data_6AYB # _model_server_result.job_id tWSKuJKo9U7bNnF-snefUA _model_server_result.datetime_utc '2024-10-12 23:26:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ayb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 6AYB # _exptl.entry_id 6AYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.431 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-acetyl-4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-imidazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.13 _cell.angle_gamma 90 _cell.entry_id 6AYB _cell.length_a 119.21 _cell.length_b 55.25 _cell.length_c 71.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 345 A GLU 370 1_555 A N CSO 346 A CSO 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C CSO 346 A CSO 371 1_555 A N GLU 347 A GLU 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C ARG 366 A ARG 391 1_555 A N CSO 367 A CSO 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C CSO 367 A CSO 392 1_555 A N THR 368 A THR 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A O LEU 59 A LEU 84 1_555 H CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc2 A SG CYS 405 A CYS 430 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 B FE HEM . A HEM 501 1_555 I N2 KKK . A KKK 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'C26 H28 Cl2 N4 O4' _chem_comp.formula_weight 531.431 _chem_comp.id KKK _chem_comp.mon_nstd_flag . _chem_comp.name 1-acetyl-4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-imidazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 KKK doub 278 n y C1 N1 KKK sing 279 n y C1 H1 KKK sing 280 n n C3 N1 KKK sing 281 n y N1 C4 KKK sing 282 n n C5 O1 KKK sing 283 n n O1 C6 KKK sing 284 n n CL1 C11 KKK sing 285 n n C2 N2 KKK sing 286 n y C2 C3 KKK doub 287 n y C2 H2 KKK sing 288 n n C5 O2 KKK sing 289 n n O2 C7 KKK sing 290 n n C9 CL2 KKK sing 291 n n C3 H3 KKK sing 292 n n C18 N3 KKK sing 293 n n N3 C21 KKK sing 294 n n N3 C24 KKK sing 295 n n C14 O3 KKK sing 296 n n O3 C15 KKK sing 297 n n C5 C4 KKK sing 298 n n C4 H4 KKK sing 299 n n C4 H4A KKK sing 300 n n C22 N4 KKK sing 301 n n C23 N4 KKK sing 302 n n N4 C25 KKK sing 303 n n C25 O4 KKK doub 304 n n C8 C5 KKK sing 305 n n C7 C6 KKK sing 306 n n C6 C14 KKK sing 307 n n C6 H6 KKK sing 308 n n C7 H7 KKK sing 309 n n C7 H7A KKK sing 310 n n C9 C8 KKK doub 311 n y C13 C8 KKK sing 312 n y C10 C9 KKK sing 313 n y C11 C10 KKK doub 314 n y C10 H10 KKK sing 315 n n C11 C12 KKK sing 316 n y C12 C13 KKK doub 317 n y C12 H12 KKK sing 318 n n C13 H13 KKK sing 319 n n C14 H14 KKK sing 320 n n C14 H14A KKK sing 321 n n C15 C16 KKK doub 322 n y C15 C20 KKK sing 323 n y C16 C17 KKK sing 324 n y C16 H16 KKK sing 325 n n C17 C18 KKK doub 326 n y C17 H17 KKK sing 327 n n C19 C18 KKK sing 328 n y C20 C19 KKK doub 329 n y C19 H19 KKK sing 330 n n C20 H20 KKK sing 331 n n C21 C22 KKK sing 332 n n C21 H21 KKK sing 333 n n C21 H21A KKK sing 334 n n C22 H22 KKK sing 335 n n C22 H22A KKK sing 336 n n C24 C23 KKK sing 337 n n C23 H23 KKK sing 338 n n C23 H23A KKK sing 339 n n C24 H24 KKK sing 340 n n C24 H24A KKK sing 341 n n C25 C26 KKK sing 342 n n C26 H26 KKK sing 343 n n C26 H26A KKK sing 344 n n C26 H26B KKK sing 345 n n # _atom_sites.entry_id 6AYB _atom_sites.fract_transf_matrix[1][1] 0.008389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001499 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 1 HEM HEM . C 3 EDO A 1 502 1 EDO EDO . D 3 EDO A 1 503 2 EDO EDO . E 3 EDO A 1 504 3 EDO EDO . F 3 EDO A 1 505 4 EDO EDO . G 3 EDO A 1 506 5 EDO EDO . H 4 CA A 1 507 1 CA CA . I 5 KKK A 1 508 1 KKK KKK . J 6 HOH A 1 601 50 HOH HOH . J 6 HOH A 2 602 64 HOH HOH . J 6 HOH A 3 603 23 HOH HOH . J 6 HOH A 4 604 36 HOH HOH . J 6 HOH A 5 605 74 HOH HOH . J 6 HOH A 6 606 59 HOH HOH . J 6 HOH A 7 607 19 HOH HOH . J 6 HOH A 8 608 79 HOH HOH . J 6 HOH A 9 609 32 HOH HOH . J 6 HOH A 10 610 62 HOH HOH . J 6 HOH A 11 611 6 HOH HOH . J 6 HOH A 12 612 47 HOH HOH . J 6 HOH A 13 613 34 HOH HOH . J 6 HOH A 14 614 78 HOH HOH . J 6 HOH A 15 615 81 HOH HOH . J 6 HOH A 16 616 7 HOH HOH . J 6 HOH A 17 617 17 HOH HOH . J 6 HOH A 18 618 67 HOH HOH . J 6 HOH A 19 619 13 HOH HOH . J 6 HOH A 20 620 30 HOH HOH . J 6 HOH A 21 621 38 HOH HOH . J 6 HOH A 22 622 26 HOH HOH . J 6 HOH A 23 623 15 HOH HOH . J 6 HOH A 24 624 57 HOH HOH . J 6 HOH A 25 625 21 HOH HOH . J 6 HOH A 26 626 35 HOH HOH . J 6 HOH A 27 627 68 HOH HOH . J 6 HOH A 28 628 8 HOH HOH . J 6 HOH A 29 629 20 HOH HOH . J 6 HOH A 30 630 63 HOH HOH . J 6 HOH A 31 631 25 HOH HOH . J 6 HOH A 32 632 10 HOH HOH . J 6 HOH A 33 633 3 HOH HOH . J 6 HOH A 34 634 1 HOH HOH . J 6 HOH A 35 635 55 HOH HOH . J 6 HOH A 36 636 29 HOH HOH . J 6 HOH A 37 637 76 HOH HOH . J 6 HOH A 38 638 83 HOH HOH . J 6 HOH A 39 639 56 HOH HOH . J 6 HOH A 40 640 85 HOH HOH . J 6 HOH A 41 641 51 HOH HOH . J 6 HOH A 42 642 31 HOH HOH . J 6 HOH A 43 643 28 HOH HOH . J 6 HOH A 44 644 2 HOH HOH . J 6 HOH A 45 645 27 HOH HOH . J 6 HOH A 46 646 5 HOH HOH . J 6 HOH A 47 647 22 HOH HOH . J 6 HOH A 48 648 33 HOH HOH . J 6 HOH A 49 649 12 HOH HOH . J 6 HOH A 50 650 9 HOH HOH . J 6 HOH A 51 651 75 HOH HOH . J 6 HOH A 52 652 54 HOH HOH . J 6 HOH A 53 653 65 HOH HOH . J 6 HOH A 54 654 53 HOH HOH . J 6 HOH A 55 655 45 HOH HOH . J 6 HOH A 56 656 14 HOH HOH . J 6 HOH A 57 657 77 HOH HOH . J 6 HOH A 58 658 40 HOH HOH . J 6 HOH A 59 659 4 HOH HOH . J 6 HOH A 60 660 24 HOH HOH . J 6 HOH A 61 661 60 HOH HOH . J 6 HOH A 62 662 18 HOH HOH . J 6 HOH A 63 663 16 HOH HOH . J 6 HOH A 64 664 69 HOH HOH . J 6 HOH A 65 665 61 HOH HOH . J 6 HOH A 66 666 43 HOH HOH . J 6 HOH A 67 667 48 HOH HOH . J 6 HOH A 68 668 58 HOH HOH . J 6 HOH A 69 669 82 HOH HOH . J 6 HOH A 70 670 42 HOH HOH . J 6 HOH A 71 671 37 HOH HOH . J 6 HOH A 72 672 46 HOH HOH . J 6 HOH A 73 673 49 HOH HOH . J 6 HOH A 74 674 44 HOH HOH . J 6 HOH A 75 675 84 HOH HOH . J 6 HOH A 76 676 41 HOH HOH . J 6 HOH A 77 677 70 HOH HOH . J 6 HOH A 78 678 80 HOH HOH . J 6 HOH A 79 679 52 HOH HOH . J 6 HOH A 80 680 71 HOH HOH . J 6 HOH A 81 681 39 HOH HOH . J 6 HOH A 82 682 66 HOH HOH . J 6 HOH A 83 683 72 HOH HOH . J 6 HOH A 84 684 11 HOH HOH . J 6 HOH A 85 685 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KKK . . . I 5 4.856 21.051 90.628 1 30.38 ? C1 KKK 508 A 1 HETATM 2 N N1 KKK . . . I 5 5.031 20.948 89.31 1 37.68 ? N1 KKK 508 A 1 HETATM 3 O O1 KKK . . . I 5 3.352 18.487 90.118 1 39 ? O1 KKK 508 A 1 HETATM 4 CL CL1 KKK . . . I 5 9.957 16.931 90.984 1 36.8 ? CL1 KKK 508 A 1 HETATM 5 C C2 KKK . . . I 5 6.251 22.593 90.011 1 29.29 ? C2 KKK 508 A 1 HETATM 6 N N2 KKK . . . I 5 5.596 22.054 91.063 1 35.88 ? N2 KKK 508 A 1 HETATM 7 O O2 KKK . . . I 5 4.067 17.684 88.08 1 39.47 ? O2 KKK 508 A 1 HETATM 8 CL CL2 KKK . . . I 5 6.958 18.713 87.086 1 48.2 ? CL2 KKK 508 A 1 HETATM 9 C C3 KKK . . . I 5 5.887 21.885 88.905 1 35.12 ? C3 KKK 508 A 1 HETATM 10 N N3 KKK . . . I 5 -3.021 18.865 83.714 1 61.1 ? N3 KKK 508 A 1 HETATM 11 O O3 KKK . . . I 5 1.186 17.896 87.241 1 56.42 ? O3 KKK 508 A 1 HETATM 12 C C4 KKK . . . I 5 4.412 19.991 88.468 1 34.44 ? C4 KKK 508 A 1 HETATM 13 N N4 KKK . . . I 5 -4.828 19.382 81.716 1 66.14 ? N4 KKK 508 A 1 HETATM 14 O O4 KKK . . . I 5 -5.83 20.76 80.239 1 69.3 ? O4 KKK 508 A 1 HETATM 15 C C5 KKK . . . I 5 4.408 18.616 89.117 1 35.68 ? C5 KKK 508 A 1 HETATM 16 C C6 KKK . . . I 5 2.325 17.676 89.482 1 43.15 ? C6 KKK 508 A 1 HETATM 17 C C7 KKK . . . I 5 3.112 16.811 88.596 1 37.37 ? C7 KKK 508 A 1 HETATM 18 C C8 KKK . . . I 5 5.753 18.203 89.652 1 34.3 ? C8 KKK 508 A 1 HETATM 19 C C9 KKK . . . I 5 6.961 18.214 88.785 1 34.73 ? C9 KKK 508 A 1 HETATM 20 C C10 KKK . . . I 5 8.143 17.83 89.248 1 34.92 ? C10 KKK 508 A 1 HETATM 21 C C11 KKK . . . I 5 8.3 17.411 90.505 1 37.7 ? C11 KKK 508 A 1 HETATM 22 C C12 KKK . . . I 5 7.209 17.381 91.379 1 32.37 ? C12 KKK 508 A 1 HETATM 23 C C13 KKK . . . I 5 5.923 17.769 90.942 1 32.23 ? C13 KKK 508 A 1 HETATM 24 C C14 KKK . . . I 5 1.346 18.509 88.593 1 52.25 ? C14 KKK 508 A 1 HETATM 25 C C15 KKK . . . I 5 0.122 18.157 86.405 1 55.46 ? C15 KKK 508 A 1 HETATM 26 C C16 KKK . . . I 5 0.178 17.65 85.132 1 60.16 ? C16 KKK 508 A 1 HETATM 27 C C17 KKK . . . I 5 -0.841 17.871 84.238 1 62.19 ? C17 KKK 508 A 1 HETATM 28 C C18 KKK . . . I 5 -1.954 18.622 84.612 1 63.49 ? C18 KKK 508 A 1 HETATM 29 C C19 KKK . . . I 5 -2.025 19.142 85.911 1 67.4 ? C19 KKK 508 A 1 HETATM 30 C C20 KKK . . . I 5 -0.988 18.911 86.812 1 65.71 ? C20 KKK 508 A 1 HETATM 31 C C21 KKK . . . I 5 -2.831 20.073 82.925 1 61.2 ? C21 KKK 508 A 1 HETATM 32 C C22 KKK . . . I 5 -4.205 20.512 82.446 1 57.97 ? C22 KKK 508 A 1 HETATM 33 C C23 KKK . . . I 5 -4.735 17.977 82.297 1 60.65 ? C23 KKK 508 A 1 HETATM 34 C C24 KKK . . . I 5 -3.324 17.748 82.806 1 57.04 ? C24 KKK 508 A 1 HETATM 35 C C25 KKK . . . I 5 -5.487 19.629 80.568 1 70.7 ? C25 KKK 508 A 1 HETATM 36 C C26 KKK . . . I 5 -5.793 18.445 79.705 1 69.32 ? C26 KKK 508 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 36 #