data_6AY6
#
_model_server_result.job_id            f593F_g9HhwLjoc0f9sOhg 
_model_server_result.datetime_utc      '2024-11-29 21:43:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ay6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6AY6 
#
_exptl.entry_id    6AY6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.8 
_cell.angle_gamma         90 
_cell.entry_id            6AY6 
_cell.length_a            120.18 
_cell.length_b            55.34 
_cell.length_c            73.22 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AY6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 366 A ARG 391 1_555 A N CSO 367 A CSO 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C CSO 367 A CSO 392 1_555 A N THR 368 A THR 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 A SG CYS 405 A CYS 430 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc2 B N8 VOR . A VOR 501 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 143 n n 
CHA C4D HEM doub 144 n n 
CHA HHA HEM sing 145 n n 
CHB C4A HEM sing 146 n n 
CHB C1B HEM doub 147 n n 
CHB HHB HEM sing 148 n n 
CHC C4B HEM sing 149 n n 
CHC C1C HEM doub 150 n n 
CHC HHC HEM sing 151 n n 
CHD C4C HEM doub 152 n n 
CHD C1D HEM sing 153 n n 
CHD HHD HEM sing 154 n n 
C1A C2A HEM doub 155 n y 
C1A NA HEM sing 156 n y 
C2A C3A HEM sing 157 n y 
C2A CAA HEM sing 158 n n 
C3A C4A HEM doub 159 n y 
C3A CMA HEM sing 160 n n 
C4A NA HEM sing 161 n y 
CMA HMA HEM sing 162 n n 
CMA HMAA HEM sing 163 n n 
CMA HMAB HEM sing 164 n n 
CAA CBA HEM sing 165 n n 
CAA HAA HEM sing 166 n n 
CAA HAAA HEM sing 167 n n 
CBA CGA HEM sing 168 n n 
CBA HBA HEM sing 169 n n 
CBA HBAA HEM sing 170 n n 
CGA O1A HEM doub 171 n n 
CGA O2A HEM sing 172 n n 
C1B C2B HEM sing 173 n n 
C1B NB HEM sing 174 n n 
C2B C3B HEM doub 175 n n 
C2B CMB HEM sing 176 n n 
C3B C4B HEM sing 177 n n 
C3B CAB HEM sing 178 n n 
C4B NB HEM doub 179 n n 
CMB HMB HEM sing 180 n n 
CMB HMBA HEM sing 181 n n 
CMB HMBB HEM sing 182 n n 
CAB CBB HEM doub 183 n n 
CAB HAB HEM sing 184 n n 
CBB HBB HEM sing 185 n n 
CBB HBBA HEM sing 186 n n 
C1C C2C HEM sing 187 n y 
C1C NC HEM sing 188 n y 
C2C C3C HEM doub 189 n y 
C2C CMC HEM sing 190 n n 
C3C C4C HEM sing 191 n y 
C3C CAC HEM sing 192 n n 
C4C NC HEM sing 193 n y 
CMC HMC HEM sing 194 n n 
CMC HMCA HEM sing 195 n n 
CMC HMCB HEM sing 196 n n 
CAC CBC HEM doub 197 n n 
CAC HAC HEM sing 198 n n 
CBC HBC HEM sing 199 n n 
CBC HBCA HEM sing 200 n n 
C1D C2D HEM sing 201 n n 
C1D ND HEM doub 202 n n 
C2D C3D HEM doub 203 n n 
C2D CMD HEM sing 204 n n 
C3D C4D HEM sing 205 n n 
C3D CAD HEM sing 206 n n 
C4D ND HEM sing 207 n n 
CMD HMD HEM sing 208 n n 
CMD HMDA HEM sing 209 n n 
CMD HMDB HEM sing 210 n n 
CAD CBD HEM sing 211 n n 
CAD HAD HEM sing 212 n n 
CAD HADA HEM sing 213 n n 
CBD CGD HEM sing 214 n n 
CBD HBD HEM sing 215 n n 
CBD HBDA HEM sing 216 n n 
CGD O1D HEM doub 217 n n 
CGD O2D HEM sing 218 n n 
O2A H2A HEM sing 219 n n 
O2D H2D HEM sing 220 n n 
FE NA HEM sing 221 n n 
FE NB HEM sing 222 n n 
FE NC HEM sing 223 n n 
FE ND HEM sing 224 n n 
#
_atom_sites.entry_id                     6AY6 
_atom_sites.fract_transf_matrix[1][1]    0.008321 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001587 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013904 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 VOR A 1 501 1 VOR VOR . 
C 3 HEM A 1 502 1 HEM HEM . 
D 4 HOH A 1 601 8 HOH HOH . 
D 4 HOH A 2 602 7 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 2 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 9 HOH HOH . 
D 4 HOH A 8 608 4 HOH HOH . 
D 4 HOH A 9 609 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 16.86 -5.766 23.909 1 46.29 ? CHA HEM 502 A 1 
HETATM 2 C CHB HEM . . . C 3 15.493 -1.475 22.381 1 51.91 ? CHB HEM 502 A 1 
HETATM 3 C CHC HEM . . . C 3 20.127 0 22.22 1 53.46 ? CHC HEM 502 A 1 
HETATM 4 C CHD HEM . . . C 3 21.431 -4.532 23.143 1 57.17 ? CHD HEM 502 A 1 
HETATM 5 C C1A HEM . . . C 3 16.131 -4.686 23.598 1 50.66 ? C1A HEM 502 A 1 
HETATM 6 C C2A HEM . . . C 3 14.721 -4.651 23.606 1 60.36 ? C2A HEM 502 A 1 
HETATM 7 C C3A HEM . . . C 3 14.351 -3.431 23.191 1 63.36 ? C3A HEM 502 A 1 
HETATM 8 C C4A HEM . . . C 3 15.501 -2.735 22.86 1 39.52 ? C4A HEM 502 A 1 
HETATM 9 C CMA HEM . . . C 3 12.95 -2.92 23.045 1 59.07 ? CMA HEM 502 A 1 
HETATM 10 C CAA HEM . . . C 3 13.796 -5.725 24.08 1 47.27 ? CAA HEM 502 A 1 
HETATM 11 C CBA HEM . . . C 3 13.713 -6.847 23.045 1 59.68 ? CBA HEM 502 A 1 
HETATM 12 C CGA HEM . . . C 3 12.583 -7.797 23.395 1 64.79 ? CGA HEM 502 A 1 
HETATM 13 O O1A HEM . . . C 3 12.107 -8.55 22.521 1 70.09 ? O1A HEM 502 A 1 
HETATM 14 O O2A HEM . . . C 3 12.096 -7.825 24.549 1 70.38 ? O2A HEM 502 A 1 
HETATM 15 C C1B HEM . . . C 3 16.642 -0.733 22.211 1 57.62 ? C1B HEM 502 A 1 
HETATM 16 C C2B HEM . . . C 3 16.573 0.593 21.85 1 51.11 ? C2B HEM 502 A 1 
HETATM 17 C C3B HEM . . . C 3 17.819 1.084 21.786 1 46.73 ? C3B HEM 502 A 1 
HETATM 18 C C4B HEM . . . C 3 18.721 -0.047 22.155 1 58.21 ? C4B HEM 502 A 1 
HETATM 19 C CMB HEM . . . C 3 15.32 1.375 21.587 1 61.83 ? CMB HEM 502 A 1 
HETATM 20 C CAB HEM . . . C 3 18.086 2.495 21.447 1 54.94 ? CAB HEM 502 A 1 
HETATM 21 C CBB HEM . . . C 3 19.318 2.968 21.315 1 72.29 ? CBB HEM 502 A 1 
HETATM 22 C C1C HEM . . . C 3 20.9 -1.133 22.474 1 55.2 ? C1C HEM 502 A 1 
HETATM 23 C C2C HEM . . . C 3 22.293 -1.179 22.545 1 60.76 ? C2C HEM 502 A 1 
HETATM 24 C C3C HEM . . . C 3 22.632 -2.481 22.882 1 55.7 ? C3C HEM 502 A 1 
HETATM 25 C C4C HEM . . . C 3 21.454 -3.208 22.942 1 46.08 ? C4C HEM 502 A 1 
HETATM 26 C CMC HEM . . . C 3 23.23 -0.022 22.37 1 55.1 ? CMC HEM 502 A 1 
HETATM 27 C CAC HEM . . . C 3 23.954 -3.106 22.96 1 55.33 ? CAC HEM 502 A 1 
HETATM 28 C CBC HEM . . . C 3 25.025 -2.482 22.519 1 72.97 ? CBC HEM 502 A 1 
HETATM 29 C C1D HEM . . . C 3 20.269 -5.2 23.417 1 64.1 ? C1D HEM 502 A 1 
HETATM 30 C C2D HEM . . . C 3 20.296 -6.581 23.844 1 57.01 ? C2D HEM 502 A 1 
HETATM 31 C C3D HEM . . . C 3 19.044 -6.926 24.096 1 51.41 ? C3D HEM 502 A 1 
HETATM 32 C C4D HEM . . . C 3 18.225 -5.749 23.789 1 61.7 ? C4D HEM 502 A 1 
HETATM 33 C CMD HEM . . . C 3 21.511 -7.469 23.932 1 56.57 ? CMD HEM 502 A 1 
HETATM 34 C CAD HEM . . . C 3 18.572 -8.313 24.448 1 65.25 ? CAD HEM 502 A 1 
HETATM 35 C CBD HEM . . . C 3 18.055 -8.379 25.886 1 66.02 ? CBD HEM 502 A 1 
HETATM 36 C CGD HEM . . . C 3 17.731 -9.823 26.249 1 74.62 ? CGD HEM 502 A 1 
HETATM 37 O O1D HEM . . . C 3 17.794 -10.724 25.384 1 69.79 ? O1D HEM 502 A 1 
HETATM 38 O O2D HEM . . . C 3 17.405 -10.127 27.422 1 68 ? O2D HEM 502 A 1 
HETATM 39 N NA HEM . . . C 3 16.575 -3.512 23.079 1 51.21 ? NA HEM 502 A 1 
HETATM 40 N NB HEM . . . C 3 17.91 -1.096 22.372 1 48.86 ? NB HEM 502 A 1 
HETATM 41 N NC HEM . . . C 3 20.436 -2.395 22.682 1 47.04 ? NC HEM 502 A 1 
HETATM 42 N ND HEM . . . C 3 19.018 -4.735 23.415 1 43.83 ? ND HEM 502 A 1 
HETATM 43 FE FE HEM . . . C 3 18.48 -2.989 22.938 1 57.93 ? FE HEM 502 A 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#