data_6B0C # _model_server_result.job_id p5KZvdBwyTn0oppvfO8nuw _model_server_result.datetime_utc '2025-07-06 20:38:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6B0C # _exptl.entry_id 6B0C _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 175-meric 175 'representative helical assembly' 1 ? pentameric 5 'helical asymmetric unit' 2 ? pentameric 5 'helical asymmetric unit, std helical frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 (1-35) A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 27 A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'helical symmetry operation' ? ? 0.923966 -0.382474 0 0.382474 0.923966 0 0 0 1 151.52938 -101.27356 -94.69 2 'helical symmetry operation' ? ? 0.999729 0.023298 0 -0.023298 0.999729 0 0 0 1 -7.60992 7.78933 -83.55 3 'helical symmetry operation' ? ? 0.905146 0.4251 0 -0.4251 0.905146 0 0 0 1 -109.14117 171.8364 -72.41 4 'helical symmetry operation' ? ? 0.656336 0.754469 0 -0.754469 0.656336 0 0 0 1 -135.76437 362.91554 -61.27 5 'helical symmetry operation' ? ? 0.295691 0.955284 0 -0.955284 0.295691 0 0 0 1 -82.94319 548.46865 -50.13 6 'helical symmetry operation' ? ? -0.115336 0.993327 0 -0.993327 -0.115336 0 0 0 1 40.32214 696.8792 -38.99 7 'helical symmetry operation' ? ? -0.506711 0.862116 0 -0.862116 -0.506711 0 0 0 1 213.02835 782.85942 -27.85 8 'helical symmetry operation' ? ? -0.811747 0.584009 0 -0.584009 -0.811747 0 0 0 1 405.74792 791.75907 -16.71 9 'helical symmetry operation' ? ? -0.978469 0.206392 0 -0.206392 -0.978469 0 0 0 1 585.64321 722.06174 -5.57 10 'helical symmetry operation' ? ? -0.978469 -0.206392 0 0.206392 -0.978469 0 0 0 1 722.06174 585.64321 5.57 11 'helical symmetry operation' ? ? -0.811747 -0.584009 0 0.584009 -0.811747 0 0 0 1 791.75907 405.74792 16.71 12 'helical symmetry operation' ? ? -0.506711 -0.862116 0 0.862116 -0.506711 0 0 0 1 782.85942 213.02835 27.85 13 'helical symmetry operation' ? ? -0.115336 -0.993327 0 0.993327 -0.115336 0 0 0 1 696.8792 40.32214 38.99 14 'helical symmetry operation' ? ? 0.295691 -0.955284 0 0.955284 0.295691 0 0 0 1 548.46865 -82.94319 50.13 15 'helical symmetry operation' ? ? 0.656336 -0.754469 0 0.754469 0.656336 0 0 0 1 362.91554 -135.76437 61.27 16 'helical symmetry operation' ? ? 0.905146 -0.4251 0 0.4251 0.905146 0 0 0 1 171.8364 -109.14117 72.41 17 'helical symmetry operation' ? ? 0.999729 -0.023298 0 0.023298 0.999729 0 0 0 1 7.78933 -7.60992 83.55 18 'helical symmetry operation' ? ? 0.923966 0.382474 0 -0.382474 0.923966 0 0 0 1 -101.27356 151.52938 94.69 19 'helical symmetry operation' ? ? -0.983012 0.18354 0 -0.18354 -0.983012 0 0 0 1 594.69694 716.01075 -89.12 20 'helical symmetry operation' ? ? -0.973395 -0.229132 0 0.229132 -0.973395 0 0 0 1 727.90016 576.45095 -77.98 21 'helical symmetry operation' ? ? -0.797921 -0.602762 0 0.602762 -0.797921 0 0 0 1 793.38737 394.98068 -66.84 22 'helical symmetry operation' ? ? -0.486488 -0.873687 0 0.873687 -0.486488 0 0 0 1 780.00014 202.52078 -55.7 23 'helical symmetry operation' ? ? -0.092162 -0.995744 0 0.995744 -0.092162 0 0 0 1 690.01955 31.86461 -44.56 24 'helical symmetry operation' ? ? 0.317867 -0.948135 0 0.948135 0.317867 0 0 0 1 538.77744 -87.90958 -33.42 25 'helical symmetry operation' ? ? 0.673735 -0.738973 0 0.738973 0.673735 0 0 0 1 352.04407 -136.39341 -22.28 26 'helical symmetry operation' ? ? 0.914805 -0.403897 0 0.403897 0.914805 0 0 0 1 161.63706 -105.32566 -11.14 27 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 28 'helical symmetry operation' ? ? 0.914805 0.403897 0 -0.403897 0.914805 0 0 0 1 -105.32566 161.63706 11.14 29 'helical symmetry operation' ? ? 0.673735 0.738973 0 -0.738973 0.673735 0 0 0 1 -136.39341 352.04407 22.28 30 'helical symmetry operation' ? ? 0.317867 0.948135 0 -0.948135 0.317867 0 0 0 1 -87.90958 538.77744 33.42 31 'helical symmetry operation' ? ? -0.092162 0.995744 0 -0.995744 -0.092162 0 0 0 1 31.86461 690.01955 44.56 32 'helical symmetry operation' ? ? -0.486488 0.873687 0 -0.873687 -0.486488 0 0 0 1 202.52078 780.00014 55.7 33 'helical symmetry operation' ? ? -0.797921 0.602762 0 -0.602762 -0.797921 0 0 0 1 394.98068 793.38737 66.84 34 'helical symmetry operation' ? ? -0.973395 0.229132 0 -0.229132 -0.973395 0 0 0 1 576.45095 727.90016 77.98 35 'helical symmetry operation' ? ? -0.983012 -0.18354 0 0.18354 -0.983012 0 0 0 1 716.01075 594.69694 89.12 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 71 A GLU 71 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc2 F O3G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc3 F O3B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc4 F O1B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc5 C OE1 GLU 71 C GLU 71 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 I O1G GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 E OG SER 247 K SER 488 1_555 M MG MG . K MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc8 M MG MG . K MG 701 1_555 N O1G ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc9 M MG MG . K MG 701 1_555 N O3G ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 M MG MG . K MG 701 1_555 N O2B ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 224 n n PG O2G GTP sing 225 n n PG O3G GTP sing 226 n n PG O3B GTP sing 227 n n O2G HOG2 GTP sing 228 n n O3G HOG3 GTP sing 229 n n O3B PB GTP sing 230 n n PB O1B GTP doub 231 n n PB O2B GTP sing 232 n n PB O3A GTP sing 233 n n O2B HOB2 GTP sing 234 n n O3A PA GTP sing 235 n n PA O1A GTP doub 236 n n PA O2A GTP sing 237 n n PA O5' GTP sing 238 n n O2A HOA2 GTP sing 239 n n O5' C5' GTP sing 240 n n C5' C4' GTP sing 241 n n C5' H5' GTP sing 242 n n C5' "H5''" GTP sing 243 n n C4' O4' GTP sing 244 n n C4' C3' GTP sing 245 n n C4' H4' GTP sing 246 n n O4' C1' GTP sing 247 n n C3' O3' GTP sing 248 n n C3' C2' GTP sing 249 n n C3' H3' GTP sing 250 n n O3' HO3' GTP sing 251 n n C2' O2' GTP sing 252 n n C2' C1' GTP sing 253 n n C2' H2' GTP sing 254 n n O2' HO2' GTP sing 255 n n C1' N9 GTP sing 256 n n C1' H1' GTP sing 257 n n N9 C8 GTP sing 258 n y N9 C4 GTP sing 259 n y C8 N7 GTP doub 260 n y C8 H8 GTP sing 261 n n N7 C5 GTP sing 262 n y C5 C6 GTP sing 263 n n C5 C4 GTP doub 264 n y C6 O6 GTP doub 265 n n C6 N1 GTP sing 266 n n N1 C2 GTP sing 267 n n N1 HN1 GTP sing 268 n n C2 N2 GTP sing 269 n n C2 N3 GTP doub 270 n n N2 HN21 GTP sing 271 n n N2 HN22 GTP sing 272 n n N3 C4 GTP sing 273 n n # _atom_sites.entry_id 6B0C _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 501 501 GTP GTP . G 5 MG A 1 502 502 MG MG . H 6 GDP B 1 501 501 GDP GDP . I 4 GTP C 1 501 501 GTP GTP . J 5 MG C 1 502 502 MG MG . K 6 GDP D 1 501 501 GDP GDP . L 7 TA1 D 1 502 502 TA1 TA1 . M 5 MG K 1 701 806 MG MG . N 8 ANP K 1 702 807 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . I 4 279.097 214.476 304.111 1 60.49 ? PG GTP 501 C 1 HETATM 2 O O1G GTP . . . I 4 279.796 215.775 304.401 1 60.49 ? O1G GTP 501 C 1 HETATM 3 O O2G GTP . . . I 4 277.726 214.457 304.72 1 60.49 ? O2G GTP 501 C 1 HETATM 4 O O3G GTP . . . I 4 279.898 213.343 304.678 1 60.49 ? O3G GTP 501 C 1 HETATM 5 O O3B GTP . . . I 4 278.985 214.288 302.533 1 60.49 ? O3B GTP 501 C 1 HETATM 6 P PB GTP . . . I 4 280.163 214.848 301.62 1 60.49 ? PB GTP 501 C 1 HETATM 7 O O1B GTP . . . I 4 280.099 214.34 300.214 1 60.49 ? O1B GTP 501 C 1 HETATM 8 O O2B GTP . . . I 4 280.07 216.338 301.625 1 60.49 ? O2B GTP 501 C 1 HETATM 9 O O3A GTP . . . I 4 281.514 214.4 302.34 1 60.49 ? O3A GTP 501 C 1 HETATM 10 P PA GTP . . . I 4 282.897 214.516 301.549 1 60.49 ? PA GTP 501 C 1 HETATM 11 O O1A GTP . . . I 4 282.804 215.511 300.437 1 60.49 ? O1A GTP 501 C 1 HETATM 12 O O2A GTP . . . I 4 283.97 214.832 302.545 1 60.49 ? O2A GTP 501 C 1 HETATM 13 O O5' GTP . . . I 4 283.199 213.083 300.926 1 60.49 ? O5' GTP 501 C 1 HETATM 14 C C5' GTP . . . I 4 284.265 212.33 301.451 1 60.49 ? C5' GTP 501 C 1 HETATM 15 C C4' GTP . . . I 4 285.372 212.153 300.423 1 60.49 ? C4' GTP 501 C 1 HETATM 16 O O4' GTP . . . I 4 285.433 213.254 299.559 1 60.49 ? O4' GTP 501 C 1 HETATM 17 C C3' GTP . . . I 4 286.717 212.107 301.1 1 60.49 ? C3' GTP 501 C 1 HETATM 18 O O3' GTP . . . I 4 287.129 210.778 301.256 1 60.49 ? O3' GTP 501 C 1 HETATM 19 C C2' GTP . . . I 4 287.66 212.825 300.174 1 60.49 ? C2' GTP 501 C 1 HETATM 20 O O2' GTP . . . I 4 288.476 211.903 299.508 1 60.49 ? O2' GTP 501 C 1 HETATM 21 C C1' GTP . . . I 4 286.763 213.491 299.164 1 60.49 ? C1' GTP 501 C 1 HETATM 22 N N9 GTP . . . I 4 286.993 214.936 299.144 1 60.49 ? N9 GTP 501 C 1 HETATM 23 C C8 GTP . . . I 4 286.547 215.832 300.059 1 60.49 ? C8 GTP 501 C 1 HETATM 24 N N7 GTP . . . I 4 286.944 217.051 299.659 1 60.49 ? N7 GTP 501 C 1 HETATM 25 C C5 GTP . . . I 4 287.62 216.947 298.504 1 60.49 ? C5 GTP 501 C 1 HETATM 26 C C6 GTP . . . I 4 288.233 217.88 297.69 1 60.49 ? C6 GTP 501 C 1 HETATM 27 O O6 GTP . . . I 4 288.215 219.068 297.984 1 60.49 ? O6 GTP 501 C 1 HETATM 28 N N1 GTP . . . I 4 288.862 217.478 296.544 1 60.49 ? N1 GTP 501 C 1 HETATM 29 C C2 GTP . . . I 4 288.885 216.146 296.224 1 60.49 ? C2 GTP 501 C 1 HETATM 30 N N2 GTP . . . I 4 289.502 215.738 295.122 1 60.49 ? N2 GTP 501 C 1 HETATM 31 N N3 GTP . . . I 4 288.28 215.232 297.05 1 60.49 ? N3 GTP 501 C 1 HETATM 32 C C4 GTP . . . I 4 287.651 215.623 298.171 1 60.49 ? C4 GTP 501 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #