data_6AYU # _model_server_result.job_id U8CZq37pxca1ocMvthPOgA _model_server_result.datetime_utc '2024-10-19 08:24:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ayu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6AYU # _exptl.entry_id 6AYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AYU _cell.length_a 130.89 _cell.length_b 130.89 _cell.length_c 142.848 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 65.445 113.354065 -23.808 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 98 A ASP 79 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A OD1 ASP 101 A ASP 82 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc3 A O SER 208 A SER 189 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc4 A O ALA 209 A ALA 190 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc5 A O ARG 211 A ARG 192 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 A OG SER 214 A SER 195 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc7 A O THR 216 A THR 197 1_555 H MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc8 A OE2 GLU 227 A GLU 208 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc9 D MG MG . A MG 402 1_555 I O2 GOL . A GOL 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc10 B OD2 ASP 98 B ASP 79 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc11 B OD1 ASP 101 B ASP 82 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc12 B OE2 GLU 227 B GLU 208 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 83 n n O1 HO1 F6P sing 84 n n C1 C2 F6P sing 85 n n C1 H11 F6P sing 86 n n C1 H12 F6P sing 87 n n C2 O2 F6P sing 88 n n C2 C3 F6P sing 89 n n C2 O5 F6P sing 90 n n O2 HO2 F6P sing 91 n n C3 O3 F6P sing 92 n n C3 C4 F6P sing 93 n n C3 H3 F6P sing 94 n n O3 HO3 F6P sing 95 n n C4 O4 F6P sing 96 n n C4 C5 F6P sing 97 n n C4 H4 F6P sing 98 n n O4 HO4 F6P sing 99 n n C5 O5 F6P sing 100 n n C5 C6 F6P sing 101 n n C5 H5 F6P sing 102 n n C6 O6 F6P sing 103 n n C6 H61 F6P sing 104 n n C6 H62 F6P sing 105 n n O6 P F6P sing 106 n n P O1P F6P doub 107 n n P O2P F6P sing 108 n n P O3P F6P sing 109 n n O2P HOP2 F6P sing 110 n n O3P HOP3 F6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6AYU _atom_sites.fract_transf_matrix[1][1] 0.00764 _atom_sites.fract_transf_matrix[1][2] 0.004411 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F6P A 1 401 401 F6P F6P . D 3 MG A 1 402 402 MG MG . E 4 MLI A 1 403 403 MLI MLI . F 5 GOL A 1 404 404 GOL GOL . G 5 GOL A 1 405 405 GOL GOL . H 3 MG A 1 406 406 MG MG . I 5 GOL A 1 407 407 GOL GOL . J 2 F6P B 1 401 401 F6P F6P . K 5 GOL B 1 402 402 GOL GOL . L 3 MG B 1 403 403 MG MG . M 5 GOL B 1 404 404 GOL GOL . N 5 GOL B 1 405 405 GOL GOL . O 5 GOL B 1 406 406 GOL GOL . P 6 HOH A 1 501 501 HOH HOH . P 6 HOH A 2 502 502 HOH HOH . P 6 HOH A 3 503 503 HOH HOH . P 6 HOH A 4 504 504 HOH HOH . P 6 HOH A 5 505 505 HOH HOH . P 6 HOH A 6 506 506 HOH HOH . P 6 HOH A 7 507 507 HOH HOH . P 6 HOH A 8 508 508 HOH HOH . P 6 HOH A 9 509 509 HOH HOH . P 6 HOH A 10 510 510 HOH HOH . P 6 HOH A 11 511 511 HOH HOH . P 6 HOH A 12 512 512 HOH HOH . P 6 HOH A 13 513 513 HOH HOH . P 6 HOH A 14 514 514 HOH HOH . P 6 HOH A 15 515 515 HOH HOH . P 6 HOH A 16 516 516 HOH HOH . P 6 HOH A 17 517 517 HOH HOH . P 6 HOH A 18 518 518 HOH HOH . P 6 HOH A 19 519 519 HOH HOH . P 6 HOH A 20 520 520 HOH HOH . P 6 HOH A 21 521 521 HOH HOH . P 6 HOH A 22 522 522 HOH HOH . P 6 HOH A 23 523 523 HOH HOH . P 6 HOH A 24 524 524 HOH HOH . P 6 HOH A 25 525 525 HOH HOH . P 6 HOH A 26 526 526 HOH HOH . P 6 HOH A 27 527 527 HOH HOH . P 6 HOH A 28 528 528 HOH HOH . P 6 HOH A 29 529 529 HOH HOH . P 6 HOH A 30 530 530 HOH HOH . P 6 HOH A 31 531 531 HOH HOH . P 6 HOH A 32 532 532 HOH HOH . P 6 HOH A 33 533 533 HOH HOH . P 6 HOH A 34 534 534 HOH HOH . P 6 HOH A 35 535 535 HOH HOH . P 6 HOH A 36 536 536 HOH HOH . P 6 HOH A 37 537 537 HOH HOH . P 6 HOH A 38 538 538 HOH HOH . P 6 HOH A 39 539 539 HOH HOH . P 6 HOH A 40 540 540 HOH HOH . P 6 HOH A 41 541 541 HOH HOH . P 6 HOH A 42 542 542 HOH HOH . P 6 HOH A 43 543 543 HOH HOH . P 6 HOH A 44 544 544 HOH HOH . P 6 HOH A 45 545 545 HOH HOH . P 6 HOH A 46 546 546 HOH HOH . P 6 HOH A 47 547 547 HOH HOH . P 6 HOH A 48 548 548 HOH HOH . P 6 HOH A 49 549 549 HOH HOH . P 6 HOH A 50 550 550 HOH HOH . P 6 HOH A 51 551 551 HOH HOH . P 6 HOH A 52 552 552 HOH HOH . P 6 HOH A 53 553 553 HOH HOH . P 6 HOH A 54 554 554 HOH HOH . P 6 HOH A 55 555 555 HOH HOH . P 6 HOH A 56 556 556 HOH HOH . P 6 HOH A 57 557 557 HOH HOH . P 6 HOH A 58 558 558 HOH HOH . P 6 HOH A 59 559 559 HOH HOH . P 6 HOH A 60 560 560 HOH HOH . P 6 HOH A 61 561 561 HOH HOH . P 6 HOH A 62 562 562 HOH HOH . P 6 HOH A 63 563 563 HOH HOH . P 6 HOH A 64 564 564 HOH HOH . P 6 HOH A 65 565 565 HOH HOH . P 6 HOH A 66 566 566 HOH HOH . P 6 HOH A 67 567 567 HOH HOH . P 6 HOH A 68 568 568 HOH HOH . P 6 HOH A 69 569 569 HOH HOH . P 6 HOH A 70 570 570 HOH HOH . P 6 HOH A 71 571 571 HOH HOH . P 6 HOH A 72 572 572 HOH HOH . P 6 HOH A 73 573 573 HOH HOH . P 6 HOH A 74 574 574 HOH HOH . P 6 HOH A 75 575 575 HOH HOH . P 6 HOH A 76 576 576 HOH HOH . P 6 HOH A 77 577 577 HOH HOH . P 6 HOH A 78 578 578 HOH HOH . P 6 HOH A 79 579 579 HOH HOH . P 6 HOH A 80 580 580 HOH HOH . Q 6 HOH B 1 501 501 HOH HOH . Q 6 HOH B 2 502 502 HOH HOH . Q 6 HOH B 3 503 503 HOH HOH . Q 6 HOH B 4 504 504 HOH HOH . Q 6 HOH B 5 505 505 HOH HOH . Q 6 HOH B 6 506 506 HOH HOH . Q 6 HOH B 7 507 507 HOH HOH . Q 6 HOH B 8 508 508 HOH HOH . Q 6 HOH B 9 509 509 HOH HOH . Q 6 HOH B 10 510 510 HOH HOH . Q 6 HOH B 11 511 511 HOH HOH . Q 6 HOH B 12 512 512 HOH HOH . Q 6 HOH B 13 513 513 HOH HOH . Q 6 HOH B 14 514 514 HOH HOH . Q 6 HOH B 15 515 515 HOH HOH . Q 6 HOH B 16 516 516 HOH HOH . Q 6 HOH B 17 517 517 HOH HOH . Q 6 HOH B 18 518 518 HOH HOH . Q 6 HOH B 19 519 519 HOH HOH . Q 6 HOH B 20 520 520 HOH HOH . Q 6 HOH B 21 521 521 HOH HOH . Q 6 HOH B 22 522 522 HOH HOH . Q 6 HOH B 23 523 523 HOH HOH . Q 6 HOH B 24 524 524 HOH HOH . Q 6 HOH B 25 525 525 HOH HOH . Q 6 HOH B 26 526 526 HOH HOH . Q 6 HOH B 27 527 527 HOH HOH . Q 6 HOH B 28 528 528 HOH HOH . Q 6 HOH B 29 529 529 HOH HOH . Q 6 HOH B 30 530 530 HOH HOH . Q 6 HOH B 31 531 531 HOH HOH . Q 6 HOH B 32 532 532 HOH HOH . Q 6 HOH B 33 533 533 HOH HOH . Q 6 HOH B 34 534 534 HOH HOH . Q 6 HOH B 35 535 535 HOH HOH . Q 6 HOH B 36 536 536 HOH HOH . Q 6 HOH B 37 537 537 HOH HOH . Q 6 HOH B 38 538 538 HOH HOH . Q 6 HOH B 39 539 539 HOH HOH . Q 6 HOH B 40 540 540 HOH HOH . Q 6 HOH B 41 541 541 HOH HOH . Q 6 HOH B 42 542 542 HOH HOH . Q 6 HOH B 43 543 543 HOH HOH . Q 6 HOH B 44 544 544 HOH HOH . Q 6 HOH B 45 545 545 HOH HOH . Q 6 HOH B 46 546 546 HOH HOH . Q 6 HOH B 47 547 547 HOH HOH . Q 6 HOH B 48 548 548 HOH HOH . Q 6 HOH B 49 549 549 HOH HOH . Q 6 HOH B 50 550 550 HOH HOH . Q 6 HOH B 51 551 551 HOH HOH . Q 6 HOH B 52 552 552 HOH HOH . Q 6 HOH B 53 553 553 HOH HOH . Q 6 HOH B 54 554 554 HOH HOH . Q 6 HOH B 55 555 555 HOH HOH . Q 6 HOH B 56 556 556 HOH HOH . Q 6 HOH B 57 557 557 HOH HOH . Q 6 HOH B 58 558 558 HOH HOH . Q 6 HOH B 59 559 559 HOH HOH . Q 6 HOH B 60 560 560 HOH HOH . Q 6 HOH B 61 561 561 HOH HOH . Q 6 HOH B 62 562 562 HOH HOH . Q 6 HOH B 63 563 563 HOH HOH . Q 6 HOH B 64 564 564 HOH HOH . Q 6 HOH B 65 565 565 HOH HOH . Q 6 HOH B 66 566 566 HOH HOH . Q 6 HOH B 67 567 567 HOH HOH . Q 6 HOH B 68 568 568 HOH HOH . Q 6 HOH B 69 569 569 HOH HOH . Q 6 HOH B 70 570 570 HOH HOH . Q 6 HOH B 71 571 571 HOH HOH . Q 6 HOH B 72 572 572 HOH HOH . Q 6 HOH B 73 573 573 HOH HOH . Q 6 HOH B 74 574 574 HOH HOH . Q 6 HOH B 75 575 575 HOH HOH . Q 6 HOH B 76 576 576 HOH HOH . Q 6 HOH B 77 577 577 HOH HOH . Q 6 HOH B 78 578 578 HOH HOH . Q 6 HOH B 79 579 579 HOH HOH . Q 6 HOH B 80 580 580 HOH HOH . Q 6 HOH B 81 581 581 HOH HOH . Q 6 HOH B 82 582 582 HOH HOH . Q 6 HOH B 83 583 583 HOH HOH . Q 6 HOH B 84 584 584 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . C 2 11.847 50.415 14.704 1 66.99 ? O1 F6P 401 A 1 HETATM 2 C C1 F6P . . . C 2 11.461 50.363 13.347 1 59.6 ? C1 F6P 401 A 1 HETATM 3 C C2 F6P . . . C 2 9.962 50.658 13.118 1 61.26 ? C2 F6P 401 A 1 HETATM 4 O O2 F6P . . . C 2 9.548 50.176 11.808 1 51.98 ? O2 F6P 401 A 1 HETATM 5 C C3 F6P . . . C 2 9.6 52.126 13.122 1 49.24 ? C3 F6P 401 A 1 HETATM 6 O O3 F6P . . . C 2 9.89 52.745 11.883 1 45.33 ? O3 F6P 401 A 1 HETATM 7 C C4 F6P . . . C 2 8.105 52.065 13.406 1 48.36 ? C4 F6P 401 A 1 HETATM 8 O O4 F6P . . . C 2 7.689 53.262 13.989 1 39.93 ? O4 F6P 401 A 1 HETATM 9 C C5 F6P . . . C 2 7.983 50.883 14.356 1 61.39 ? C5 F6P 401 A 1 HETATM 10 O O5 F6P . . . C 2 9.112 50.059 14.097 1 66.68 ? O5 F6P 401 A 1 HETATM 11 C C6 F6P . . . C 2 6.68 50.093 14.189 1 56.55 ? C6 F6P 401 A 1 HETATM 12 O O6 F6P . . . C 2 6.465 49.263 15.313 1 62.32 ? O6 F6P 401 A 1 HETATM 13 P P F6P . . . C 2 6.401 47.65 15.175 1 71.9 ? P F6P 401 A 1 HETATM 14 O O1P F6P . . . C 2 5.237 47.275 14.283 1 57.53 ? O1P F6P 401 A 1 HETATM 15 O O2P F6P . . . C 2 6.187 47.011 16.529 1 71.27 ? O2P F6P 401 A 1 HETATM 16 O O3P F6P . . . C 2 7.711 47.123 14.613 1 70.94 ? O3P F6P 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #