data_6AX8
#
_model_server_result.job_id            90aLslGZbit9k3YmbWqm4A 
_model_server_result.datetime_utc      '2024-12-12 12:03:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ax8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    6AX8 
#
_exptl.entry_id    6AX8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              478.417 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] (2S)-2-azanyl-4-methylsulfanyl-butanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6AX8 
_cell.length_a            196.958 
_cell.length_b            196.958 
_cell.length_c            39.177 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H23 N6 O8 P S' 
_chem_comp.formula_weight    478.417 
_chem_comp.id                ME8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] (2S)-2-azanyl-4-methylsulfanyl-butanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     L-methionine-AMP;methionyl-adenylate 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 ME8 sing 218 n y 
O1 P1 ME8 sing 219 n n 
O1 C9 ME8 sing 220 n n 
P1 O5' ME8 sing 221 n n 
C2 H2 ME8 sing 222 n n 
N2 CA ME8 sing 223 n n 
N2 HN2 ME8 sing 224 n n 
N2 HN2A ME8 sing 225 n n 
N3 C2 ME8 doub 226 n y 
C4 N3 ME8 sing 227 n y 
C5 C4 ME8 doub 228 n y 
C5 C6 ME8 sing 229 n y 
C6 N1 ME8 doub 230 n y 
N6 C6 ME8 sing 231 n n 
N6 HN6 ME8 sing 232 n n 
N6 HN6A ME8 sing 233 n n 
N7 C5 ME8 sing 234 n y 
C8 N7 ME8 doub 235 n y 
C8 N9 ME8 sing 236 n y 
C9 O ME8 doub 237 n n 
N9 C4 ME8 sing 238 n y 
N9 C1' ME8 sing 239 n n 
CA C9 ME8 sing 240 n n 
CA CB ME8 sing 241 n n 
CA HA ME8 sing 242 n n 
CB HB ME8 sing 243 n n 
CB HBA ME8 sing 244 n n 
CE SD ME8 sing 245 n n 
CE HE ME8 sing 246 n n 
CE HEA ME8 sing 247 n n 
CE HEB ME8 sing 248 n n 
CG CB ME8 sing 249 n n 
CG SD ME8 sing 250 n n 
CG HG ME8 sing 251 n n 
CG HGA ME8 sing 252 n n 
C1' C2' ME8 sing 253 n n 
C1' H1' ME8 sing 254 n n 
O1S P1 ME8 doub 255 n n 
C2' O2' ME8 sing 256 n n 
C2' H2' ME8 sing 257 n n 
O2' HO2' ME8 sing 258 n n 
O2S P1 ME8 sing 259 n n 
O2S HO2S ME8 sing 260 n n 
C3' C2' ME8 sing 261 n n 
C3' O3' ME8 sing 262 n n 
C3' H3' ME8 sing 263 n n 
O3' HO3' ME8 sing 264 n n 
C4' C3' ME8 sing 265 n n 
C4' O4' ME8 sing 266 n n 
C4' H4' ME8 sing 267 n n 
O4' C1' ME8 sing 268 n n 
C5' C4' ME8 sing 269 n n 
C5' H5' ME8 sing 270 n n 
C5' "H5'A" ME8 sing 271 n n 
O5' C5' ME8 sing 272 n n 
C8 H8 ME8 sing 273 n n 
#
_atom_sites.entry_id                     6AX8 
_atom_sites.fract_transf_matrix[1][1]    0.005077 
_atom_sites.fract_transf_matrix[1][2]    0.002931 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005863 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ME8 A 1 801 801 ME8 ME8 . 
C 3 HOH A 1 901 18 HOH HOH . 
C 3 HOH A 2 902 16 HOH HOH . 
C 3 HOH A 3 903 37 HOH HOH . 
C 3 HOH A 4 904 2 HOH HOH . 
C 3 HOH A 5 905 4 HOH HOH . 
C 3 HOH A 6 906 3 HOH HOH . 
C 3 HOH A 7 907 25 HOH HOH . 
C 3 HOH A 8 908 35 HOH HOH . 
C 3 HOH A 9 909 11 HOH HOH . 
C 3 HOH A 10 910 20 HOH HOH . 
C 3 HOH A 11 911 17 HOH HOH . 
C 3 HOH A 12 912 19 HOH HOH . 
C 3 HOH A 13 913 14 HOH HOH . 
C 3 HOH A 14 914 28 HOH HOH . 
C 3 HOH A 15 915 8 HOH HOH . 
C 3 HOH A 16 916 27 HOH HOH . 
C 3 HOH A 17 917 22 HOH HOH . 
C 3 HOH A 18 918 5 HOH HOH . 
C 3 HOH A 19 919 32 HOH HOH . 
C 3 HOH A 20 920 7 HOH HOH . 
C 3 HOH A 21 921 6 HOH HOH . 
C 3 HOH A 22 922 12 HOH HOH . 
C 3 HOH A 23 923 26 HOH HOH . 
C 3 HOH A 24 924 1 HOH HOH . 
C 3 HOH A 25 925 33 HOH HOH . 
C 3 HOH A 26 926 34 HOH HOH . 
C 3 HOH A 27 927 36 HOH HOH . 
C 3 HOH A 28 928 9 HOH HOH . 
C 3 HOH A 29 929 15 HOH HOH . 
C 3 HOH A 30 930 10 HOH HOH . 
C 3 HOH A 31 931 24 HOH HOH . 
C 3 HOH A 32 932 31 HOH HOH . 
C 3 HOH A 33 933 38 HOH HOH . 
C 3 HOH A 34 934 13 HOH HOH . 
C 3 HOH A 35 935 23 HOH HOH . 
C 3 HOH A 36 936 29 HOH HOH . 
C 3 HOH A 37 937 21 HOH HOH . 
C 3 HOH A 38 938 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O ME8 . . . B 2 269.721 203.524 -1.182 1 71.3 ? O ME8 801 A 1 
HETATM 2 N N1 ME8 . . . B 2 276.276 209.573 4.652 1 93.14 ? N1 ME8 801 A 1 
HETATM 3 O O1 ME8 . . . B 2 269.45 204.985 -2.923 1 97.56 ? O1 ME8 801 A 1 
HETATM 4 P P1 ME8 . . . B 2 270.444 206.182 -2.557 1 118.58 ? P1 ME8 801 A 1 
HETATM 5 C C2 ME8 . . . B 2 276.788 208.376 4.368 1 95.23 ? C2 ME8 801 A 1 
HETATM 6 N N2 ME8 . . . B 2 269.061 203.016 -4.537 1 72.39 ? N2 ME8 801 A 1 
HETATM 7 N N3 ME8 . . . B 2 276.287 207.543 3.459 1 98.35 ? N3 ME8 801 A 1 
HETATM 8 C C4 ME8 . . . B 2 275.21 207.881 2.742 1 104 ? C4 ME8 801 A 1 
HETATM 9 C C5 ME8 . . . B 2 274.599 209.174 2.985 1 102.37 ? C5 ME8 801 A 1 
HETATM 10 C C6 ME8 . . . B 2 275.207 210.036 4.014 1 94.72 ? C6 ME8 801 A 1 
HETATM 11 N N6 ME8 . . . B 2 274.722 211.249 4.315 1 92.41 ? N6 ME8 801 A 1 
HETATM 12 N N7 ME8 . . . B 2 273.564 209.246 2.146 1 106.08 ? N7 ME8 801 A 1 
HETATM 13 C C8 ME8 . . . B 2 273.514 208.108 1.431 1 103.5 ? C8 ME8 801 A 1 
HETATM 14 C C9 ME8 . . . B 2 269.477 203.669 -2.345 1 77.6 ? C9 ME8 801 A 1 
HETATM 15 N N9 ME8 . . . B 2 274.498 207.294 1.798 1 107.04 ? N9 ME8 801 A 1 
HETATM 16 C CA ME8 . . . B 2 269.161 202.506 -3.207 1 71.93 ? CA ME8 801 A 1 
HETATM 17 C CB ME8 . . . B 2 270.268 201.471 -3.172 1 64.99 ? CB ME8 801 A 1 
HETATM 18 S SD ME8 . . . B 2 271.356 199.233 -4.062 1 53.83 ? SD ME8 801 A 1 
HETATM 19 C CE ME8 . . . B 2 270.74 197.851 -4.901 1 54.84 ? CE ME8 801 A 1 
HETATM 20 C CG ME8 . . . B 2 270.156 200.467 -4.297 1 58.41 ? CG ME8 801 A 1 
HETATM 21 C C1' ME8 . . . B 2 274.748 205.968 1.231 1 109.76 ? C1' ME8 801 A 1 
HETATM 22 O O1S ME8 . . . B 2 270.571 206.988 -3.804 1 109.11 ? O1S ME8 801 A 1 
HETATM 23 C C2' ME8 . . . B 2 273.626 205.017 1.58 1 112.04 ? C2' ME8 801 A 1 
HETATM 24 O O2' ME8 . . . B 2 274.003 204.025 2.52 1 111.53 ? O2' ME8 801 A 1 
HETATM 25 O O2S ME8 . . . B 2 270.006 206.918 -1.321 1 116.05 ? O2S ME8 801 A 1 
HETATM 26 C C3' ME8 . . . B 2 273.362 204.276 0.312 1 111.47 ? C3' ME8 801 A 1 
HETATM 27 O O3' ME8 . . . B 2 274.242 203.171 0.306 1 100.96 ? O3' ME8 801 A 1 
HETATM 28 C C4' ME8 . . . B 2 273.765 205.236 -0.765 1 112.5 ? C4' ME8 801 A 1 
HETATM 29 O O4' ME8 . . . B 2 274.692 206.126 -0.171 1 110.08 ? O4' ME8 801 A 1 
HETATM 30 C C5' ME8 . . . B 2 272.556 206.042 -1.155 1 116.8 ? C5' ME8 801 A 1 
HETATM 31 O O5' ME8 . . . B 2 271.828 205.465 -2.225 1 116.33 ? O5' ME8 801 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#