data_6AZ0 # _model_server_result.job_id 8tfNNYbhDHfFwt5Z1JGA7Q _model_server_result.datetime_utc '2025-07-04 11:45:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6az0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":801}' # _entry.id 6AZ0 # _exptl.entry_id 6AZ0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AZ0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 L N N ? 4 O N N ? 4 Q N N ? 4 U N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 262 A HIS 540 1_555 I ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 A NE2 HIS 266 A HIS 544 1_555 I ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 A OD1 ASP 340 A ASP 618 1_555 I ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc4 A OD2 ASP 340 A ASP 618 1_555 I ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 H O2G ATP . A ATP 801 1_555 J MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc6 H O3G ATP . A ATP 801 1_555 J MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc7 H O2B ATP . A ATP 801 1_555 J MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 H O2A ATP . A ATP 801 1_555 J MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc9 B OD2 ASP 102 B ASP 380 1_555 M MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc10 B NE2 HIS 262 B HIS 540 1_555 L ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc11 B NE2 HIS 266 B HIS 544 1_555 L ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc12 B OD1 ASP 340 B ASP 618 1_555 L ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc13 B OD2 ASP 340 B ASP 618 1_555 L ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc14 K O2B ATP . B ATP 801 1_555 M MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc15 C OG1 THR 50 C THR 328 1_555 P MG MG . C MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc16 C NE2 HIS 262 C HIS 540 1_555 O ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc17 C NE2 HIS 266 C HIS 544 1_555 O ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc18 C OD1 ASP 340 C ASP 618 1_555 O ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc19 C OD2 ASP 340 C ASP 618 1_555 O ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc20 N O2B ATP . C ATP 801 1_555 P MG MG . C MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc21 D OG1 THR 50 D THR 328 1_555 R MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc22 D NE2 HIS 262 D HIS 540 1_555 Q ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc23 D NE2 HIS 266 D HIS 544 1_555 Q ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc24 D OD2 ASP 340 D ASP 618 1_555 Q ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc25 R MG MG . D MG 802 1_555 S O2B ATP . D ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc26 E NE2 HIS 262 E HIS 540 1_555 U ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc27 E NE2 HIS 266 E HIS 544 1_555 U ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc28 E OD1 ASP 340 E ASP 618 1_555 U ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc29 E OD2 ASP 340 E ASP 618 1_555 U ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc30 F NE2 HIS 262 F HIS 540 1_555 V ZN ZN . F ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc31 F NE2 HIS 266 F HIS 544 1_555 V ZN ZN . F ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6AZ0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 801 800 ATP ATP . I 4 ZN A 1 802 999 ZN ZN . J 5 MG A 1 803 899 MG MG . K 3 ATP B 1 801 802 ATP ATP . L 4 ZN B 1 802 999 ZN ZN . M 5 MG B 1 803 899 MG MG . N 3 ATP C 1 801 801 ATP ATP . O 4 ZN C 1 802 999 ZN ZN . P 5 MG C 1 803 899 MG MG . Q 4 ZN D 1 801 999 ZN ZN . R 5 MG D 1 802 899 MG MG . S 3 ATP D 1 803 799 ATP ATP . T 6 ADP E 1 801 799 ADP ADP . U 4 ZN E 1 802 999 ZN ZN . V 4 ZN F 1 801 999 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 4 _atom_site.Cartn_x 51.355 _atom_site.Cartn_y 61.639 _atom_site.Cartn_z 50.604 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 110.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 801 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 138 _model_server_stats.query_time_ms 2337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #