data_6AWV
#
_model_server_result.job_id            Jjyu5-ecRAv83i5VMymIBQ 
_model_server_result.datetime_utc      '2024-12-19 11:59:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6awv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":202}' 
#
_entry.id    6AWV 
#
_exptl.entry_id    6AWV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              290.268 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3R)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.87 
_cell.angle_gamma         90 
_cell.entry_id            6AWV 
_cell.length_a            177.519 
_cell.length_b            52.232 
_cell.length_c            56.449 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AWV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,K 1 1 
B,F,G,L 2 1 
C,H,I,J,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O PRO 30 B PRO 31 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc2 B O ILE 33 B ILE 34 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc3 B O ASP 34 B ASP 35 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc4 B O VAL 36 B VAL 37 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc5 F NA NA . B NA 201 1_555 L O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? 
metalc ? metalc6 C O PRO 30 C PRO 31 1_555 H NA NA . C NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc7 C O ILE 33 C ILE 34 1_555 H NA NA . C NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc8 C O ASP 34 C ASP 35 1_555 H NA NA . C NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? 
metalc ? metalc9 C O VAL 36 C VAL 37 1_555 H NA NA . C NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc10 H NA NA . C NA 201 1_555 M O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
#
_chem_comp.formula           'C15 H14 O6' 
_chem_comp.formula_weight    290.268 
_chem_comp.id                28E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3R)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Epicatechin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAG CAY 28E sing 1 n n 
CAY CAK 28E doub 2 n y 
CAY CBD 28E sing 3 n y 
CAK CAT 28E sing 4 n y 
CAP CBD 28E sing 5 n n 
CAP CBE 28E sing 6 n n 
CBD CBC 28E doub 7 n y 
CAT OAB 28E sing 8 n n 
CAT CAN 28E doub 9 n y 
OAQ CBE 28E sing 10 n n 
CBE CBF 28E sing 11 n n 
CBC CAN 28E sing 12 n y 
CBC OAR 28E sing 13 n n 
CBF OAR 28E sing 14 n n 
CBF CBA 28E sing 15 n n 
CBA CAJ 28E doub 16 n y 
CBA CAO 28E sing 17 n y 
CAJ CAI 28E sing 18 n y 
CAO CAV 28E doub 19 n y 
CAI CAU 28E doub 20 n y 
CAV CAU 28E sing 21 n y 
CAV OAD 28E sing 22 n n 
CAU OAC 28E sing 23 n n 
OAB H1 28E sing 24 n n 
CAK H2 28E sing 25 n n 
OAG H3 28E sing 26 n n 
CAP H4 28E sing 27 n n 
CAP H5 28E sing 28 n n 
CAN H6 28E sing 29 n n 
CBF H7 28E sing 30 n n 
CBE H8 28E sing 31 n n 
OAQ H9 28E sing 32 n n 
CAO H10 28E sing 33 n n 
OAD H11 28E sing 34 n n 
OAC H12 28E sing 35 n n 
CAI H13 28E sing 36 n n 
CAJ H14 28E sing 37 n n 
#
_atom_sites.entry_id                     6AWV 
_atom_sites.fract_transf_matrix[1][1]    0.005633 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000678 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 28E A 1 201 602 28E Z01 . 
E 3 BEZ A 1 202 1 BEZ BEZ . 
F 4 NA B 1 201 2 NA NA . 
G 2 28E B 1 202 601 28E Z01 . 
H 4 NA C 1 201 1 NA NA . 
I 2 28E C 1 202 603 28E Z01 . 
J 2 28E C 1 203 604 28E Z01 . 
K 5 HOH A 1 301 12 HOH HOH . 
K 5 HOH A 2 302 13 HOH HOH . 
K 5 HOH A 3 303 15 HOH HOH . 
K 5 HOH A 4 304 14 HOH HOH . 
K 5 HOH A 5 305 1 HOH HOH . 
K 5 HOH A 6 306 24 HOH HOH . 
K 5 HOH A 7 307 21 HOH HOH . 
K 5 HOH A 8 308 23 HOH HOH . 
K 5 HOH A 9 309 19 HOH HOH . 
K 5 HOH A 10 310 20 HOH HOH . 
L 5 HOH B 1 301 27 HOH HOH . 
L 5 HOH B 2 302 4 HOH HOH . 
L 5 HOH B 3 303 26 HOH HOH . 
L 5 HOH B 4 304 16 HOH HOH . 
L 5 HOH B 5 305 7 HOH HOH . 
L 5 HOH B 6 306 6 HOH HOH . 
L 5 HOH B 7 307 22 HOH HOH . 
L 5 HOH B 8 308 17 HOH HOH . 
L 5 HOH B 9 309 2 HOH HOH . 
L 5 HOH B 10 310 11 HOH HOH . 
L 5 HOH B 11 311 5 HOH HOH . 
L 5 HOH B 12 312 28 HOH HOH . 
L 5 HOH B 13 313 3 HOH HOH . 
M 5 HOH C 1 301 8 HOH HOH . 
M 5 HOH C 2 302 18 HOH HOH . 
M 5 HOH C 3 303 9 HOH HOH . 
M 5 HOH C 4 304 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAB 28E . . . I 2 -36.039 -5.126 19.197 0.75 88.8 ? OAB 28E 202 C 1 
HETATM 2 C CAT 28E . . . I 2 -37.153 -5.897 19.251 0.75 84.03 ? CAT 28E 202 C 1 
HETATM 3 C CAK 28E . . . I 2 -37.186 -7.029 20.053 0.75 80.65 ? CAK 28E 202 C 1 
HETATM 4 C CAY 28E . . . I 2 -38.338 -7.8 20.092 0.75 78.5 ? CAY 28E 202 C 1 
HETATM 5 O OAG 28E . . . I 2 -38.361 -8.89 20.89 0.75 81.76 ? OAG 28E 202 C 1 
HETATM 6 C CBD 28E . . . I 2 -39.445 -7.451 19.338 0.75 75.4 ? CBD 28E 202 C 1 
HETATM 7 C CAP 28E . . . I 2 -40.717 -8.273 19.364 0.75 74.1 ? CAP 28E 202 C 1 
HETATM 8 C CAN 28E . . . I 2 -38.262 -5.548 18.491 0.75 83.86 ? CAN 28E 202 C 1 
HETATM 9 C CBC 28E . . . I 2 -39.411 -6.327 18.537 0.75 78.99 ? CBC 28E 202 C 1 
HETATM 10 O OAR 28E . . . I 2 -40.523 -6.01 17.777 0.75 75.3 ? OAR 28E 202 C 1 
HETATM 11 C CBF 28E . . . I 2 -41.294 -7.093 17.282 0.75 70.93 ? CBF 28E 202 C 1 
HETATM 12 C CBE 28E . . . I 2 -41.855 -7.643 18.558 0.75 72.14 ? CBE 28E 202 C 1 
HETATM 13 O OAQ 28E . . . I 2 -42.395 -6.505 19.225 0.75 68.24 ? OAQ 28E 202 C 1 
HETATM 14 C CBA 28E . . . I 2 -42.371 -6.699 16.398 0.75 69.65 ? CBA 28E 202 C 1 
HETATM 15 C CAO 28E . . . I 2 -42.518 -7.418 15.227 0.75 67.94 ? CAO 28E 202 C 1 
HETATM 16 C CAV 28E . . . I 2 -43.536 -7.087 14.358 0.75 68.92 ? CAV 28E 202 C 1 
HETATM 17 O OAD 28E . . . I 2 -43.679 -7.778 13.201 0.75 69.49 ? OAD 28E 202 C 1 
HETATM 18 C CAU 28E . . . I 2 -44.411 -6.058 14.667 0.75 70.55 ? CAU 28E 202 C 1 
HETATM 19 O OAC 28E . . . I 2 -45.408 -5.757 13.787 0.75 71.04 ? OAC 28E 202 C 1 
HETATM 20 C CAI 28E . . . I 2 -44.266 -5.349 15.866 0.75 70.27 ? CAI 28E 202 C 1 
HETATM 21 C CAJ 28E . . . I 2 -43.243 -5.672 16.744 0.75 69.96 ? CAJ 28E 202 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#