data_6AZU
#
_model_server_result.job_id            ZbGhSUbrPNwdzkQav5t0Qg 
_model_server_result.datetime_utc      '2024-12-26 21:14:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6azu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    6AZU 
#
_exptl.entry_id    6AZU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6AZU 
_cell.length_a            119.109 
_cell.length_b            177.513 
_cell.length_c            101.253 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AZU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1 
B,G,H 2 1 
C,I,J 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 307 A CYS 308 1_555 B SG CYS 307 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 A O ALA 263 A ALA 264 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc2 A NE2 HIS 345 A HIS 346 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc3 B O ALA 263 B ALA 264 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc4 B NE2 HIS 345 B HIS 346 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc5 C O ALA 263 C ALA 264 1_555 I FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc6 C NE2 HIS 345 C HIS 346 1_555 I FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc7 D O ALA 263 D ALA 264 1_555 K FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc8 D NE2 HIS 345 D HIS 346 1_555 K FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6AZU 
_atom_sites.fract_transf_matrix[1][1]    0.008396 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009876 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 501 500 HEM HEM . 
F 3 SO4 A 1 502 2 SO4 SO4 . 
G 2 HEM B 1 501 500 HEM HEM . 
H 3 SO4 B 1 502 3 SO4 SO4 . 
I 2 HEM C 1 501 500 HEM HEM . 
J 3 SO4 C 1 502 1 SO4 SO4 . 
K 2 HEM D 1 501 500 HEM HEM . 
L 3 SO4 D 1 502 4 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 2 51.053 207.134 10.412 1 56.26 ? CHA HEM 501 D 1 
HETATM 2 C CHB HEM . . . K 2 49.674 202.526 10.893 1 38.07 ? CHB HEM 501 D 1 
HETATM 3 C CHC HEM . . . K 2 46.105 203.143 7.695 1 54.49 ? CHC HEM 501 D 1 
HETATM 4 C CHD HEM . . . K 2 47.792 207.625 6.79 1 51.24 ? CHD HEM 501 D 1 
HETATM 5 C C1A HEM . . . K 2 50.956 205.839 10.862 1 49.51 ? C1A HEM 501 D 1 
HETATM 6 C C2A HEM . . . K 2 51.739 205.269 11.946 1 41.43 ? C2A HEM 501 D 1 
HETATM 7 C C3A HEM . . . K 2 51.339 203.999 12.083 1 45.2 ? C3A HEM 501 D 1 
HETATM 8 C C4A HEM . . . K 2 50.316 203.733 11.076 1 44.06 ? C4A HEM 501 D 1 
HETATM 9 C CMA HEM . . . K 2 51.85 202.94 13.096 1 13.16 ? CMA HEM 501 D 1 
HETATM 10 C CAA HEM . . . K 2 52.788 206.059 12.774 1 73.22 ? CAA HEM 501 D 1 
HETATM 11 C CBA HEM . . . K 2 54.109 205.337 13.048 1 76.3 ? CBA HEM 501 D 1 
HETATM 12 C CGA HEM . . . K 2 54.781 205.02 11.746 1 83.7 ? CGA HEM 501 D 1 
HETATM 13 O O1A HEM . . . K 2 54.761 205.911 10.857 1 83.19 ? O1A HEM 501 D 1 
HETATM 14 O O2A HEM . . . K 2 55.338 203.897 11.61 1 86.23 ? O2A HEM 501 D 1 
HETATM 15 C C1B HEM . . . K 2 48.574 202.3 10.105 1 45.84 ? C1B HEM 501 D 1 
HETATM 16 C C2B HEM . . . K 2 47.824 201.068 10.058 1 41.13 ? C2B HEM 501 D 1 
HETATM 17 C C3B HEM . . . K 2 46.813 201.227 9.181 1 45.21 ? C3B HEM 501 D 1 
HETATM 18 C C4B HEM . . . K 2 46.926 202.568 8.633 1 53.73 ? C4B HEM 501 D 1 
HETATM 19 C CMB HEM . . . K 2 48.179 199.847 10.94 1 36.84 ? CMB HEM 501 D 1 
HETATM 20 C CAB HEM . . . K 2 45.718 200.218 8.734 1 38.91 ? CAB HEM 501 D 1 
HETATM 21 C CBB HEM . . . K 2 45.793 198.883 8.872 1 32.9 ? CBB HEM 501 D 1 
HETATM 22 C C1C HEM . . . K 2 46.339 204.369 7.11 1 59.85 ? C1C HEM 501 D 1 
HETATM 23 C C2C HEM . . . K 2 45.753 204.834 5.855 1 58.57 ? C2C HEM 501 D 1 
HETATM 24 C C3C HEM . . . K 2 46.217 206.073 5.63 1 51.13 ? C3C HEM 501 D 1 
HETATM 25 C C4C HEM . . . K 2 47.115 206.421 6.71 1 55.29 ? C4C HEM 501 D 1 
HETATM 26 C CMC HEM . . . K 2 44.763 204.013 4.99 1 49.4 ? CMC HEM 501 D 1 
HETATM 27 C CAC HEM . . . K 2 45.949 207.036 4.462 1 49.36 ? CAC HEM 501 D 1 
HETATM 28 C CBC HEM . . . K 2 45.359 206.683 3.322 1 51.52 ? CBC HEM 501 D 1 
HETATM 29 C C1D HEM . . . K 2 48.795 207.934 7.692 1 50.61 ? C1D HEM 501 D 1 
HETATM 30 C C2D HEM . . . K 2 49.451 209.219 7.811 1 41.23 ? C2D HEM 501 D 1 
HETATM 31 C C3D HEM . . . K 2 50.468 209.056 8.939 1 36.04 ? C3D HEM 501 D 1 
HETATM 32 C C4D HEM . . . K 2 50.318 207.697 9.391 1 48.75 ? C4D HEM 501 D 1 
HETATM 33 C CMD HEM . . . K 2 49.203 210.484 6.96 1 50.76 ? CMD HEM 501 D 1 
HETATM 34 C CAD HEM . . . K 2 51.438 210.118 9.503 1 34.18 ? CAD HEM 501 D 1 
HETATM 35 C CBD HEM . . . K 2 50.744 210.812 10.684 1 32.86 ? CBD HEM 501 D 1 
HETATM 36 C CGD HEM . . . K 2 49.903 211.979 10.227 1 35.73 ? CGD HEM 501 D 1 
HETATM 37 O O1D HEM . . . K 2 48.824 212.239 10.826 1 28.11 ? O1D HEM 501 D 1 
HETATM 38 O O2D HEM . . . K 2 50.301 212.655 9.241 1 41.56 ? O2D HEM 501 D 1 
HETATM 39 N NA HEM . . . K 2 50.101 204.885 10.338 1 43.83 ? NA HEM 501 D 1 
HETATM 40 N NB HEM . . . K 2 48.004 203.204 9.223 1 58.23 ? NB HEM 501 D 1 
HETATM 41 N NC HEM . . . K 2 47.173 205.359 7.612 1 54.99 ? NC HEM 501 D 1 
HETATM 42 N ND HEM . . . K 2 49.333 207.058 8.641 1 50.29 ? ND HEM 501 D 1 
HETATM 43 FE FE HEM . . . K 2 48.692 205.124 8.865 1 79.34 ? FE HEM 501 D 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#