data_6B0C # _model_server_result.job_id jDIeaq2TIiAhSA-Z4h2uJg _model_server_result.datetime_utc '2025-07-05 11:16:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 6B0C # _exptl.entry_id 6B0C _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 175-meric 175 'representative helical assembly' 1 ? pentameric 5 'helical asymmetric unit' 2 ? pentameric 5 'helical asymmetric unit, std helical frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 (1-35) A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 27 A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'helical symmetry operation' ? ? 0.923966 -0.382474 0 0.382474 0.923966 0 0 0 1 151.52938 -101.27356 -94.69 2 'helical symmetry operation' ? ? 0.999729 0.023298 0 -0.023298 0.999729 0 0 0 1 -7.60992 7.78933 -83.55 3 'helical symmetry operation' ? ? 0.905146 0.4251 0 -0.4251 0.905146 0 0 0 1 -109.14117 171.8364 -72.41 4 'helical symmetry operation' ? ? 0.656336 0.754469 0 -0.754469 0.656336 0 0 0 1 -135.76437 362.91554 -61.27 5 'helical symmetry operation' ? ? 0.295691 0.955284 0 -0.955284 0.295691 0 0 0 1 -82.94319 548.46865 -50.13 6 'helical symmetry operation' ? ? -0.115336 0.993327 0 -0.993327 -0.115336 0 0 0 1 40.32214 696.8792 -38.99 7 'helical symmetry operation' ? ? -0.506711 0.862116 0 -0.862116 -0.506711 0 0 0 1 213.02835 782.85942 -27.85 8 'helical symmetry operation' ? ? -0.811747 0.584009 0 -0.584009 -0.811747 0 0 0 1 405.74792 791.75907 -16.71 9 'helical symmetry operation' ? ? -0.978469 0.206392 0 -0.206392 -0.978469 0 0 0 1 585.64321 722.06174 -5.57 10 'helical symmetry operation' ? ? -0.978469 -0.206392 0 0.206392 -0.978469 0 0 0 1 722.06174 585.64321 5.57 11 'helical symmetry operation' ? ? -0.811747 -0.584009 0 0.584009 -0.811747 0 0 0 1 791.75907 405.74792 16.71 12 'helical symmetry operation' ? ? -0.506711 -0.862116 0 0.862116 -0.506711 0 0 0 1 782.85942 213.02835 27.85 13 'helical symmetry operation' ? ? -0.115336 -0.993327 0 0.993327 -0.115336 0 0 0 1 696.8792 40.32214 38.99 14 'helical symmetry operation' ? ? 0.295691 -0.955284 0 0.955284 0.295691 0 0 0 1 548.46865 -82.94319 50.13 15 'helical symmetry operation' ? ? 0.656336 -0.754469 0 0.754469 0.656336 0 0 0 1 362.91554 -135.76437 61.27 16 'helical symmetry operation' ? ? 0.905146 -0.4251 0 0.4251 0.905146 0 0 0 1 171.8364 -109.14117 72.41 17 'helical symmetry operation' ? ? 0.999729 -0.023298 0 0.023298 0.999729 0 0 0 1 7.78933 -7.60992 83.55 18 'helical symmetry operation' ? ? 0.923966 0.382474 0 -0.382474 0.923966 0 0 0 1 -101.27356 151.52938 94.69 19 'helical symmetry operation' ? ? -0.983012 0.18354 0 -0.18354 -0.983012 0 0 0 1 594.69694 716.01075 -89.12 20 'helical symmetry operation' ? ? -0.973395 -0.229132 0 0.229132 -0.973395 0 0 0 1 727.90016 576.45095 -77.98 21 'helical symmetry operation' ? ? -0.797921 -0.602762 0 0.602762 -0.797921 0 0 0 1 793.38737 394.98068 -66.84 22 'helical symmetry operation' ? ? -0.486488 -0.873687 0 0.873687 -0.486488 0 0 0 1 780.00014 202.52078 -55.7 23 'helical symmetry operation' ? ? -0.092162 -0.995744 0 0.995744 -0.092162 0 0 0 1 690.01955 31.86461 -44.56 24 'helical symmetry operation' ? ? 0.317867 -0.948135 0 0.948135 0.317867 0 0 0 1 538.77744 -87.90958 -33.42 25 'helical symmetry operation' ? ? 0.673735 -0.738973 0 0.738973 0.673735 0 0 0 1 352.04407 -136.39341 -22.28 26 'helical symmetry operation' ? ? 0.914805 -0.403897 0 0.403897 0.914805 0 0 0 1 161.63706 -105.32566 -11.14 27 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 28 'helical symmetry operation' ? ? 0.914805 0.403897 0 -0.403897 0.914805 0 0 0 1 -105.32566 161.63706 11.14 29 'helical symmetry operation' ? ? 0.673735 0.738973 0 -0.738973 0.673735 0 0 0 1 -136.39341 352.04407 22.28 30 'helical symmetry operation' ? ? 0.317867 0.948135 0 -0.948135 0.317867 0 0 0 1 -87.90958 538.77744 33.42 31 'helical symmetry operation' ? ? -0.092162 0.995744 0 -0.995744 -0.092162 0 0 0 1 31.86461 690.01955 44.56 32 'helical symmetry operation' ? ? -0.486488 0.873687 0 -0.873687 -0.486488 0 0 0 1 202.52078 780.00014 55.7 33 'helical symmetry operation' ? ? -0.797921 0.602762 0 -0.602762 -0.797921 0 0 0 1 394.98068 793.38737 66.84 34 'helical symmetry operation' ? ? -0.973395 0.229132 0 -0.229132 -0.973395 0 0 0 1 576.45095 727.90016 77.98 35 'helical symmetry operation' ? ? -0.983012 -0.18354 0 0.18354 -0.983012 0 0 0 1 716.01075 594.69694 89.12 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 71 A GLU 71 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc2 F O3G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc3 F O3B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc4 F O1B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc5 C OE1 GLU 71 C GLU 71 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 I O1G GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 E OG SER 247 K SER 488 1_555 M MG MG . K MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc8 M MG MG . K MG 701 1_555 N O1G ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc9 M MG MG . K MG 701 1_555 N O3G ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 M MG MG . K MG 701 1_555 N O2B ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6B0C _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 501 501 GTP GTP . G 5 MG A 1 502 502 MG MG . H 6 GDP B 1 501 501 GDP GDP . I 4 GTP C 1 501 501 GTP GTP . J 5 MG C 1 502 502 MG MG . K 6 GDP D 1 501 501 GDP GDP . L 7 TA1 D 1 502 502 TA1 TA1 . M 5 MG K 1 701 806 MG MG . N 8 ANP K 1 702 807 ANP ANP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 258.289 _atom_site.Cartn_y 133.749 _atom_site.Cartn_z 335.914 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #