data_6AYR
#
_model_server_result.job_id            Dsp1YrPExTf6jTUy5eH6Pg 
_model_server_result.datetime_utc      '2024-11-09 01:29:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ayr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    6AYR 
#
_exptl.entry_id    6AYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.97 
_cell.angle_gamma         90 
_cell.entry_id            6AYR 
_cell.length_a            68.156 
_cell.length_b            91.407 
_cell.length_c            78.431 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 133 n n 
C1 C2 EDO sing 134 n n 
C1 H11 EDO sing 135 n n 
C1 H12 EDO sing 136 n n 
O1 HO1 EDO sing 137 n n 
C2 O2 EDO sing 138 n n 
C2 H21 EDO sing 139 n n 
C2 H22 EDO sing 140 n n 
O2 HO2 EDO sing 141 n n 
#
_atom_sites.entry_id                     6AYR 
_atom_sites.fract_transf_matrix[1][1]    0.014672 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005331 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01094 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BIG A 1 301 3 BIG BIG . 
F 3 EDO A 1 302 2 EDO EDO . 
G 2 BIG B 1 301 2 BIG BIG . 
H 2 BIG C 1 301 4 BIG BIG . 
I 3 EDO C 1 302 3 EDO EDO . 
J 2 BIG D 1 301 1 BIG BIG . 
K 3 EDO D 1 302 1 EDO EDO . 
L 4 HOH A 1 401 559 HOH HOH . 
L 4 HOH A 2 402 79 HOH HOH . 
L 4 HOH A 3 403 85 HOH HOH . 
L 4 HOH A 4 404 568 HOH HOH . 
L 4 HOH A 5 405 558 HOH HOH . 
L 4 HOH A 6 406 313 HOH HOH . 
L 4 HOH A 7 407 213 HOH HOH . 
L 4 HOH A 8 408 385 HOH HOH . 
L 4 HOH A 9 409 555 HOH HOH . 
L 4 HOH A 10 410 156 HOH HOH . 
L 4 HOH A 11 411 116 HOH HOH . 
L 4 HOH A 12 412 171 HOH HOH . 
L 4 HOH A 13 413 10 HOH HOH . 
L 4 HOH A 14 414 229 HOH HOH . 
L 4 HOH A 15 415 581 HOH HOH . 
L 4 HOH A 16 416 77 HOH HOH . 
L 4 HOH A 17 417 65 HOH HOH . 
L 4 HOH A 18 418 33 HOH HOH . 
L 4 HOH A 19 419 161 HOH HOH . 
L 4 HOH A 20 420 92 HOH HOH . 
L 4 HOH A 21 421 350 HOH HOH . 
L 4 HOH A 22 422 129 HOH HOH . 
L 4 HOH A 23 423 88 HOH HOH . 
L 4 HOH A 24 424 177 HOH HOH . 
L 4 HOH A 25 425 207 HOH HOH . 
L 4 HOH A 26 426 96 HOH HOH . 
L 4 HOH A 27 427 284 HOH HOH . 
L 4 HOH A 28 428 199 HOH HOH . 
L 4 HOH A 29 429 1 HOH HOH . 
L 4 HOH A 30 430 388 HOH HOH . 
L 4 HOH A 31 431 409 HOH HOH . 
L 4 HOH A 32 432 104 HOH HOH . 
L 4 HOH A 33 433 67 HOH HOH . 
L 4 HOH A 34 434 226 HOH HOH . 
L 4 HOH A 35 435 43 HOH HOH . 
L 4 HOH A 36 436 238 HOH HOH . 
L 4 HOH A 37 437 61 HOH HOH . 
L 4 HOH A 38 438 21 HOH HOH . 
L 4 HOH A 39 439 141 HOH HOH . 
L 4 HOH A 40 440 3 HOH HOH . 
L 4 HOH A 41 441 544 HOH HOH . 
L 4 HOH A 42 442 103 HOH HOH . 
L 4 HOH A 43 443 101 HOH HOH . 
L 4 HOH A 44 444 158 HOH HOH . 
L 4 HOH A 45 445 137 HOH HOH . 
L 4 HOH A 46 446 494 HOH HOH . 
L 4 HOH A 47 447 251 HOH HOH . 
L 4 HOH A 48 448 7 HOH HOH . 
L 4 HOH A 49 449 167 HOH HOH . 
L 4 HOH A 50 450 45 HOH HOH . 
L 4 HOH A 51 451 298 HOH HOH . 
L 4 HOH A 52 452 255 HOH HOH . 
L 4 HOH A 53 453 164 HOH HOH . 
L 4 HOH A 54 454 143 HOH HOH . 
L 4 HOH A 55 455 263 HOH HOH . 
L 4 HOH A 56 456 233 HOH HOH . 
L 4 HOH A 57 457 208 HOH HOH . 
L 4 HOH A 58 458 216 HOH HOH . 
L 4 HOH A 59 459 147 HOH HOH . 
L 4 HOH A 60 460 20 HOH HOH . 
L 4 HOH A 61 461 37 HOH HOH . 
L 4 HOH A 62 462 42 HOH HOH . 
L 4 HOH A 63 463 106 HOH HOH . 
L 4 HOH A 64 464 19 HOH HOH . 
L 4 HOH A 65 465 375 HOH HOH . 
L 4 HOH A 66 466 48 HOH HOH . 
L 4 HOH A 67 467 12 HOH HOH . 
L 4 HOH A 68 468 328 HOH HOH . 
L 4 HOH A 69 469 83 HOH HOH . 
L 4 HOH A 70 470 172 HOH HOH . 
L 4 HOH A 71 471 40 HOH HOH . 
L 4 HOH A 72 472 222 HOH HOH . 
L 4 HOH A 73 473 23 HOH HOH . 
L 4 HOH A 74 474 25 HOH HOH . 
L 4 HOH A 75 475 44 HOH HOH . 
L 4 HOH A 76 476 132 HOH HOH . 
L 4 HOH A 77 477 95 HOH HOH . 
L 4 HOH A 78 478 567 HOH HOH . 
L 4 HOH A 79 479 512 HOH HOH . 
L 4 HOH A 80 480 22 HOH HOH . 
L 4 HOH A 81 481 250 HOH HOH . 
L 4 HOH A 82 482 566 HOH HOH . 
L 4 HOH A 83 483 528 HOH HOH . 
L 4 HOH A 84 484 517 HOH HOH . 
L 4 HOH A 85 485 194 HOH HOH . 
L 4 HOH A 86 486 184 HOH HOH . 
L 4 HOH A 87 487 114 HOH HOH . 
L 4 HOH A 88 488 330 HOH HOH . 
L 4 HOH A 89 489 338 HOH HOH . 
L 4 HOH A 90 490 554 HOH HOH . 
M 4 HOH B 1 401 312 HOH HOH . 
M 4 HOH B 2 402 47 HOH HOH . 
M 4 HOH B 3 403 59 HOH HOH . 
M 4 HOH B 4 404 533 HOH HOH . 
M 4 HOH B 5 405 60 HOH HOH . 
M 4 HOH B 6 406 537 HOH HOH . 
M 4 HOH B 7 407 560 HOH HOH . 
M 4 HOH B 8 408 574 HOH HOH . 
M 4 HOH B 9 409 113 HOH HOH . 
M 4 HOH B 10 410 380 HOH HOH . 
M 4 HOH B 11 411 563 HOH HOH . 
M 4 HOH B 12 412 551 HOH HOH . 
M 4 HOH B 13 413 102 HOH HOH . 
M 4 HOH B 14 414 170 HOH HOH . 
M 4 HOH B 15 415 212 HOH HOH . 
M 4 HOH B 16 416 97 HOH HOH . 
M 4 HOH B 17 417 575 HOH HOH . 
M 4 HOH B 18 418 466 HOH HOH . 
M 4 HOH B 19 419 539 HOH HOH . 
M 4 HOH B 20 420 9 HOH HOH . 
M 4 HOH B 21 421 93 HOH HOH . 
M 4 HOH B 22 422 242 HOH HOH . 
M 4 HOH B 23 423 548 HOH HOH . 
M 4 HOH B 24 424 27 HOH HOH . 
M 4 HOH B 25 425 204 HOH HOH . 
M 4 HOH B 26 426 243 HOH HOH . 
M 4 HOH B 27 427 81 HOH HOH . 
M 4 HOH B 28 428 562 HOH HOH . 
M 4 HOH B 29 429 149 HOH HOH . 
M 4 HOH B 30 430 13 HOH HOH . 
M 4 HOH B 31 431 543 HOH HOH . 
M 4 HOH B 32 432 119 HOH HOH . 
M 4 HOH B 33 433 540 HOH HOH . 
M 4 HOH B 34 434 331 HOH HOH . 
M 4 HOH B 35 435 189 HOH HOH . 
M 4 HOH B 36 436 11 HOH HOH . 
M 4 HOH B 37 437 538 HOH HOH . 
M 4 HOH B 38 438 182 HOH HOH . 
M 4 HOH B 39 439 56 HOH HOH . 
M 4 HOH B 40 440 53 HOH HOH . 
M 4 HOH B 41 441 50 HOH HOH . 
M 4 HOH B 42 442 556 HOH HOH . 
M 4 HOH B 43 443 545 HOH HOH . 
M 4 HOH B 44 444 118 HOH HOH . 
M 4 HOH B 45 445 505 HOH HOH . 
M 4 HOH B 46 446 28 HOH HOH . 
M 4 HOH B 47 447 35 HOH HOH . 
M 4 HOH B 48 448 72 HOH HOH . 
M 4 HOH B 49 449 36 HOH HOH . 
M 4 HOH B 50 450 323 HOH HOH . 
M 4 HOH B 51 451 549 HOH HOH . 
M 4 HOH B 52 452 175 HOH HOH . 
M 4 HOH B 53 453 287 HOH HOH . 
M 4 HOH B 54 454 71 HOH HOH . 
M 4 HOH B 55 455 51 HOH HOH . 
M 4 HOH B 56 456 236 HOH HOH . 
M 4 HOH B 57 457 150 HOH HOH . 
M 4 HOH B 58 458 66 HOH HOH . 
M 4 HOH B 59 459 241 HOH HOH . 
M 4 HOH B 60 460 80 HOH HOH . 
M 4 HOH B 61 461 54 HOH HOH . 
M 4 HOH B 62 462 5 HOH HOH . 
M 4 HOH B 63 463 214 HOH HOH . 
M 4 HOH B 64 464 166 HOH HOH . 
M 4 HOH B 65 465 8 HOH HOH . 
M 4 HOH B 66 466 286 HOH HOH . 
M 4 HOH B 67 467 305 HOH HOH . 
M 4 HOH B 68 468 148 HOH HOH . 
M 4 HOH B 69 469 240 HOH HOH . 
M 4 HOH B 70 470 532 HOH HOH . 
M 4 HOH B 71 471 515 HOH HOH . 
M 4 HOH B 72 472 107 HOH HOH . 
M 4 HOH B 73 473 326 HOH HOH . 
M 4 HOH B 74 474 108 HOH HOH . 
M 4 HOH B 75 475 577 HOH HOH . 
M 4 HOH B 76 476 17 HOH HOH . 
M 4 HOH B 77 477 290 HOH HOH . 
M 4 HOH B 78 478 510 HOH HOH . 
M 4 HOH B 79 479 69 HOH HOH . 
M 4 HOH B 80 480 582 HOH HOH . 
M 4 HOH B 81 481 509 HOH HOH . 
M 4 HOH B 82 482 522 HOH HOH . 
M 4 HOH B 83 483 205 HOH HOH . 
M 4 HOH B 84 484 300 HOH HOH . 
M 4 HOH B 85 485 206 HOH HOH . 
M 4 HOH B 86 486 506 HOH HOH . 
N 4 HOH C 1 401 541 HOH HOH . 
N 4 HOH C 2 402 26 HOH HOH . 
N 4 HOH C 3 403 2 HOH HOH . 
N 4 HOH C 4 404 571 HOH HOH . 
N 4 HOH C 5 405 535 HOH HOH . 
N 4 HOH C 6 406 362 HOH HOH . 
N 4 HOH C 7 407 197 HOH HOH . 
N 4 HOH C 8 408 115 HOH HOH . 
N 4 HOH C 9 409 125 HOH HOH . 
N 4 HOH C 10 410 145 HOH HOH . 
N 4 HOH C 11 411 98 HOH HOH . 
N 4 HOH C 12 412 564 HOH HOH . 
N 4 HOH C 13 413 580 HOH HOH . 
N 4 HOH C 14 414 70 HOH HOH . 
N 4 HOH C 15 415 62 HOH HOH . 
N 4 HOH C 16 416 264 HOH HOH . 
N 4 HOH C 17 417 49 HOH HOH . 
N 4 HOH C 18 418 479 HOH HOH . 
N 4 HOH C 19 419 272 HOH HOH . 
N 4 HOH C 20 420 100 HOH HOH . 
N 4 HOH C 21 421 153 HOH HOH . 
N 4 HOH C 22 422 275 HOH HOH . 
N 4 HOH C 23 423 14 HOH HOH . 
N 4 HOH C 24 424 126 HOH HOH . 
N 4 HOH C 25 425 18 HOH HOH . 
N 4 HOH C 26 426 82 HOH HOH . 
N 4 HOH C 27 427 180 HOH HOH . 
N 4 HOH C 28 428 230 HOH HOH . 
N 4 HOH C 29 429 52 HOH HOH . 
N 4 HOH C 30 430 89 HOH HOH . 
N 4 HOH C 31 431 78 HOH HOH . 
N 4 HOH C 32 432 299 HOH HOH . 
N 4 HOH C 33 433 29 HOH HOH . 
N 4 HOH C 34 434 165 HOH HOH . 
N 4 HOH C 35 435 261 HOH HOH . 
N 4 HOH C 36 436 183 HOH HOH . 
N 4 HOH C 37 437 421 HOH HOH . 
N 4 HOH C 38 438 542 HOH HOH . 
N 4 HOH C 39 439 252 HOH HOH . 
N 4 HOH C 40 440 570 HOH HOH . 
N 4 HOH C 41 441 38 HOH HOH . 
N 4 HOH C 42 442 75 HOH HOH . 
N 4 HOH C 43 443 583 HOH HOH . 
N 4 HOH C 44 444 246 HOH HOH . 
N 4 HOH C 45 445 41 HOH HOH . 
N 4 HOH C 46 446 576 HOH HOH . 
N 4 HOH C 47 447 32 HOH HOH . 
N 4 HOH C 48 448 552 HOH HOH . 
N 4 HOH C 49 449 217 HOH HOH . 
N 4 HOH C 50 450 579 HOH HOH . 
N 4 HOH C 51 451 578 HOH HOH . 
N 4 HOH C 52 452 550 HOH HOH . 
N 4 HOH C 53 453 553 HOH HOH . 
O 4 HOH D 1 401 534 HOH HOH . 
O 4 HOH D 2 402 546 HOH HOH . 
O 4 HOH D 3 403 569 HOH HOH . 
O 4 HOH D 4 404 55 HOH HOH . 
O 4 HOH D 5 405 64 HOH HOH . 
O 4 HOH D 6 406 561 HOH HOH . 
O 4 HOH D 7 407 68 HOH HOH . 
O 4 HOH D 8 408 34 HOH HOH . 
O 4 HOH D 9 409 90 HOH HOH . 
O 4 HOH D 10 410 377 HOH HOH . 
O 4 HOH D 11 411 343 HOH HOH . 
O 4 HOH D 12 412 123 HOH HOH . 
O 4 HOH D 13 413 135 HOH HOH . 
O 4 HOH D 14 414 283 HOH HOH . 
O 4 HOH D 15 415 584 HOH HOH . 
O 4 HOH D 16 416 136 HOH HOH . 
O 4 HOH D 17 417 295 HOH HOH . 
O 4 HOH D 18 418 547 HOH HOH . 
O 4 HOH D 19 419 220 HOH HOH . 
O 4 HOH D 20 420 187 HOH HOH . 
O 4 HOH D 21 421 198 HOH HOH . 
O 4 HOH D 22 422 84 HOH HOH . 
O 4 HOH D 23 423 557 HOH HOH . 
O 4 HOH D 24 424 572 HOH HOH . 
O 4 HOH D 25 425 565 HOH HOH . 
O 4 HOH D 26 426 16 HOH HOH . 
O 4 HOH D 27 427 111 HOH HOH . 
O 4 HOH D 28 428 193 HOH HOH . 
O 4 HOH D 29 429 176 HOH HOH . 
O 4 HOH D 30 430 39 HOH HOH . 
O 4 HOH D 31 431 30 HOH HOH . 
O 4 HOH D 32 432 46 HOH HOH . 
O 4 HOH D 33 433 573 HOH HOH . 
O 4 HOH D 34 434 91 HOH HOH . 
O 4 HOH D 35 435 335 HOH HOH . 
O 4 HOH D 36 436 58 HOH HOH . 
O 4 HOH D 37 437 513 HOH HOH . 
O 4 HOH D 38 438 269 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 64.174 25.786 49.447 1 55.8 ? C1 EDO 302 A 1 
HETATM 2 O O1 EDO . . . F 3 64.661 24.593 50.08 1 55.78 ? O1 EDO 302 A 1 
HETATM 3 C C2 EDO . . . F 3 65.336 26.524 48.8 1 56.53 ? C2 EDO 302 A 1 
HETATM 4 O O2 EDO . . . F 3 66.386 26.723 49.761 1 59.05 ? O2 EDO 302 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           4 
#