data_6B0C
#
_model_server_result.job_id            OQOZrx65PAGFMl8JeB6jfQ 
_model_server_result.datetime_utc      '2025-07-05 14:02:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b0c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":702}' 
#
_entry.id    6B0C 
#
_exptl.entry_id    6B0C 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? 175-meric 175 'representative helical assembly' 1 
? pentameric 5 'helical asymmetric unit' 2 
? pentameric 5 'helical asymmetric unit, std helical frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 (1-35) 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 27 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 H 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
1 'helical symmetry operation' ? ? 0.923966 -0.382474 0 0.382474 0.923966 0 0 0 1 151.52938 -101.27356 -94.69 
2 'helical symmetry operation' ? ? 0.999729 0.023298 0 -0.023298 0.999729 0 0 0 1 -7.60992 7.78933 -83.55 
3 'helical symmetry operation' ? ? 0.905146 0.4251 0 -0.4251 0.905146 0 0 0 1 -109.14117 171.8364 -72.41 
4 'helical symmetry operation' ? ? 0.656336 0.754469 0 -0.754469 0.656336 0 0 0 1 -135.76437 362.91554 -61.27 
5 'helical symmetry operation' ? ? 0.295691 0.955284 0 -0.955284 0.295691 0 0 0 1 -82.94319 548.46865 -50.13 
6 'helical symmetry operation' ? ? -0.115336 0.993327 0 -0.993327 -0.115336 0 0 0 1 40.32214 696.8792 -38.99 
7 'helical symmetry operation' ? ? -0.506711 0.862116 0 -0.862116 -0.506711 0 0 0 1 213.02835 782.85942 -27.85 
8 'helical symmetry operation' ? ? -0.811747 0.584009 0 -0.584009 -0.811747 0 0 0 1 405.74792 791.75907 -16.71 
9 'helical symmetry operation' ? ? -0.978469 0.206392 0 -0.206392 -0.978469 0 0 0 1 585.64321 722.06174 -5.57 
10 'helical symmetry operation' ? ? -0.978469 -0.206392 0 0.206392 -0.978469 0 0 0 1 722.06174 585.64321 5.57 
11 'helical symmetry operation' ? ? -0.811747 -0.584009 0 0.584009 -0.811747 0 0 0 1 791.75907 405.74792 16.71 
12 'helical symmetry operation' ? ? -0.506711 -0.862116 0 0.862116 -0.506711 0 0 0 1 782.85942 213.02835 27.85 
13 'helical symmetry operation' ? ? -0.115336 -0.993327 0 0.993327 -0.115336 0 0 0 1 696.8792 40.32214 38.99 
14 'helical symmetry operation' ? ? 0.295691 -0.955284 0 0.955284 0.295691 0 0 0 1 548.46865 -82.94319 50.13 
15 'helical symmetry operation' ? ? 0.656336 -0.754469 0 0.754469 0.656336 0 0 0 1 362.91554 -135.76437 61.27 
16 'helical symmetry operation' ? ? 0.905146 -0.4251 0 0.4251 0.905146 0 0 0 1 171.8364 -109.14117 72.41 
17 'helical symmetry operation' ? ? 0.999729 -0.023298 0 0.023298 0.999729 0 0 0 1 7.78933 -7.60992 83.55 
18 'helical symmetry operation' ? ? 0.923966 0.382474 0 -0.382474 0.923966 0 0 0 1 -101.27356 151.52938 94.69 
19 'helical symmetry operation' ? ? -0.983012 0.18354 0 -0.18354 -0.983012 0 0 0 1 594.69694 716.01075 -89.12 
20 'helical symmetry operation' ? ? -0.973395 -0.229132 0 0.229132 -0.973395 0 0 0 1 727.90016 576.45095 -77.98 
21 'helical symmetry operation' ? ? -0.797921 -0.602762 0 0.602762 -0.797921 0 0 0 1 793.38737 394.98068 -66.84 
22 'helical symmetry operation' ? ? -0.486488 -0.873687 0 0.873687 -0.486488 0 0 0 1 780.00014 202.52078 -55.7 
23 'helical symmetry operation' ? ? -0.092162 -0.995744 0 0.995744 -0.092162 0 0 0 1 690.01955 31.86461 -44.56 
24 'helical symmetry operation' ? ? 0.317867 -0.948135 0 0.948135 0.317867 0 0 0 1 538.77744 -87.90958 -33.42 
25 'helical symmetry operation' ? ? 0.673735 -0.738973 0 0.738973 0.673735 0 0 0 1 352.04407 -136.39341 -22.28 
26 'helical symmetry operation' ? ? 0.914805 -0.403897 0 0.403897 0.914805 0 0 0 1 161.63706 -105.32566 -11.14 
27 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
28 'helical symmetry operation' ? ? 0.914805 0.403897 0 -0.403897 0.914805 0 0 0 1 -105.32566 161.63706 11.14 
29 'helical symmetry operation' ? ? 0.673735 0.738973 0 -0.738973 0.673735 0 0 0 1 -136.39341 352.04407 22.28 
30 'helical symmetry operation' ? ? 0.317867 0.948135 0 -0.948135 0.317867 0 0 0 1 -87.90958 538.77744 33.42 
31 'helical symmetry operation' ? ? -0.092162 0.995744 0 -0.995744 -0.092162 0 0 0 1 31.86461 690.01955 44.56 
32 'helical symmetry operation' ? ? -0.486488 0.873687 0 -0.873687 -0.486488 0 0 0 1 202.52078 780.00014 55.7 
33 'helical symmetry operation' ? ? -0.797921 0.602762 0 -0.602762 -0.797921 0 0 0 1 394.98068 793.38737 66.84 
34 'helical symmetry operation' ? ? -0.973395 0.229132 0 -0.229132 -0.973395 0 0 0 1 576.45095 727.90016 77.98 
35 'helical symmetry operation' ? ? -0.983012 -0.18354 0 0.18354 -0.983012 0 0 0 1 716.01075 594.69694 89.12 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 71 A GLU 71 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? 
metalc ? metalc2 F O3G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
metalc ? metalc3 F O3B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
metalc ? metalc4 F O1B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
metalc ? metalc5 C OE1 GLU 71 C GLU 71 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc6 I O1G GTP . C GTP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc7 E OG SER 247 K SER 488 1_555 M MG MG . K MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc8 M MG MG . K MG 701 1_555 N O1G ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc9 M MG MG . K MG 701 1_555 N O3G ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc10 M MG MG . K MG 701 1_555 N O2B ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     6B0C 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 501 501 GTP GTP . 
G 5 MG A 1 502 502 MG MG . 
H 6 GDP B 1 501 501 GDP GDP . 
I 4 GTP C 1 501 501 GTP GTP . 
J 5 MG C 1 502 502 MG MG . 
K 6 GDP D 1 501 501 GDP GDP . 
L 7 TA1 D 1 502 502 TA1 TA1 . 
M 5 MG K 1 701 806 MG MG . 
N 8 ANP K 1 702 807 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . N 8 267.691 169.423 341.453 1 126.64 ? PG ANP 702 K 1 
HETATM 2 O O1G ANP . . . N 8 267.109 169.677 340.013 1 126.64 ? O1G ANP 702 K 1 
HETATM 3 O O2G ANP . . . N 8 267.184 168.039 342.001 1 126.64 ? O2G ANP 702 K 1 
HETATM 4 O O3G ANP . . . N 8 267.308 170.532 342.372 1 126.64 ? O3G ANP 702 K 1 
HETATM 5 P PB ANP . . . N 8 269.725 170.623 340.247 1 126.64 ? PB ANP 702 K 1 
HETATM 6 O O1B ANP . . . N 8 269.723 170.069 338.867 1 126.64 ? O1B ANP 702 K 1 
HETATM 7 O O2B ANP . . . N 8 268.639 171.722 340.331 1 126.64 ? O2B ANP 702 K 1 
HETATM 8 N N3B ANP . . . N 8 269.361 169.423 341.342 1 126.64 ? N3B ANP 702 K 1 
HETATM 9 P PA ANP . . . N 8 271.163 172.288 341.764 1 126.64 ? PA ANP 702 K 1 
HETATM 10 O O1A ANP . . . N 8 270.614 173.567 341.283 1 126.64 ? O1A ANP 702 K 1 
HETATM 11 O O2A ANP . . . N 8 270.428 171.665 342.951 1 126.64 ? O2A ANP 702 K 1 
HETATM 12 O O3A ANP . . . N 8 271.108 171.217 340.615 1 126.64 ? O3A ANP 702 K 1 
HETATM 13 O O5' ANP . . . N 8 272.695 172.514 342.053 1 126.64 ? O5' ANP 702 K 1 
HETATM 14 C C5' ANP . . . N 8 273.426 171.679 342.96 1 126.64 ? C5' ANP 702 K 1 
HETATM 15 C C4' ANP . . . N 8 274.676 172.407 343.391 1 126.64 ? C4' ANP 702 K 1 
HETATM 16 O O4' ANP . . . N 8 275.341 172.957 342.232 1 126.64 ? O4' ANP 702 K 1 
HETATM 17 C C3' ANP . . . N 8 274.463 173.568 344.364 1 126.64 ? C3' ANP 702 K 1 
HETATM 18 O O3' ANP . . . N 8 275.426 173.533 345.408 1 126.64 ? O3' ANP 702 K 1 
HETATM 19 C C2' ANP . . . N 8 274.644 174.803 343.482 1 126.64 ? C2' ANP 702 K 1 
HETATM 20 O O2' ANP . . . N 8 275.155 175.909 344.213 1 126.64 ? O2' ANP 702 K 1 
HETATM 21 C C1' ANP . . . N 8 275.684 174.301 342.489 1 126.64 ? C1' ANP 702 K 1 
HETATM 22 N N9 ANP . . . N 8 275.693 175.031 341.229 1 126.64 ? N9 ANP 702 K 1 
HETATM 23 C C8 ANP . . . N 8 274.807 174.906 340.195 1 126.64 ? C8 ANP 702 K 1 
HETATM 24 N N7 ANP . . . N 8 275.057 175.703 339.182 1 126.64 ? N7 ANP 702 K 1 
HETATM 25 C C5 ANP . . . N 8 276.189 176.399 339.586 1 126.64 ? C5 ANP 702 K 1 
HETATM 26 C C6 ANP . . . N 8 276.957 177.398 338.961 1 126.64 ? C6 ANP 702 K 1 
HETATM 27 N N6 ANP . . . N 8 276.699 177.885 337.749 1 126.64 ? N6 ANP 702 K 1 
HETATM 28 N N1 ANP . . . N 8 278.026 177.879 339.637 1 126.64 ? N1 ANP 702 K 1 
HETATM 29 C C2 ANP . . . N 8 278.294 177.39 340.85 1 126.64 ? C2 ANP 702 K 1 
HETATM 30 N N3 ANP . . . N 8 277.639 176.453 341.537 1 126.64 ? N3 ANP 702 K 1 
HETATM 31 C C4 ANP . . . N 8 276.587 175.993 340.848 1 126.64 ? C4 ANP 702 K 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#