data_6AYC
#
_model_server_result.job_id            bpZz27xTgAot-_RO_qXY8g 
_model_server_result.datetime_utc      '2024-10-12 23:24:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ayc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    6AYC 
#
_exptl.entry_id    6AYC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.62 
_cell.angle_gamma         90 
_cell.entry_id            6AYC 
_cell.length_a            120.3 
_cell.length_b            55.19 
_cell.length_c            72.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AYC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 405 A CYS 430 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc2 B FE HEM . A HEM 501 1_555 C N39 1YN . A 1YN 502 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc3 B FE HEM . A HEM 501 1_555 C N39 1YN . A 1YN 502 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 222 n n 
CHA C4D HEM doub 223 n n 
CHA HHA HEM sing 224 n n 
CHB C4A HEM sing 225 n n 
CHB C1B HEM doub 226 n n 
CHB HHB HEM sing 227 n n 
CHC C4B HEM sing 228 n n 
CHC C1C HEM doub 229 n n 
CHC HHC HEM sing 230 n n 
CHD C4C HEM doub 231 n n 
CHD C1D HEM sing 232 n n 
CHD HHD HEM sing 233 n n 
C1A C2A HEM doub 234 n y 
C1A NA HEM sing 235 n y 
C2A C3A HEM sing 236 n y 
C2A CAA HEM sing 237 n n 
C3A C4A HEM doub 238 n y 
C3A CMA HEM sing 239 n n 
C4A NA HEM sing 240 n y 
CMA HMA HEM sing 241 n n 
CMA HMAA HEM sing 242 n n 
CMA HMAB HEM sing 243 n n 
CAA CBA HEM sing 244 n n 
CAA HAA HEM sing 245 n n 
CAA HAAA HEM sing 246 n n 
CBA CGA HEM sing 247 n n 
CBA HBA HEM sing 248 n n 
CBA HBAA HEM sing 249 n n 
CGA O1A HEM doub 250 n n 
CGA O2A HEM sing 251 n n 
C1B C2B HEM sing 252 n n 
C1B NB HEM sing 253 n n 
C2B C3B HEM doub 254 n n 
C2B CMB HEM sing 255 n n 
C3B C4B HEM sing 256 n n 
C3B CAB HEM sing 257 n n 
C4B NB HEM doub 258 n n 
CMB HMB HEM sing 259 n n 
CMB HMBA HEM sing 260 n n 
CMB HMBB HEM sing 261 n n 
CAB CBB HEM doub 262 n n 
CAB HAB HEM sing 263 n n 
CBB HBB HEM sing 264 n n 
CBB HBBA HEM sing 265 n n 
C1C C2C HEM sing 266 n y 
C1C NC HEM sing 267 n y 
C2C C3C HEM doub 268 n y 
C2C CMC HEM sing 269 n n 
C3C C4C HEM sing 270 n y 
C3C CAC HEM sing 271 n n 
C4C NC HEM sing 272 n y 
CMC HMC HEM sing 273 n n 
CMC HMCA HEM sing 274 n n 
CMC HMCB HEM sing 275 n n 
CAC CBC HEM doub 276 n n 
CAC HAC HEM sing 277 n n 
CBC HBC HEM sing 278 n n 
CBC HBCA HEM sing 279 n n 
C1D C2D HEM sing 280 n n 
C1D ND HEM doub 281 n n 
C2D C3D HEM doub 282 n n 
C2D CMD HEM sing 283 n n 
C3D C4D HEM sing 284 n n 
C3D CAD HEM sing 285 n n 
C4D ND HEM sing 286 n n 
CMD HMD HEM sing 287 n n 
CMD HMDA HEM sing 288 n n 
CMD HMDB HEM sing 289 n n 
CAD CBD HEM sing 290 n n 
CAD HAD HEM sing 291 n n 
CAD HADA HEM sing 292 n n 
CBD CGD HEM sing 293 n n 
CBD HBD HEM sing 294 n n 
CBD HBDA HEM sing 295 n n 
CGD O1D HEM doub 296 n n 
CGD O2D HEM sing 297 n n 
O2A H2A HEM sing 298 n n 
O2D H2D HEM sing 299 n n 
FE NA HEM sing 300 n n 
FE NB HEM sing 301 n n 
FE NC HEM sing 302 n n 
FE ND HEM sing 303 n n 
#
_atom_sites.entry_id                     6AYC 
_atom_sites.fract_transf_matrix[1][1]    0.008313 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001559 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018119 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014055 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 501 501 HEM HEB . 
C 3 1YN A 1 502 1 1YN ITR . 
D 4 HOH A 1 601 4 HOH HOH . 
D 4 HOH A 2 602 11 HOH HOH . 
D 4 HOH A 3 603 1 HOH HOH . 
D 4 HOH A 4 604 7 HOH HOH . 
D 4 HOH A 5 605 12 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 3 HOH HOH . 
D 4 HOH A 8 608 2 HOH HOH . 
D 4 HOH A 9 609 10 HOH HOH . 
D 4 HOH A 10 610 8 HOH HOH . 
D 4 HOH A 11 611 5 HOH HOH . 
D 4 HOH A 12 612 13 HOH HOH . 
D 4 HOH A 13 613 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 16.991 -5.964 23.623 1 67.4 ? CHA HEM 501 A 1 
HETATM 2 C CHB HEM . . . B 2 15.646 -1.504 22.029 1 76.9 ? CHB HEM 501 A 1 
HETATM 3 C CHC HEM . . . B 2 20.267 -0.215 21.861 1 79.66 ? CHC HEM 501 A 1 
HETATM 4 C CHD HEM . . . B 2 21.627 -4.799 22.784 1 80.98 ? CHD HEM 501 A 1 
HETATM 5 C C1A HEM . . . B 2 16.276 -4.781 23.24 1 71.85 ? C1A HEM 501 A 1 
HETATM 6 C C2A HEM . . . B 2 14.86 -4.842 23.298 1 79.42 ? C2A HEM 501 A 1 
HETATM 7 C C3A HEM . . . B 2 14.459 -3.571 22.828 1 82.78 ? C3A HEM 501 A 1 
HETATM 8 C C4A HEM . . . B 2 15.676 -2.879 22.501 1 78.32 ? C4A HEM 501 A 1 
HETATM 9 C CMA HEM . . . B 2 13.049 -3.196 22.7 1 83.12 ? CMA HEM 501 A 1 
HETATM 10 C CAA HEM . . . B 2 13.944 -5.919 23.738 1 80.63 ? CAA HEM 501 A 1 
HETATM 11 C CBA HEM . . . B 2 13.671 -6.916 22.623 1 85.7 ? CBA HEM 501 A 1 
HETATM 12 C CGA HEM . . . B 2 12.764 -8.031 23.072 1 89.6 ? CGA HEM 501 A 1 
HETATM 13 O O1A HEM . . . B 2 12.214 -8.76 22.215 1 92.85 ? O1A HEM 501 A 1 
HETATM 14 O O2A HEM . . . B 2 12.556 -8.208 24.291 1 95.39 ? O2A HEM 501 A 1 
HETATM 15 C C1B HEM . . . B 2 16.828 -0.72 21.863 1 78.33 ? C1B HEM 501 A 1 
HETATM 16 C C2B HEM . . . B 2 16.712 0.681 21.496 1 75.43 ? C2B HEM 501 A 1 
HETATM 17 C C3B HEM . . . B 2 18.125 1.047 21.425 1 78.26 ? C3B HEM 501 A 1 
HETATM 18 C C4B HEM . . . B 2 18.831 -0.175 21.796 1 73.96 ? C4B HEM 501 A 1 
HETATM 19 C CMB HEM . . . B 2 15.472 1.472 21.265 1 68.33 ? CMB HEM 501 A 1 
HETATM 20 C CAB HEM . . . B 2 18.797 2.341 21.121 1 77.88 ? CAB HEM 501 A 1 
HETATM 21 C CBB HEM . . . B 2 17.972 3.562 21.352 1 82.12 ? CBB HEM 501 A 1 
HETATM 22 C C1C HEM . . . B 2 21.044 -1.413 22.103 1 84.43 ? C1C HEM 501 A 1 
HETATM 23 C C2C HEM . . . B 2 22.475 -1.291 22.05 1 89 ? C2C HEM 501 A 1 
HETATM 24 C C3C HEM . . . B 2 22.897 -2.647 22.303 1 83.17 ? C3C HEM 501 A 1 
HETATM 25 C C4C HEM . . . B 2 21.669 -3.388 22.5 1 77.91 ? C4C HEM 501 A 1 
HETATM 26 C CMC HEM . . . B 2 23.242 -0.06 21.77 1 94.02 ? CMC HEM 501 A 1 
HETATM 27 C CAC HEM . . . B 2 24.266 -3.166 22.38 1 85.81 ? CAC HEM 501 A 1 
HETATM 28 C CBC HEM . . . B 2 25.367 -2.428 22.243 1 88.66 ? CBC HEM 501 A 1 
HETATM 29 C C1D HEM . . . B 2 20.396 -5.492 23.072 1 74.19 ? C1D HEM 501 A 1 
HETATM 30 C C2D HEM . . . B 2 20.532 -6.852 23.51 1 71.52 ? C2D HEM 501 A 1 
HETATM 31 C C3D HEM . . . B 2 19.167 -7.206 23.813 1 72.4 ? C3D HEM 501 A 1 
HETATM 32 C C4D HEM . . . B 2 18.412 -6.014 23.501 1 69.61 ? C4D HEM 501 A 1 
HETATM 33 C CMD HEM . . . B 2 21.77 -7.653 23.637 1 67.65 ? CMD HEM 501 A 1 
HETATM 34 C CAD HEM . . . B 2 18.713 -8.548 24.187 1 74.51 ? CAD HEM 501 A 1 
HETATM 35 C CBD HEM . . . B 2 18.365 -8.688 25.615 1 82.05 ? CBD HEM 501 A 1 
HETATM 36 C CGD HEM . . . B 2 17.901 -10.12 25.787 1 86.95 ? CGD HEM 501 A 1 
HETATM 37 O O1D HEM . . . B 2 17.284 -10.75 24.888 1 81.21 ? O1D HEM 501 A 1 
HETATM 38 O O2D HEM . . . B 2 18.158 -10.628 26.892 1 92.52 ? O2D HEM 501 A 1 
HETATM 39 N NA HEM . . . B 2 16.706 -3.634 22.765 1 73.27 ? NA HEM 501 A 1 
HETATM 40 N NB HEM . . . B 2 18.064 -1.207 22.024 1 75.35 ? NB HEM 501 A 1 
HETATM 41 N NC HEM . . . B 2 20.604 -2.629 22.36 1 77.64 ? NC HEM 501 A 1 
HETATM 42 N ND HEM . . . B 2 19.177 -5.012 23.09 1 70.78 ? ND HEM 501 A 1 
HETATM 43 FE FE HEM . . . B 2 18.642 -3.125 22.555 1 73.47 ? FE HEM 501 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           43 
#