data_6AX0
#
_model_server_result.job_id            ulHepNBu62TpHXC59kgXKA 
_model_server_result.datetime_utc      '2024-12-19 12:09:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ax0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    6AX0 
#
_exptl.entry_id    6AX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              290.268 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3R)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.79 
_cell.angle_gamma         90 
_cell.entry_id            6AX0 
_cell.length_a            39.435 
_cell.length_b            92.068 
_cell.length_c            39.489 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 31 A PRO 31 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc2 A O ILE 34 A ILE 34 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc3 A O VAL 37 A VAL 37 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc4 C NA NA . A NA 201 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc5 B O PRO 31 B PRO 31 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc6 B O ILE 34 B ILE 34 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc7 B O ASP 35 B ASP 35 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? 
metalc ? metalc8 B O VAL 37 B VAL 37 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc9 E NA NA . B NA 201 1_555 H O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
#
_chem_comp.formula           'C15 H14 O6' 
_chem_comp.formula_weight    290.268 
_chem_comp.id                28E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3R)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Epicatechin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAG CAY 28E sing 1 n n 
CAY CAK 28E doub 2 n y 
CAY CBD 28E sing 3 n y 
CAK CAT 28E sing 4 n y 
CAP CBD 28E sing 5 n n 
CAP CBE 28E sing 6 n n 
CBD CBC 28E doub 7 n y 
CAT OAB 28E sing 8 n n 
CAT CAN 28E doub 9 n y 
OAQ CBE 28E sing 10 n n 
CBE CBF 28E sing 11 n n 
CBC CAN 28E sing 12 n y 
CBC OAR 28E sing 13 n n 
CBF OAR 28E sing 14 n n 
CBF CBA 28E sing 15 n n 
CBA CAJ 28E doub 16 n y 
CBA CAO 28E sing 17 n y 
CAJ CAI 28E sing 18 n y 
CAO CAV 28E doub 19 n y 
CAI CAU 28E doub 20 n y 
CAV CAU 28E sing 21 n y 
CAV OAD 28E sing 22 n n 
CAU OAC 28E sing 23 n n 
OAB H1 28E sing 24 n n 
CAK H2 28E sing 25 n n 
OAG H3 28E sing 26 n n 
CAP H4 28E sing 27 n n 
CAP H5 28E sing 28 n n 
CAN H6 28E sing 29 n n 
CBF H7 28E sing 30 n n 
CBE H8 28E sing 31 n n 
OAQ H9 28E sing 32 n n 
CAO H10 28E sing 33 n n 
OAD H11 28E sing 34 n n 
OAC H12 28E sing 35 n n 
CAI H13 28E sing 36 n n 
CAJ H14 28E sing 37 n n 
#
_atom_sites.entry_id                     6AX0 
_atom_sites.fract_transf_matrix[1][1]    0.025358 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000792 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010862 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025336 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 201 1 NA NA . 
D 3 28E A 1 202 601 28E Z01 . 
E 2 NA B 1 201 2 NA NA . 
F 3 28E B 1 202 602 28E Z01 . 
G 4 HOH A 1 301 20 HOH HOH . 
G 4 HOH A 2 302 19 HOH HOH . 
G 4 HOH A 3 303 1 HOH HOH . 
G 4 HOH A 4 304 17 HOH HOH . 
G 4 HOH A 5 305 5 HOH HOH . 
G 4 HOH A 6 306 15 HOH HOH . 
G 4 HOH A 7 307 21 HOH HOH . 
G 4 HOH A 8 308 6 HOH HOH . 
G 4 HOH A 9 309 3 HOH HOH . 
G 4 HOH A 10 310 2 HOH HOH . 
G 4 HOH A 11 311 4 HOH HOH . 
G 4 HOH A 12 312 16 HOH HOH . 
G 4 HOH A 13 313 22 HOH HOH . 
H 4 HOH B 1 301 7 HOH HOH . 
H 4 HOH B 2 302 24 HOH HOH . 
H 4 HOH B 3 303 8 HOH HOH . 
H 4 HOH B 4 304 11 HOH HOH . 
H 4 HOH B 5 305 12 HOH HOH . 
H 4 HOH B 6 306 13 HOH HOH . 
H 4 HOH B 7 307 9 HOH HOH . 
H 4 HOH B 8 308 10 HOH HOH . 
H 4 HOH B 9 309 14 HOH HOH . 
H 4 HOH B 10 310 23 HOH HOH . 
H 4 HOH B 11 311 25 HOH HOH . 
H 4 HOH B 12 312 18 HOH HOH . 
H 4 HOH B 13 313 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAB 28E . . . F 3 9.176 23.73 9.654 0.75 68.44 ? OAB 28E 202 B 1 
HETATM 2 C CAT 28E . . . F 3 8.749 24.519 8.625 0.75 65.65 ? CAT 28E 202 B 1 
HETATM 3 C CAK 28E . . . F 3 7.533 25.211 8.701 0.75 64.06 ? CAK 28E 202 B 1 
HETATM 4 C CAY 28E . . . F 3 7.108 26.01 7.633 0.75 60.64 ? CAY 28E 202 B 1 
HETATM 5 O OAG 28E . . . F 3 5.924 26.679 7.727 0.75 58.91 ? OAG 28E 202 B 1 
HETATM 6 C CBD 28E . . . F 3 7.898 26.11 6.491 0.75 61.3 ? CBD 28E 202 B 1 
HETATM 7 C CAP 28E . . . F 3 7.467 26.967 5.32 0.75 61.1 ? CAP 28E 202 B 1 
HETATM 8 C CAN 28E . . . F 3 9.524 24.621 7.477 0.75 66.42 ? CAN 28E 202 B 1 
HETATM 9 C CBC 28E . . . F 3 9.103 25.412 6.425 0.75 62.94 ? CBC 28E 202 B 1 
HETATM 10 O OAR 28E . . . F 3 9.901 25.476 5.319 0.75 61.33 ? OAR 28E 202 B 1 
HETATM 11 C CBF 28E . . . F 3 9.276 25.768 4.081 0.75 59.03 ? CBF 28E 202 B 1 
HETATM 12 C CBE 28E . . . F 3 8.593 27.119 4.301 0.75 61.03 ? CBE 28E 202 B 1 
HETATM 13 O OAQ 28E . . . F 3 9.509 28.101 4.786 0.75 61.97 ? OAQ 28E 202 B 1 
HETATM 14 C CBA 28E . . . F 3 10.238 25.679 2.945 0.75 55.55 ? CBA 28E 202 B 1 
HETATM 15 C CAO 28E . . . F 3 9.806 25.106 1.747 0.75 54.09 ? CAO 28E 202 B 1 
HETATM 16 C CAV 28E . . . F 3 10.673 24.993 0.661 0.75 54.18 ? CAV 28E 202 B 1 
HETATM 17 O OAD 28E . . . F 3 10.239 24.449 -0.501 0.75 52.51 ? OAD 28E 202 B 1 
HETATM 18 C CAU 28E . . . F 3 11.984 25.435 0.754 0.75 54.37 ? CAU 28E 202 B 1 
HETATM 19 O OAC 28E . . . F 3 12.821 25.312 -0.316 0.75 53.74 ? OAC 28E 202 B 1 
HETATM 20 C CAI 28E . . . F 3 12.432 25.995 1.949 0.75 53.46 ? CAI 28E 202 B 1 
HETATM 21 C CAJ 28E . . . F 3 11.567 26.113 3.041 0.75 54.64 ? CAJ 28E 202 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#