data_6AXN # _model_server_result.job_id RDaf9MZznzkbnTKzl0Daug _model_server_result.datetime_utc '2024-11-28 20:38:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6axn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6AXN # _exptl.entry_id 6AXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.16 _cell.angle_gamma 90 _cell.entry_id 6AXN _cell.length_a 51.614 _cell.length_b 46.787 _cell.length_c 75.371 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 120 A ASP 99 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A OD1 ASP 120 A ASP 99 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc3 A OD1 ASN 261 A ASN 240 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 A OG SER 265 A SER 244 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc5 A OE2 GLU 269 A GLU 248 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc6 B MG MG . A MG 401 1_555 E O2 POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc7 B MG MG . A MG 401 1_555 E O6 POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc8 B MG MG . A MG 401 1_555 H O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc9 B MG MG . A MG 401 1_555 H O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc10 B MG MG . A MG 401 1_555 H O HOH . A HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc11 C MG MG . A MG 402 1_555 E O2 POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc12 C MG MG . A MG 402 1_555 H O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc13 C MG MG . A MG 402 1_555 H O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc14 C MG MG . A MG 402 1_555 H O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc15 C MG MG . A MG 402 1_555 H O HOH . A HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc16 D MG MG . A MG 403 1_555 E O1 POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc17 D MG MG . A MG 403 1_555 E O4 POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc18 D MG MG . A MG 403 1_555 H O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 296 n n P1 O2 POP sing 297 n n P1 O3 POP sing 298 n n P1 O POP sing 299 n n O2 HO2 POP sing 300 n n O P2 POP sing 301 n n P2 O4 POP doub 302 n n P2 O5 POP sing 303 n n P2 O6 POP sing 304 n n O5 HO5 POP sing 305 n n # _atom_sites.entry_id 6AXN _atom_sites.fract_transf_matrix[1][1] 0.019375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002777 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 2 MG A 1 402 2 MG MG . D 2 MG A 1 403 3 MG MG . E 3 POP A 1 404 1 POP POP . F 4 BTM A 1 405 1 BTM BTM . G 5 SO4 A 1 406 1 SO4 SO4 . H 6 HOH A 1 501 178 HOH HOH . H 6 HOH A 2 502 74 HOH HOH . H 6 HOH A 3 503 195 HOH HOH . H 6 HOH A 4 504 25 HOH HOH . H 6 HOH A 5 505 138 HOH HOH . H 6 HOH A 6 506 119 HOH HOH . H 6 HOH A 7 507 69 HOH HOH . H 6 HOH A 8 508 143 HOH HOH . H 6 HOH A 9 509 62 HOH HOH . H 6 HOH A 10 510 186 HOH HOH . H 6 HOH A 11 511 184 HOH HOH . H 6 HOH A 12 512 145 HOH HOH . H 6 HOH A 13 513 133 HOH HOH . H 6 HOH A 14 514 41 HOH HOH . H 6 HOH A 15 515 37 HOH HOH . H 6 HOH A 16 516 131 HOH HOH . H 6 HOH A 17 517 48 HOH HOH . H 6 HOH A 18 518 177 HOH HOH . H 6 HOH A 19 519 111 HOH HOH . H 6 HOH A 20 520 171 HOH HOH . H 6 HOH A 21 521 38 HOH HOH . H 6 HOH A 22 522 84 HOH HOH . H 6 HOH A 23 523 5 HOH HOH . H 6 HOH A 24 524 42 HOH HOH . H 6 HOH A 25 525 190 HOH HOH . H 6 HOH A 26 526 15 HOH HOH . H 6 HOH A 27 527 60 HOH HOH . H 6 HOH A 28 528 183 HOH HOH . H 6 HOH A 29 529 140 HOH HOH . H 6 HOH A 30 530 136 HOH HOH . H 6 HOH A 31 531 198 HOH HOH . H 6 HOH A 32 532 70 HOH HOH . H 6 HOH A 33 533 35 HOH HOH . H 6 HOH A 34 534 50 HOH HOH . H 6 HOH A 35 535 180 HOH HOH . H 6 HOH A 36 536 79 HOH HOH . H 6 HOH A 37 537 53 HOH HOH . H 6 HOH A 38 538 130 HOH HOH . H 6 HOH A 39 539 23 HOH HOH . H 6 HOH A 40 540 56 HOH HOH . H 6 HOH A 41 541 4 HOH HOH . H 6 HOH A 42 542 21 HOH HOH . H 6 HOH A 43 543 116 HOH HOH . H 6 HOH A 44 544 13 HOH HOH . H 6 HOH A 45 545 106 HOH HOH . H 6 HOH A 46 546 24 HOH HOH . H 6 HOH A 47 547 33 HOH HOH . H 6 HOH A 48 548 144 HOH HOH . H 6 HOH A 49 549 125 HOH HOH . H 6 HOH A 50 550 11 HOH HOH . H 6 HOH A 51 551 181 HOH HOH . H 6 HOH A 52 552 8 HOH HOH . H 6 HOH A 53 553 27 HOH HOH . H 6 HOH A 54 554 49 HOH HOH . H 6 HOH A 55 555 20 HOH HOH . H 6 HOH A 56 556 75 HOH HOH . H 6 HOH A 57 557 14 HOH HOH . H 6 HOH A 58 558 9 HOH HOH . H 6 HOH A 59 559 40 HOH HOH . H 6 HOH A 60 560 114 HOH HOH . H 6 HOH A 61 561 91 HOH HOH . H 6 HOH A 62 562 10 HOH HOH . H 6 HOH A 63 563 7 HOH HOH . H 6 HOH A 64 564 104 HOH HOH . H 6 HOH A 65 565 39 HOH HOH . H 6 HOH A 66 566 99 HOH HOH . H 6 HOH A 67 567 150 HOH HOH . H 6 HOH A 68 568 80 HOH HOH . H 6 HOH A 69 569 1 HOH HOH . H 6 HOH A 70 570 55 HOH HOH . H 6 HOH A 71 571 19 HOH HOH . H 6 HOH A 72 572 182 HOH HOH . H 6 HOH A 73 573 31 HOH HOH . H 6 HOH A 74 574 95 HOH HOH . H 6 HOH A 75 575 192 HOH HOH . H 6 HOH A 76 576 78 HOH HOH . H 6 HOH A 77 577 196 HOH HOH . H 6 HOH A 78 578 179 HOH HOH . H 6 HOH A 79 579 107 HOH HOH . H 6 HOH A 80 580 58 HOH HOH . H 6 HOH A 81 581 28 HOH HOH . H 6 HOH A 82 582 188 HOH HOH . H 6 HOH A 83 583 71 HOH HOH . H 6 HOH A 84 584 87 HOH HOH . H 6 HOH A 85 585 54 HOH HOH . H 6 HOH A 86 586 6 HOH HOH . H 6 HOH A 87 587 30 HOH HOH . H 6 HOH A 88 588 189 HOH HOH . H 6 HOH A 89 589 22 HOH HOH . H 6 HOH A 90 590 168 HOH HOH . H 6 HOH A 91 591 187 HOH HOH . H 6 HOH A 92 592 103 HOH HOH . H 6 HOH A 93 593 110 HOH HOH . H 6 HOH A 94 594 46 HOH HOH . H 6 HOH A 95 595 68 HOH HOH . H 6 HOH A 96 596 94 HOH HOH . H 6 HOH A 97 597 85 HOH HOH . H 6 HOH A 98 598 165 HOH HOH . H 6 HOH A 99 599 164 HOH HOH . H 6 HOH A 100 600 2 HOH HOH . H 6 HOH A 101 601 61 HOH HOH . H 6 HOH A 102 602 3 HOH HOH . H 6 HOH A 103 603 156 HOH HOH . H 6 HOH A 104 604 132 HOH HOH . H 6 HOH A 105 605 124 HOH HOH . H 6 HOH A 106 606 12 HOH HOH . H 6 HOH A 107 607 191 HOH HOH . H 6 HOH A 108 608 197 HOH HOH . H 6 HOH A 109 609 134 HOH HOH . H 6 HOH A 110 610 34 HOH HOH . H 6 HOH A 111 611 32 HOH HOH . H 6 HOH A 112 612 18 HOH HOH . H 6 HOH A 113 613 81 HOH HOH . H 6 HOH A 114 614 16 HOH HOH . H 6 HOH A 115 615 72 HOH HOH . H 6 HOH A 116 616 86 HOH HOH . H 6 HOH A 117 617 26 HOH HOH . H 6 HOH A 118 618 113 HOH HOH . H 6 HOH A 119 619 139 HOH HOH . H 6 HOH A 120 620 36 HOH HOH . H 6 HOH A 121 621 105 HOH HOH . H 6 HOH A 122 622 29 HOH HOH . H 6 HOH A 123 623 90 HOH HOH . H 6 HOH A 124 624 44 HOH HOH . H 6 HOH A 125 625 88 HOH HOH . H 6 HOH A 126 626 115 HOH HOH . H 6 HOH A 127 627 112 HOH HOH . H 6 HOH A 128 628 83 HOH HOH . H 6 HOH A 129 629 173 HOH HOH . H 6 HOH A 130 630 175 HOH HOH . H 6 HOH A 131 631 121 HOH HOH . H 6 HOH A 132 632 117 HOH HOH . H 6 HOH A 133 633 108 HOH HOH . H 6 HOH A 134 634 51 HOH HOH . H 6 HOH A 135 635 122 HOH HOH . H 6 HOH A 136 636 185 HOH HOH . H 6 HOH A 137 637 82 HOH HOH . H 6 HOH A 138 638 67 HOH HOH . H 6 HOH A 139 639 100 HOH HOH . H 6 HOH A 140 640 64 HOH HOH . H 6 HOH A 141 641 123 HOH HOH . H 6 HOH A 142 642 77 HOH HOH . H 6 HOH A 143 643 65 HOH HOH . H 6 HOH A 144 644 43 HOH HOH . H 6 HOH A 145 645 141 HOH HOH . H 6 HOH A 146 646 93 HOH HOH . H 6 HOH A 147 647 97 HOH HOH . H 6 HOH A 148 648 73 HOH HOH . H 6 HOH A 149 649 59 HOH HOH . H 6 HOH A 150 650 166 HOH HOH . H 6 HOH A 151 651 174 HOH HOH . H 6 HOH A 152 652 118 HOH HOH . H 6 HOH A 153 653 193 HOH HOH . H 6 HOH A 154 654 161 HOH HOH . H 6 HOH A 155 655 153 HOH HOH . H 6 HOH A 156 656 17 HOH HOH . H 6 HOH A 157 657 152 HOH HOH . H 6 HOH A 158 658 142 HOH HOH . H 6 HOH A 159 659 52 HOH HOH . H 6 HOH A 160 660 76 HOH HOH . H 6 HOH A 161 661 128 HOH HOH . H 6 HOH A 162 662 194 HOH HOH . H 6 HOH A 163 663 155 HOH HOH . H 6 HOH A 164 664 163 HOH HOH . H 6 HOH A 165 665 63 HOH HOH . H 6 HOH A 166 666 151 HOH HOH . H 6 HOH A 167 667 199 HOH HOH . H 6 HOH A 168 668 66 HOH HOH . H 6 HOH A 169 669 137 HOH HOH . H 6 HOH A 170 670 92 HOH HOH . H 6 HOH A 171 671 149 HOH HOH . H 6 HOH A 172 672 170 HOH HOH . H 6 HOH A 173 673 109 HOH HOH . H 6 HOH A 174 674 102 HOH HOH . H 6 HOH A 175 675 126 HOH HOH . H 6 HOH A 176 676 147 HOH HOH . H 6 HOH A 177 677 45 HOH HOH . H 6 HOH A 178 678 127 HOH HOH . H 6 HOH A 179 679 47 HOH HOH . H 6 HOH A 180 680 148 HOH HOH . H 6 HOH A 181 681 57 HOH HOH . H 6 HOH A 182 682 96 HOH HOH . H 6 HOH A 183 683 135 HOH HOH . H 6 HOH A 184 684 120 HOH HOH . H 6 HOH A 185 685 89 HOH HOH . H 6 HOH A 186 686 146 HOH HOH . H 6 HOH A 187 687 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . E 3 59.951 -3.501 20.668 1 19 ? P1 POP 404 A 1 HETATM 2 O O1 POP . . . E 3 60.789 -4.501 19.912 1 19.64 1 O1 POP 404 A 1 HETATM 3 O O2 POP . . . E 3 60.226 -3.362 22.132 1 19.39 1 O2 POP 404 A 1 HETATM 4 O O3 POP . . . E 3 58.48 -3.628 20.399 1 18.04 ? O3 POP 404 A 1 HETATM 5 O O POP . . . E 3 60.365 -2.043 20.072 1 20.32 ? O POP 404 A 1 HETATM 6 P P2 POP . . . E 3 61.874 -1.53 19.976 1 19.51 ? P2 POP 404 A 1 HETATM 7 O O4 POP . . . E 3 62.641 -2.353 18.99 1 17.36 1 O4 POP 404 A 1 HETATM 8 O O5 POP . . . E 3 61.842 -0.106 19.463 1 19.18 1 O5 POP 404 A 1 HETATM 9 O O6 POP . . . E 3 62.428 -1.501 21.354 1 18.98 ? O6 POP 404 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #