data_6AY4 # _model_server_result.job_id fNCKs0ElRoSxC9mHMbbimA _model_server_result.datetime_utc '2024-10-12 23:26:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ay4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6AY4 # _exptl.entry_id 6AY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.52 _cell.angle_gamma 90 _cell.entry_id 6AY4 _cell.length_a 122.11 _cell.length_b 55.31 _cell.length_c 73.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id FE _struct_conn.ptnr1_label_comp_id HEM _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HEM _struct_conn.ptnr1_auth_seq_id 501 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id N5 _struct_conn.ptnr2_label_comp_id TPF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id TPF _struct_conn.ptnr2_auth_seq_id 506 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.738 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 138 n n CHA C4D HEM doub 139 n n CHA HHA HEM sing 140 n n CHB C4A HEM sing 141 n n CHB C1B HEM doub 142 n n CHB HHB HEM sing 143 n n CHC C4B HEM sing 144 n n CHC C1C HEM doub 145 n n CHC HHC HEM sing 146 n n CHD C4C HEM doub 147 n n CHD C1D HEM sing 148 n n CHD HHD HEM sing 149 n n C1A C2A HEM doub 150 n y C1A NA HEM sing 151 n y C2A C3A HEM sing 152 n y C2A CAA HEM sing 153 n n C3A C4A HEM doub 154 n y C3A CMA HEM sing 155 n n C4A NA HEM sing 156 n y CMA HMA HEM sing 157 n n CMA HMAA HEM sing 158 n n CMA HMAB HEM sing 159 n n CAA CBA HEM sing 160 n n CAA HAA HEM sing 161 n n CAA HAAA HEM sing 162 n n CBA CGA HEM sing 163 n n CBA HBA HEM sing 164 n n CBA HBAA HEM sing 165 n n CGA O1A HEM doub 166 n n CGA O2A HEM sing 167 n n C1B C2B HEM sing 168 n n C1B NB HEM sing 169 n n C2B C3B HEM doub 170 n n C2B CMB HEM sing 171 n n C3B C4B HEM sing 172 n n C3B CAB HEM sing 173 n n C4B NB HEM doub 174 n n CMB HMB HEM sing 175 n n CMB HMBA HEM sing 176 n n CMB HMBB HEM sing 177 n n CAB CBB HEM doub 178 n n CAB HAB HEM sing 179 n n CBB HBB HEM sing 180 n n CBB HBBA HEM sing 181 n n C1C C2C HEM sing 182 n y C1C NC HEM sing 183 n y C2C C3C HEM doub 184 n y C2C CMC HEM sing 185 n n C3C C4C HEM sing 186 n y C3C CAC HEM sing 187 n n C4C NC HEM sing 188 n y CMC HMC HEM sing 189 n n CMC HMCA HEM sing 190 n n CMC HMCB HEM sing 191 n n CAC CBC HEM doub 192 n n CAC HAC HEM sing 193 n n CBC HBC HEM sing 194 n n CBC HBCA HEM sing 195 n n C1D C2D HEM sing 196 n n C1D ND HEM doub 197 n n C2D C3D HEM doub 198 n n C2D CMD HEM sing 199 n n C3D C4D HEM sing 200 n n C3D CAD HEM sing 201 n n C4D ND HEM sing 202 n n CMD HMD HEM sing 203 n n CMD HMDA HEM sing 204 n n CMD HMDB HEM sing 205 n n CAD CBD HEM sing 206 n n CAD HAD HEM sing 207 n n CAD HADA HEM sing 208 n n CBD CGD HEM sing 209 n n CBD HBD HEM sing 210 n n CBD HBDA HEM sing 211 n n CGD O1D HEM doub 212 n n CGD O2D HEM sing 213 n n O2A H2A HEM sing 214 n n O2D H2D HEM sing 215 n n FE NA HEM sing 216 n n FE NB HEM sing 217 n n FE NC HEM sing 218 n n FE ND HEM sing 219 n n # _atom_sites.entry_id 6AY4 _atom_sites.fract_transf_matrix[1][1] 0.008189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001669 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEB . C 3 EDO A 1 502 503 EDO EDO . D 3 EDO A 1 503 504 EDO EDO . E 3 EDO A 1 504 505 EDO EDO . F 3 EDO A 1 505 507 EDO EDO . G 4 TPF A 1 506 1 TPF TPF . H 5 HOH A 1 601 5 HOH HOH . H 5 HOH A 2 602 1 HOH HOH . H 5 HOH A 3 603 4 HOH HOH . H 5 HOH A 4 604 2 HOH HOH . H 5 HOH A 5 605 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 16.991 -5.608 24.142 1 86.01 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 15.557 -1.182 22.548 1 102.64 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 20.24 0.213 22.208 1 109.51 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 21.669 -4.376 23.202 1 81.55 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 16.149 -4.457 23.772 1 90.02 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 14.675 -4.54 23.785 1 84.97 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 14.272 -3.217 23.325 1 83.93 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 15.542 -2.546 23.082 1 87.03 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 12.896 -2.673 23.1 1 95.19 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 13.796 -5.663 24.252 1 85.01 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 13.628 -6.763 23.214 1 84.23 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 12.635 -7.741 23.78 1 87.97 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 12.122 -8.592 23.025 1 92.72 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 12.316 -7.623 24.986 1 103.53 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 16.754 -0.372 22.291 1 109.92 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 16.611 1.035 21.858 1 97.01 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 18.026 1.466 21.759 1 113.73 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 18.766 0.25 22.188 1 109.41 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 15.303 1.742 21.591 1 101.64 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 18.689 2.773 21.361 1 119.71 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 17.771 3.76 20.668 1 117.08 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 21.089 -0.965 22.449 1 94.82 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 22.551 -0.851 22.289 1 99.51 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 22.97 -2.224 22.607 1 93.81 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 21.709 -2.944 22.878 1 80.32 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 23.314 0.391 21.925 1 115.4 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 24.321 -2.851 22.6 1 88.92 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 25.415 -2.199 22.249 1 99.06 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 20.473 -5.161 23.53 1 92.91 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 20.611 -6.563 23.951 1 87.71 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 19.235 -6.935 24.312 1 88.28 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 18.455 -5.703 23.999 1 85.36 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 21.871 -7.369 24.061 1 89.38 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 18.815 -8.323 24.718 1 90.28 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 17.737 -8.39 25.793 1 84.96 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 17.353 -9.849 25.822 1 85.54 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 16.332 -10.232 25.206 1 76.39 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 18.159 -10.655 26.331 1 89.64 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 16.628 -3.281 23.345 1 91.89 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 18.011 -0.808 22.507 1 105.39 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 20.618 -2.182 22.777 1 84.56 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 19.22 -4.657 23.615 1 92.68 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 18.621 -2.733 23.071 1 84.79 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #