data_6AZ0 # _model_server_result.job_id iU1e-GkLX_wqCDJxMzewyg _model_server_result.datetime_utc '2025-07-06 19:17:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6az0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":803}' # _entry.id 6AZ0 # _exptl.entry_id 6AZ0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AZ0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 N N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 262 A HIS 540 1_555 I ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 A NE2 HIS 266 A HIS 544 1_555 I ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 A OD1 ASP 340 A ASP 618 1_555 I ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc4 A OD2 ASP 340 A ASP 618 1_555 I ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 H O2G ATP . A ATP 801 1_555 J MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc6 H O3G ATP . A ATP 801 1_555 J MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc7 H O2B ATP . A ATP 801 1_555 J MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 H O2A ATP . A ATP 801 1_555 J MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc9 B OD2 ASP 102 B ASP 380 1_555 M MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc10 B NE2 HIS 262 B HIS 540 1_555 L ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc11 B NE2 HIS 266 B HIS 544 1_555 L ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc12 B OD1 ASP 340 B ASP 618 1_555 L ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc13 B OD2 ASP 340 B ASP 618 1_555 L ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc14 K O2B ATP . B ATP 801 1_555 M MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc15 C OG1 THR 50 C THR 328 1_555 P MG MG . C MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc16 C NE2 HIS 262 C HIS 540 1_555 O ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc17 C NE2 HIS 266 C HIS 544 1_555 O ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc18 C OD1 ASP 340 C ASP 618 1_555 O ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc19 C OD2 ASP 340 C ASP 618 1_555 O ZN ZN . C ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc20 N O2B ATP . C ATP 801 1_555 P MG MG . C MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc21 D OG1 THR 50 D THR 328 1_555 R MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc22 D NE2 HIS 262 D HIS 540 1_555 Q ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc23 D NE2 HIS 266 D HIS 544 1_555 Q ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc24 D OD2 ASP 340 D ASP 618 1_555 Q ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc25 R MG MG . D MG 802 1_555 S O2B ATP . D ATP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc26 E NE2 HIS 262 E HIS 540 1_555 U ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc27 E NE2 HIS 266 E HIS 544 1_555 U ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc28 E OD1 ASP 340 E ASP 618 1_555 U ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc29 E OD2 ASP 340 E ASP 618 1_555 U ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc30 F NE2 HIS 262 F HIS 540 1_555 V ZN ZN . F ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc31 F NE2 HIS 266 F HIS 544 1_555 V ZN ZN . F ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6AZ0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 801 800 ATP ATP . I 4 ZN A 1 802 999 ZN ZN . J 5 MG A 1 803 899 MG MG . K 3 ATP B 1 801 802 ATP ATP . L 4 ZN B 1 802 999 ZN ZN . M 5 MG B 1 803 899 MG MG . N 3 ATP C 1 801 801 ATP ATP . O 4 ZN C 1 802 999 ZN ZN . P 5 MG C 1 803 899 MG MG . Q 4 ZN D 1 801 999 ZN ZN . R 5 MG D 1 802 899 MG MG . S 3 ATP D 1 803 799 ATP ATP . T 6 ADP E 1 801 799 ADP ADP . U 4 ZN E 1 802 999 ZN ZN . V 4 ZN F 1 801 999 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . S 3 104.214 78.713 87.5 1 52.75 ? PG ATP 803 D 1 HETATM 2 O O1G ATP . . . S 3 104.003 78.187 86.111 1 52.75 ? O1G ATP 803 D 1 HETATM 3 O O2G ATP . . . S 3 104.147 77.673 88.582 1 52.75 ? O2G ATP 803 D 1 HETATM 4 O O3G ATP . . . S 3 103.489 79.99 87.814 1 52.75 ? O3G ATP 803 D 1 HETATM 5 P PB ATP . . . S 3 106.316 79.828 88.837 1 52.75 ? PB ATP 803 D 1 HETATM 6 O O1B ATP . . . S 3 106.558 81.284 88.595 1 52.75 ? O1B ATP 803 D 1 HETATM 7 O O2B ATP . . . S 3 105.508 79.374 90.023 1 52.75 ? O2B ATP 803 D 1 HETATM 8 O O3B ATP . . . S 3 105.744 79.162 87.505 1 52.75 ? O3B ATP 803 D 1 HETATM 9 P PA ATP . . . S 3 108.505 79.194 90.333 1 52.75 ? PA ATP 803 D 1 HETATM 10 O O1A ATP . . . S 3 108.963 80.591 90.618 1 52.75 ? O1A ATP 803 D 1 HETATM 11 O O2A ATP . . . S 3 107.697 78.43 91.342 1 52.75 ? O2A ATP 803 D 1 HETATM 12 O O3A ATP . . . S 3 107.759 79.171 88.928 1 52.75 ? O3A ATP 803 D 1 HETATM 13 O O5' ATP . . . S 3 109.77 78.297 89.996 1 52.75 ? O5' ATP 803 D 1 HETATM 14 C C5' ATP . . . S 3 110.426 77.737 91.104 1 52.75 ? C5' ATP 803 D 1 HETATM 15 C C4' ATP . . . S 3 111.754 77.117 90.684 1 52.75 ? C4' ATP 803 D 1 HETATM 16 O O4' ATP . . . S 3 112.478 77.97 89.8 1 52.75 ? O4' ATP 803 D 1 HETATM 17 C C3' ATP . . . S 3 112.643 76.833 91.868 1 52.75 ? C3' ATP 803 D 1 HETATM 18 O O3' ATP . . . S 3 112.79 75.435 92.061 1 52.75 ? O3' ATP 803 D 1 HETATM 19 C C2' ATP . . . S 3 113.967 77.464 91.553 1 52.75 ? C2' ATP 803 D 1 HETATM 20 O O2' ATP . . . S 3 114.989 76.479 91.627 1 52.75 ? O2' ATP 803 D 1 HETATM 21 C C1' ATP . . . S 3 113.853 78.065 90.161 1 52.75 ? C1' ATP 803 D 1 HETATM 22 N N9 ATP . . . S 3 114.225 79.492 90.114 1 52.75 ? N9 ATP 803 D 1 HETATM 23 C C8 ATP . . . S 3 113.534 80.417 89.438 1 52.75 ? C8 ATP 803 D 1 HETATM 24 N N7 ATP . . . S 3 114.093 81.635 89.564 1 52.75 ? N7 ATP 803 D 1 HETATM 25 C C5 ATP . . . S 3 115.166 81.489 90.336 1 52.75 ? C5 ATP 803 D 1 HETATM 26 C C6 ATP . . . S 3 116.191 82.386 90.846 1 52.75 ? C6 ATP 803 D 1 HETATM 27 N N6 ATP . . . S 3 116.096 83.681 90.516 1 52.75 ? N6 ATP 803 D 1 HETATM 28 N N1 ATP . . . S 3 117.159 81.874 91.623 1 52.75 ? N1 ATP 803 D 1 HETATM 29 C C2 ATP . . . S 3 117.191 80.566 91.917 1 52.75 ? C2 ATP 803 D 1 HETATM 30 N N3 ATP . . . S 3 116.278 79.692 91.477 1 52.75 ? N3 ATP 803 D 1 HETATM 31 C C4 ATP . . . S 3 115.268 80.085 90.683 1 52.75 ? C4 ATP 803 D 1 HETATM 32 H "H5'1" ATP . . . S 3 109.775 76.994 91.555 1 52.75 ? "H5'1" ATP 803 D 1 HETATM 33 H "H5'2" ATP . . . S 3 110.558 78.525 91.833 1 52.75 ? "H5'2" ATP 803 D 1 HETATM 34 H H4' ATP . . . S 3 111.558 76.161 90.193 1 52.75 ? H4' ATP 803 D 1 HETATM 35 H H3' ATP . . . S 3 112.239 77.288 92.773 1 52.75 ? H3' ATP 803 D 1 HETATM 36 H HO3' ATP . . . S 3 113.089 75.291 92.967 1 52.75 ? HO3' ATP 803 D 1 HETATM 37 H H2' ATP . . . S 3 114.132 78.229 92.308 1 52.75 ? H2' ATP 803 D 1 HETATM 38 H HO2' ATP . . . S 3 115.118 76.248 92.555 1 52.75 ? HO2' ATP 803 D 1 HETATM 39 H H1' ATP . . . S 3 114.46 77.498 89.456 1 52.75 ? H1' ATP 803 D 1 HETATM 40 H H8 ATP . . . S 3 112.645 80.224 88.865 1 52.75 ? H8 ATP 803 D 1 HETATM 41 H HN61 ATP . . . S 3 115.334 83.977 89.929 1 52.75 ? HN61 ATP 803 D 1 HETATM 42 H HN62 ATP . . . S 3 116.769 84.342 90.846 1 52.75 ? HN62 ATP 803 D 1 HETATM 43 H H2 ATP . . . S 3 117.987 80.197 92.545 1 52.75 ? H2 ATP 803 D 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 117 _model_server_stats.query_time_ms 1269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #