data_6AXW # _model_server_result.job_id LN43BbRhU6LyTWWERCAgZQ _model_server_result.datetime_utc '2024-10-19 19:16:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6axw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 6AXW # _exptl.entry_id 6AXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AXW _cell.length_a 92.611 _cell.length_b 92.611 _cell.length_c 57.954 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 198 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 198 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 218 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 218 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.042 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6AXW _atom_sites.fract_transf_matrix[1][1] 0.010798 _atom_sites.fract_transf_matrix[1][2] 0.006234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 301 301 IOD IOD . C 2 IOD A 1 302 302 IOD IOD . D 2 IOD A 1 303 303 IOD IOD . E 2 IOD A 1 304 304 IOD IOD . F 2 IOD A 1 305 305 IOD IOD . G 2 IOD A 1 306 306 IOD IOD . H 2 IOD A 1 307 307 IOD IOD . I 2 IOD A 1 308 308 IOD IOD . J 2 IOD A 1 309 309 IOD IOD . K 3 CL A 1 310 310 CL CL . L 3 CL A 1 311 311 CL CL . M 3 CL A 1 312 312 CL CL . N 3 CL A 1 313 313 CL CL . O 3 CL A 1 314 314 CL CL . P 3 CL A 1 315 315 CL CL . Q 3 CL A 1 316 316 CL CL . R 3 CL A 1 317 317 CL CL . S 3 CL A 1 318 318 CL CL . T 3 CL A 1 319 319 CL CL . U 4 HOH A 1 401 529 HOH HOH . U 4 HOH A 2 402 533 HOH HOH . U 4 HOH A 3 403 653 HOH HOH . U 4 HOH A 4 404 575 HOH HOH . U 4 HOH A 5 405 516 HOH HOH . U 4 HOH A 6 406 541 HOH HOH . U 4 HOH A 7 407 538 HOH HOH . U 4 HOH A 8 408 530 HOH HOH . U 4 HOH A 9 409 505 HOH HOH . U 4 HOH A 10 410 607 HOH HOH . U 4 HOH A 11 411 528 HOH HOH . U 4 HOH A 12 412 600 HOH HOH . U 4 HOH A 13 413 637 HOH HOH . U 4 HOH A 14 414 532 HOH HOH . U 4 HOH A 15 415 596 HOH HOH . U 4 HOH A 16 416 552 HOH HOH . U 4 HOH A 17 417 585 HOH HOH . U 4 HOH A 18 418 626 HOH HOH . U 4 HOH A 19 419 520 HOH HOH . U 4 HOH A 20 420 611 HOH HOH . U 4 HOH A 21 421 630 HOH HOH . U 4 HOH A 22 422 524 HOH HOH . U 4 HOH A 23 423 655 HOH HOH . U 4 HOH A 24 424 625 HOH HOH . U 4 HOH A 25 425 616 HOH HOH . U 4 HOH A 26 426 578 HOH HOH . U 4 HOH A 27 427 608 HOH HOH . U 4 HOH A 28 428 535 HOH HOH . U 4 HOH A 29 429 556 HOH HOH . U 4 HOH A 30 430 514 HOH HOH . U 4 HOH A 31 431 602 HOH HOH . U 4 HOH A 32 432 582 HOH HOH . U 4 HOH A 33 433 622 HOH HOH . U 4 HOH A 34 434 574 HOH HOH . U 4 HOH A 35 435 568 HOH HOH . U 4 HOH A 36 436 610 HOH HOH . U 4 HOH A 37 437 521 HOH HOH . U 4 HOH A 38 438 649 HOH HOH . U 4 HOH A 39 439 562 HOH HOH . U 4 HOH A 40 440 654 HOH HOH . U 4 HOH A 41 441 536 HOH HOH . U 4 HOH A 42 442 588 HOH HOH . U 4 HOH A 43 443 658 HOH HOH . U 4 HOH A 44 444 522 HOH HOH . U 4 HOH A 45 445 534 HOH HOH . U 4 HOH A 46 446 560 HOH HOH . U 4 HOH A 47 447 548 HOH HOH . U 4 HOH A 48 448 619 HOH HOH . U 4 HOH A 49 449 549 HOH HOH . U 4 HOH A 50 450 646 HOH HOH . U 4 HOH A 51 451 501 HOH HOH . U 4 HOH A 52 452 544 HOH HOH . U 4 HOH A 53 453 513 HOH HOH . U 4 HOH A 54 454 540 HOH HOH . U 4 HOH A 55 455 643 HOH HOH . U 4 HOH A 56 456 511 HOH HOH . U 4 HOH A 57 457 590 HOH HOH . U 4 HOH A 58 458 640 HOH HOH . U 4 HOH A 59 459 559 HOH HOH . U 4 HOH A 60 460 563 HOH HOH . U 4 HOH A 61 461 526 HOH HOH . U 4 HOH A 62 462 531 HOH HOH . U 4 HOH A 63 463 502 HOH HOH . U 4 HOH A 64 464 594 HOH HOH . U 4 HOH A 65 465 525 HOH HOH . U 4 HOH A 66 466 543 HOH HOH . U 4 HOH A 67 467 567 HOH HOH . U 4 HOH A 68 468 555 HOH HOH . U 4 HOH A 69 469 553 HOH HOH . U 4 HOH A 70 470 519 HOH HOH . U 4 HOH A 71 471 518 HOH HOH . U 4 HOH A 72 472 639 HOH HOH . U 4 HOH A 73 473 615 HOH HOH . U 4 HOH A 74 474 636 HOH HOH . U 4 HOH A 75 475 512 HOH HOH . U 4 HOH A 76 476 623 HOH HOH . U 4 HOH A 77 477 579 HOH HOH . U 4 HOH A 78 478 557 HOH HOH . U 4 HOH A 79 479 565 HOH HOH . U 4 HOH A 80 480 517 HOH HOH . U 4 HOH A 81 481 634 HOH HOH . U 4 HOH A 82 482 628 HOH HOH . U 4 HOH A 83 483 609 HOH HOH . U 4 HOH A 84 484 598 HOH HOH . U 4 HOH A 85 485 510 HOH HOH . U 4 HOH A 86 486 507 HOH HOH . U 4 HOH A 87 487 569 HOH HOH . U 4 HOH A 88 488 558 HOH HOH . U 4 HOH A 89 489 545 HOH HOH . U 4 HOH A 90 490 651 HOH HOH . U 4 HOH A 91 491 551 HOH HOH . U 4 HOH A 92 492 645 HOH HOH . U 4 HOH A 93 493 503 HOH HOH . U 4 HOH A 94 494 515 HOH HOH . U 4 HOH A 95 495 624 HOH HOH . U 4 HOH A 96 496 576 HOH HOH . U 4 HOH A 97 497 632 HOH HOH . U 4 HOH A 98 498 508 HOH HOH . U 4 HOH A 99 499 581 HOH HOH . U 4 HOH A 100 500 546 HOH HOH . U 4 HOH A 101 501 595 HOH HOH . U 4 HOH A 102 502 566 HOH HOH . U 4 HOH A 103 503 570 HOH HOH . U 4 HOH A 104 504 603 HOH HOH . U 4 HOH A 105 505 592 HOH HOH . U 4 HOH A 106 506 504 HOH HOH . U 4 HOH A 107 507 506 HOH HOH . U 4 HOH A 108 508 537 HOH HOH . U 4 HOH A 109 509 621 HOH HOH . U 4 HOH A 110 510 657 HOH HOH . U 4 HOH A 111 511 573 HOH HOH . U 4 HOH A 112 512 577 HOH HOH . U 4 HOH A 113 513 550 HOH HOH . U 4 HOH A 114 514 583 HOH HOH . U 4 HOH A 115 515 618 HOH HOH . U 4 HOH A 116 516 605 HOH HOH . U 4 HOH A 117 517 523 HOH HOH . U 4 HOH A 118 518 638 HOH HOH . U 4 HOH A 119 519 644 HOH HOH . U 4 HOH A 120 520 509 HOH HOH . U 4 HOH A 121 521 627 HOH HOH . U 4 HOH A 122 522 642 HOH HOH . U 4 HOH A 123 523 641 HOH HOH . U 4 HOH A 124 524 547 HOH HOH . U 4 HOH A 125 525 601 HOH HOH . U 4 HOH A 126 526 527 HOH HOH . U 4 HOH A 127 527 604 HOH HOH . U 4 HOH A 128 528 584 HOH HOH . U 4 HOH A 129 529 599 HOH HOH . U 4 HOH A 130 530 564 HOH HOH . U 4 HOH A 131 531 629 HOH HOH . U 4 HOH A 132 532 606 HOH HOH . U 4 HOH A 133 533 571 HOH HOH . U 4 HOH A 134 534 542 HOH HOH . U 4 HOH A 135 535 539 HOH HOH . U 4 HOH A 136 536 561 HOH HOH . U 4 HOH A 137 537 586 HOH HOH . U 4 HOH A 138 538 572 HOH HOH . U 4 HOH A 139 539 580 HOH HOH . U 4 HOH A 140 540 647 HOH HOH . U 4 HOH A 141 541 593 HOH HOH . U 4 HOH A 142 542 620 HOH HOH . U 4 HOH A 143 543 617 HOH HOH . U 4 HOH A 144 544 631 HOH HOH . U 4 HOH A 145 545 648 HOH HOH . U 4 HOH A 146 546 635 HOH HOH . U 4 HOH A 147 547 587 HOH HOH . U 4 HOH A 148 548 612 HOH HOH . U 4 HOH A 149 549 554 HOH HOH . U 4 HOH A 150 550 589 HOH HOH . U 4 HOH A 151 551 591 HOH HOH . U 4 HOH A 152 552 652 HOH HOH . U 4 HOH A 153 553 614 HOH HOH . U 4 HOH A 154 554 656 HOH HOH . U 4 HOH A 155 555 633 HOH HOH . U 4 HOH A 156 556 613 HOH HOH . U 4 HOH A 157 557 597 HOH HOH . U 4 HOH A 158 558 650 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.812 _atom_site.Cartn_y -6.949 _atom_site.Cartn_z -1.557 _atom_site.occupancy 0.66 _atom_site.B_iso_or_equiv 82.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 309 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #