 52 HOH HOH . 
Q 5 HOH C 9 309 114 HOH HOH . 
Q 5 HOH C 10 310 53 HOH HOH . 
Q 5 HOH C 11 311 61 HOH HOH . 
Q 5 HOH C 12 312 17 HOH HOH . 
Q 5 HOH C 13 313 102 HOH HOH . 
Q 5 HOH C 14 314 16 HOH HOH . 
Q 5 HOH C 15 315 51 HOH HOH . 
Q 5 HOH C 16 316 21 HOH HOH . 
Q 5 HOH C 17 317 35 HOH HOH . 
Q 5 HOH C 18 318 18 HOH HOH . 
Q 5 HOH C 19 319 109 HOH HOH . 
Q 5 HOH C 20 320 112 HOH HOH . 
Q 5 HOH C 21 321 22 HOH HOH . 
Q 5 HOH C 22 322 105 HOH HOH . 
Q 5 HOH C 23 323 107 HOH HOH . 
Q 5 HOH C 24 324 108 HOH HOH . 
Q 5 HOH C 25 325 75 HOH HOH . 
Q 5 HOH C 26 326 113 HOH HOH . 
Q 5 HOH C 27 327 50 HOH HOH . 
Q 5 HOH C 28 328 55 HOH HOH . 
Q 5 HOH C 29 329 119 HOH HOH . 
Q 5 HOH C 30 330 103 HOH HOH . 
Q 5 HOH C 31 331 73 HOH HOH . 
Q 5 HOH C 32 332 104 HOH HOH . 
Q 5 HOH C 33 333 26 HOH HOH . 
Q 5 HOH C 34 334 23 HOH HOH . 
Q 5 HOH C 35 335 76 HOH HOH . 
Q 5 HOH C 36 336 70 HOH HOH . 
Q 5 HOH C 37 337 71 HOH HOH . 
Q 5 HOH C 38 338 120 HOH HOH . 
Q 5 HOH C 39 339 69 HOH HOH . 
Q 5 HOH C 40 340 72 HOH HOH . 
R 5 HOH D 1 301 78 HOH HOH . 
R 5 HOH D 2 302 25 HOH HOH . 
R 5 HOH D 3 303 106 HOH HOH . 
R 5 HOH D 4 304 56 HOH HOH . 
R 5 HOH D 5 305 82 HOH HOH . 
R 5 HOH D 6 306 7 HOH HOH . 
R 5 HOH D 7 307 79 HOH HOH . 
R 5 HOH D 8 308 81 HOH HOH . 
R 5 HOH D 9 309 29 HOH HOH . 
R 5 HOH D 10 310 27 HOH HOH . 
R 5 HOH D 11 311 122 HOH HOH . 
R 5 HOH D 12 312 80 HOH HOH . 
R 5 HOH D 13 313 115 HOH HOH . 
R 5 HOH D 14 314 28 HOH HOH . 
R 5 HOH D 15 315 77 HOH HOH . 
R 5 HOH D 16 316 110 HOH HOH . 
R 5 HOH D 17 317 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAB 28E . . . E 2 27.616 20.375 12.919 1 85.47 ? OAB 28E 601 A 1 
HETATM 2 C CAT 28E . . . E 2 26.877 19.35 12.394 1 74.99 ? CAT 28E 601 A 1 
HETATM 3 C CAK 28E . . . E 2 25.742 19.668 11.659 1 73.93 ? CAK 28E 601 A 1 
HETATM 4 C CAY 28E . . . E 2 24.994 18.639 11.12 1 72.19 ? CAY 28E 601 A 1 
HETATM 5 O OAG 28E . . . E 2 23.895 18.981 10.405 1 75.79 ? OAG 28E 601 A 1 
HETATM 6 C CBD 28E . . . E 2 25.366 17.309 11.306 1 67.24 ? CBD 28E 601 A 1 
HETATM 7 C CAP 28E . . . E 2 24.548 16.203 10.696 1 72.19 ? CAP 28E 601 A 1 
HETATM 8 C CAN 28E . . . E 2 27.254 18.011 12.574 1 74.01 ? CAN 28E 601 A 1 
HETATM 9 C CBC 28E . . . E 2 26.493 16.969 12.035 1 70.34 ? CBC 28E 601 A 1 
HETATM 10 O OAR 28E . . . E 2 26.832 15.629 12.229 1 69.32 ? OAR 28E 601 A 1 
HETATM 11 C CBF 28E . . . E 2 25.75 14.682 12.248 1 61.75 ? CBF 28E 601 A 1 
HETATM 12 C CBE 28E . . . E 2 25.238 14.833 10.82 1 71.17 ? CBE 28E 601 A 1 
HETATM 13 O OAQ 28E . . . E 2 26.312 14.651 9.865 1 66.52 ? OAQ 28E 601 A 1 
HETATM 14 C CBA 28E . . . E 2 26.066 13.25 12.452 1 53.33 ? CBA 28E 601 A 1 
HETATM 15 C CAO 28E . . . E 2 25.234 12.399 13.203 1 49.53 ? CAO 28E 601 A 1 
HETATM 16 C CAV 28E . . . E 2 25.568 11.027 13.32 1 48.51 ? CAV 28E 601 A 1 
HETATM 17 O OAD 28E . . . E 2 24.838 10.093 14.045 1 54.71 ? OAD 28E 601 A 1 
HETATM 18 C CAU 28E . . . E 2 26.695 10.536 12.697 1 49.05 ? CAU 28E 601 A 1 
HETATM 19 O OAC 28E . . . E 2 27.031 9.2 12.819 1 59.24 ? OAC 28E 601 A 1 
HETATM 20 C CAI 28E . . . E 2 27.502 11.379 11.95 1 52.12 ? CAI 28E 601 A 1 
HETATM 21 C CAJ 28E . . . E 2 27.181 12.726 11.814 1 53.84 ? CAJ 28E 601 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#