data_6B08
#
_model_server_result.job_id            poaqf4vDejqwZLTQqGFFOg 
_model_server_result.datetime_utc      '2024-10-17 17:29:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b08 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    6B08 
#
_exptl.entry_id    6B08 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.45 
_cell.angle_gamma         90 
_cell.entry_id            6B08 
_cell.length_a            139.351 
_cell.length_b            70.264 
_cell.length_c            83.742 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B08 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 C CYS 22 1_555 A SG CYS 96 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 147 C CYS 140 1_555 A SG CYS 203 C CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 B SG CYS 22 B CYS 23 1_555 B SG CYS 87 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 B SG CYS 135 B CYS 135 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 C SG CYS 11 A CYS 9 1_555 C SG CYS 25 A CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 C SG CYS 27 A CYS 25 1_555 C SG CYS 39 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 C SG CYS 46 A CYS 44 1_555 C SG CYS 61 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf8 C SG CYS 55 A CYS 53 1_555 C SG CYS 73 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 C SG CYS 75 A CYS 73 1_555 C SG CYS 86 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf10 C SG CYS 91 A CYS 89 1_555 C SG CYS 101 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 C SG CYS 96 A CYS 94 1_555 C SG CYS 114 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf12 C SG CYS 116 A CYS 114 1_555 C SG CYS 130 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 C SG CYS 138 A CYS 136 1_555 C SG CYS 149 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf14 C SG CYS 142 A CYS 140 1_555 C SG CYS 158 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf15 C SG CYS 160 A CYS 158 1_555 C SG CYS 173 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6B08 
_atom_sites.fract_transf_matrix[1][1]    0.007176 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000057 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014232 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011942 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL C 1 301 301 GOL GOL . 
E 4 GOL B 1 301 301 GOL GOL . 
F 4 GOL B 1 302 302 GOL GOL . 
G 4 GOL B 1 303 303 GOL GOL . 
H 5 HOH C 1 401 403 HOH HOH . 
H 5 HOH C 2 402 401 HOH HOH . 
H 5 HOH C 3 403 402 HOH HOH . 
H 5 HOH C 4 404 405 HOH HOH . 
H 5 HOH C 5 405 404 HOH HOH . 
H 5 HOH C 6 406 407 HOH HOH . 
H 5 HOH C 7 407 413 HOH HOH . 
H 5 HOH C 8 408 406 HOH HOH . 
H 5 HOH C 9 409 408 HOH HOH . 
H 5 HOH C 10 410 410 HOH HOH . 
H 5 HOH C 11 411 409 HOH HOH . 
H 5 HOH C 12 412 412 HOH HOH . 
H 5 HOH C 13 413 407 HOH HOH . 
H 5 HOH C 14 414 414 HOH HOH . 
H 5 HOH C 15 415 411 HOH HOH . 
H 5 HOH C 16 416 420 HOH HOH . 
H 5 HOH C 17 417 417 HOH HOH . 
H 5 HOH C 18 418 416 HOH HOH . 
H 5 HOH C 19 419 415 HOH HOH . 
H 5 HOH C 20 420 418 HOH HOH . 
H 5 HOH C 21 421 419 HOH HOH . 
H 5 HOH C 22 422 422 HOH HOH . 
H 5 HOH C 23 423 429 HOH HOH . 
H 5 HOH C 24 424 423 HOH HOH . 
H 5 HOH C 25 425 426 HOH HOH . 
H 5 HOH C 26 426 425 HOH HOH . 
H 5 HOH C 27 427 431 HOH HOH . 
H 5 HOH C 28 428 421 HOH HOH . 
H 5 HOH C 29 429 433 HOH HOH . 
H 5 HOH C 30 430 430 HOH HOH . 
H 5 HOH C 31 431 424 HOH HOH . 
H 5 HOH C 32 432 414 HOH HOH . 
H 5 HOH C 33 433 427 HOH HOH . 
H 5 HOH C 34 434 434 HOH HOH . 
H 5 HOH C 35 435 432 HOH HOH . 
H 5 HOH C 36 436 428 HOH HOH . 
H 5 HOH C 37 437 437 HOH HOH . 
H 5 HOH C 38 438 435 HOH HOH . 
H 5 HOH C 39 439 446 HOH HOH . 
H 5 HOH C 40 440 438 HOH HOH . 
H 5 HOH C 41 441 443 HOH HOH . 
H 5 HOH C 42 442 445 HOH HOH . 
H 5 HOH C 43 443 436 HOH HOH . 
H 5 HOH C 44 444 447 HOH HOH . 
H 5 HOH C 45 445 439 HOH HOH . 
H 5 HOH C 46 446 441 HOH HOH . 
H 5 HOH C 47 447 440 HOH HOH . 
H 5 HOH C 48 448 448 HOH HOH . 
H 5 HOH C 49 449 459 HOH HOH . 
H 5 HOH C 50 450 452 HOH HOH . 
H 5 HOH C 51 451 456 HOH HOH . 
H 5 HOH C 52 452 444 HOH HOH . 
H 5 HOH C 53 453 442 HOH HOH . 
H 5 HOH C 54 454 454 HOH HOH . 
H 5 HOH C 55 455 451 HOH HOH . 
H 5 HOH C 56 456 458 HOH HOH . 
H 5 HOH C 57 457 472 HOH HOH . 
H 5 HOH C 58 458 455 HOH HOH . 
H 5 HOH C 59 459 460 HOH HOH . 
H 5 HOH C 60 460 453 HOH HOH . 
H 5 HOH C 61 461 450 HOH HOH . 
H 5 HOH C 62 462 449 HOH HOH . 
H 5 HOH C 63 463 463 HOH HOH . 
H 5 HOH C 64 464 464 HOH HOH . 
H 5 HOH C 65 465 457 HOH HOH . 
H 5 HOH C 66 466 469 HOH HOH . 
H 5 HOH C 67 467 462 HOH HOH . 
H 5 HOH C 68 468 461 HOH HOH . 
H 5 HOH C 69 469 466 HOH HOH . 
H 5 HOH C 70 470 465 HOH HOH . 
H 5 HOH C 71 471 470 HOH HOH . 
H 5 HOH C 72 472 467 HOH HOH . 
H 5 HOH C 73 473 474 HOH HOH . 
H 5 HOH C 74 474 471 HOH HOH . 
H 5 HOH C 75 475 468 HOH HOH . 
H 5 HOH C 76 476 473 HOH HOH . 
H 5 HOH C 77 477 475 HOH HOH . 
H 5 HOH C 78 478 477 HOH HOH . 
H 5 HOH C 79 479 478 HOH HOH . 
H 5 HOH C 80 480 479 HOH HOH . 
H 5 HOH C 81 481 476 HOH HOH . 
H 5 HOH C 82 482 480 HOH HOH . 
H 5 HOH C 83 483 481 HOH HOH . 
H 5 HOH C 84 484 483 HOH HOH . 
H 5 HOH C 85 485 482 HOH HOH . 
H 5 HOH C 86 486 487 HOH HOH . 
H 5 HOH C 87 487 486 HOH HOH . 
H 5 HOH C 88 488 485 HOH HOH . 
H 5 HOH C 89 489 489 HOH HOH . 
H 5 HOH C 90 490 484 HOH HOH . 
H 5 HOH C 91 491 488 HOH HOH . 
H 5 HOH C 92 492 490 HOH HOH . 
H 5 HOH C 93 493 491 HOH HOH . 
H 5 HOH C 94 494 492 HOH HOH . 
H 5 HOH C 95 495 493 HOH HOH . 
H 5 HOH C 96 496 494 HOH HOH . 
H 5 HOH C 97 497 495 HOH HOH . 
H 5 HOH C 98 498 496 HOH HOH . 
H 5 HOH C 99 499 497 HOH HOH . 
H 5 HOH C 100 500 498 HOH HOH . 
H 5 HOH C 101 501 499 HOH HOH . 
H 5 HOH C 102 502 500 HOH HOH . 
I 5 HOH B 1 401 402 HOH HOH . 
I 5 HOH B 2 402 403 HOH HOH . 
I 5 HOH B 3 403 401 HOH HOH . 
I 5 HOH B 4 404 405 HOH HOH . 
I 5 HOH B 5 405 404 HOH HOH . 
I 5 HOH B 6 406 408 HOH HOH . 
I 5 HOH B 7 407 406 HOH HOH . 
I 5 HOH B 8 408 410 HOH HOH . 
I 5 HOH B 9 409 409 HOH HOH . 
I 5 HOH B 10 410 411 HOH HOH . 
I 5 HOH B 11 411 413 HOH HOH . 
I 5 HOH B 12 412 412 HOH HOH . 
I 5 HOH B 13 413 417 HOH HOH . 
I 5 HOH B 14 414 415 HOH HOH . 
I 5 HOH B 15 415 420 HOH HOH . 
I 5 HOH B 16 416 416 HOH HOH . 
I 5 HOH B 17 417 418 HOH HOH . 
I 5 HOH B 18 418 421 HOH HOH . 
I 5 HOH B 19 419 423 HOH HOH . 
I 5 HOH B 20 420 419 HOH HOH . 
I 5 HOH B 21 421 422 HOH HOH . 
I 5 HOH B 22 422 427 HOH HOH . 
I 5 HOH B 23 423 424 HOH HOH . 
I 5 HOH B 24 424 425 HOH HOH . 
I 5 HOH B 25 425 428 HOH HOH . 
I 5 HOH B 26 426 426 HOH HOH . 
I 5 HOH B 27 427 430 HOH HOH . 
I 5 HOH B 28 428 429 HOH HOH . 
I 5 HOH B 29 429 434 HOH HOH . 
I 5 HOH B 30 430 431 HOH HOH . 
I 5 HOH B 31 431 441 HOH HOH . 
I 5 HOH B 32 432 436 HOH HOH . 
I 5 HOH B 33 433 433 HOH HOH . 
I 5 HOH B 34 434 432 HOH HOH . 
I 5 HOH B 35 435 435 HOH HOH . 
I 5 HOH B 36 436 439 HOH HOH . 
I 5 HOH B 37 437 437 HOH HOH . 
I 5 HOH B 38 438 440 HOH HOH . 
I 5 HOH B 39 439 438 HOH HOH . 
I 5 HOH B 40 440 442 HOH HOH . 
I 5 HOH B 41 441 443 HOH HOH . 
I 5 HOH B 42 442 445 HOH HOH . 
I 5 HOH B 43 443 444 HOH HOH . 
I 5 HOH B 44 444 446 HOH HOH . 
I 5 HOH B 45 445 448 HOH HOH . 
I 5 HOH B 46 446 449 HOH HOH . 
I 5 HOH B 47 447 447 HOH HOH . 
I 5 HOH B 48 448 450 HOH HOH . 
I 5 HOH B 49 449 451 HOH HOH . 
I 5 HOH B 50 450 453 HOH HOH . 
I 5 HOH B 51 451 452 HOH HOH . 
I 5 HOH B 52 452 454 HOH HOH . 
J 5 HOH A 1 201 202 HOH HOH . 
J 5 HOH A 2 202 201 HOH HOH . 
J 5 HOH A 3 203 204 HOH HOH . 
J 5 HOH A 4 204 203 HOH HOH . 
J 5 HOH A 5 205 205 HOH HOH . 
J 5 HOH A 6 206 206 HOH HOH . 
J 5 HOH A 7 207 208 HOH HOH . 
J 5 HOH A 8 208 207 HOH HOH . 
J 5 HOH A 9 209 209 HOH HOH . 
J 5 HOH A 10 210 210 HOH HOH . 
J 5 HOH A 11 211 211 HOH HOH . 
J 5 HOH A 12 212 212 HOH HOH . 
J 5 HOH A 13 213 213 HOH HOH . 
J 5 HOH A 14 214 214 HOH HOH . 
J 5 HOH A 15 215 215 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 -5.752 6.755 10.915 1 81.68 ? C1 GOL 302 B 1 
HETATM 2 O O1 GOL . . . F 4 -5.595 5.391 11.2 1 78.06 ? O1 GOL 302 B 1 
HETATM 3 C C2 GOL . . . F 4 -6.105 6.894 9.402 1 84.91 ? C2 GOL 302 B 1 
HETATM 4 O O2 GOL . . . F 4 -7.301 7.567 9.215 1 87.92 ? O2 GOL 302 B 1 
HETATM 5 C C3 GOL . . . F 4 -4.911 7.657 8.767 1 83.74 ? C3 GOL 302 B 1 
HETATM 6 O O3 GOL . . . F 4 -5.056 7.58 7.376 1 82.32 ? O3 GOL 302 B 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#