data_6AYB # _model_server_result.job_id rFIc2WNL1CT8icpNlLfTJA _model_server_result.datetime_utc '2024-11-29 23:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ayb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6AYB # _exptl.entry_id 6AYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.13 _cell.angle_gamma 90 _cell.entry_id 6AYB _cell.length_a 119.21 _cell.length_b 55.25 _cell.length_c 71.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 345 A GLU 370 1_555 A N CSO 346 A CSO 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C CSO 346 A CSO 371 1_555 A N GLU 347 A GLU 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C ARG 366 A ARG 391 1_555 A N CSO 367 A CSO 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C CSO 367 A CSO 392 1_555 A N THR 368 A THR 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A O LEU 59 A LEU 84 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc2 A SG CYS 405 A CYS 430 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 B FE HEM . A HEM 501 1_555 I N2 KKK . A KKK 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 97 n n C1 C2 EDO sing 98 n n C1 H11 EDO sing 99 n n C1 H12 EDO sing 100 n n O1 HO1 EDO sing 101 n n C2 O2 EDO sing 102 n n C2 H21 EDO sing 103 n n C2 H22 EDO sing 104 n n O2 HO2 EDO sing 105 n n # _atom_sites.entry_id 6AYB _atom_sites.fract_transf_matrix[1][1] 0.008389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001499 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 1 HEM HEM . C 3 EDO A 1 502 1 EDO EDO . D 3 EDO A 1 503 2 EDO EDO . E 3 EDO A 1 504 3 EDO EDO . F 3 EDO A 1 505 4 EDO EDO . G 3 EDO A 1 506 5 EDO EDO . H 4 CA A 1 507 1 CA CA . I 5 KKK A 1 508 1 KKK KKK . J 6 HOH A 1 601 50 HOH HOH . J 6 HOH A 2 602 64 HOH HOH . J 6 HOH A 3 603 23 HOH HOH . J 6 HOH A 4 604 36 HOH HOH . J 6 HOH A 5 605 74 HOH HOH . J 6 HOH A 6 606 59 HOH HOH . J 6 HOH A 7 607 19 HOH HOH . J 6 HOH A 8 608 79 HOH HOH . J 6 HOH A 9 609 32 HOH HOH . J 6 HOH A 10 610 62 HOH HOH . J 6 HOH A 11 611 6 HOH HOH . J 6 HOH A 12 612 47 HOH HOH . J 6 HOH A 13 613 34 HOH HOH . J 6 HOH A 14 614 78 HOH HOH . J 6 HOH A 15 615 81 HOH HOH . J 6 HOH A 16 616 7 HOH HOH . J 6 HOH A 17 617 17 HOH HOH . J 6 HOH A 18 618 67 HOH HOH . J 6 HOH A 19 619 13 HOH HOH . J 6 HOH A 20 620 30 HOH HOH . J 6 HOH A 21 621 38 HOH HOH . J 6 HOH A 22 622 26 HOH HOH . J 6 HOH A 23 623 15 HOH HOH . J 6 HOH A 24 624 57 HOH HOH . J 6 HOH A 25 625 21 HOH HOH . J 6 HOH A 26 626 35 HOH HOH . J 6 HOH A 27 627 68 HOH HOH . J 6 HOH A 28 628 8 HOH HOH . J 6 HOH A 29 629 20 HOH HOH . J 6 HOH A 30 630 63 HOH HOH . J 6 HOH A 31 631 25 HOH HOH . J 6 HOH A 32 632 10 HOH HOH . J 6 HOH A 33 633 3 HOH HOH . J 6 HOH A 34 634 1 HOH HOH . J 6 HOH A 35 635 55 HOH HOH . J 6 HOH A 36 636 29 HOH HOH . J 6 HOH A 37 637 76 HOH HOH . J 6 HOH A 38 638 83 HOH HOH . J 6 HOH A 39 639 56 HOH HOH . J 6 HOH A 40 640 85 HOH HOH . J 6 HOH A 41 641 51 HOH HOH . J 6 HOH A 42 642 31 HOH HOH . J 6 HOH A 43 643 28 HOH HOH . J 6 HOH A 44 644 2 HOH HOH . J 6 HOH A 45 645 27 HOH HOH . J 6 HOH A 46 646 5 HOH HOH . J 6 HOH A 47 647 22 HOH HOH . J 6 HOH A 48 648 33 HOH HOH . J 6 HOH A 49 649 12 HOH HOH . J 6 HOH A 50 650 9 HOH HOH . J 6 HOH A 51 651 75 HOH HOH . J 6 HOH A 52 652 54 HOH HOH . J 6 HOH A 53 653 65 HOH HOH . J 6 HOH A 54 654 53 HOH HOH . J 6 HOH A 55 655 45 HOH HOH . J 6 HOH A 56 656 14 HOH HOH . J 6 HOH A 57 657 77 HOH HOH . J 6 HOH A 58 658 40 HOH HOH . J 6 HOH A 59 659 4 HOH HOH . J 6 HOH A 60 660 24 HOH HOH . J 6 HOH A 61 661 60 HOH HOH . J 6 HOH A 62 662 18 HOH HOH . J 6 HOH A 63 663 16 HOH HOH . J 6 HOH A 64 664 69 HOH HOH . J 6 HOH A 65 665 61 HOH HOH . J 6 HOH A 66 666 43 HOH HOH . J 6 HOH A 67 667 48 HOH HOH . J 6 HOH A 68 668 58 HOH HOH . J 6 HOH A 69 669 82 HOH HOH . J 6 HOH A 70 670 42 HOH HOH . J 6 HOH A 71 671 37 HOH HOH . J 6 HOH A 72 672 46 HOH HOH . J 6 HOH A 73 673 49 HOH HOH . J 6 HOH A 74 674 44 HOH HOH . J 6 HOH A 75 675 84 HOH HOH . J 6 HOH A 76 676 41 HOH HOH . J 6 HOH A 77 677 70 HOH HOH . J 6 HOH A 78 678 80 HOH HOH . J 6 HOH A 79 679 52 HOH HOH . J 6 HOH A 80 680 71 HOH HOH . J 6 HOH A 81 681 39 HOH HOH . J 6 HOH A 82 682 66 HOH HOH . J 6 HOH A 83 683 72 HOH HOH . J 6 HOH A 84 684 11 HOH HOH . J 6 HOH A 85 685 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 5.615 23.834 80.085 1 43.33 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . D 3 4.219 23.716 79.812 1 33.94 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . D 3 6.38 22.875 79.179 1 41.66 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . D 3 5.596 21.667 79.001 1 51.96 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 4 #