data_6B0L # _model_server_result.job_id Y10HKkD9U2ev6s2h1X_xaQ _model_server_result.datetime_utc '2024-11-05 00:31:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6B0L # _exptl.entry_id 6B0L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 105-meric 105 'representative helical assembly' 1 ? trimeric 3 'helical asymmetric unit' 2 ? trimeric 3 'helical asymmetric unit, std helical frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 (1-35) A,B,C,D,E,F,G,H,I 2 27 A,B,C,D,E,F,G,H,I 3 H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'helical symmetry operation' ? ? 0.923284 -0.384118 0 0.384118 0.923284 0 0 0 1 126.58559 -84.43966 -93.5 2 'helical symmetry operation' ? ? 0.999764 0.021728 0 -0.021728 0.999764 0 0 0 1 -5.90348 6.03317 -82.5 3 'helical symmetry operation' ? ? 0.905724 0.423867 0 -0.423867 0.905724 0 0 0 1 -90.53489 142.32774 -71.5 4 'helical symmetry operation' ? ? 0.657204 0.753713 0 -0.753713 0.657204 0 0 0 1 -112.87391 301.19766 -60.5 5 'helical symmetry operation' ? ? 0.296592 0.955004 0 -0.955004 0.296592 0 0 0 1 -69.1104 455.54611 -49.5 6 'helical symmetry operation' ? ? -0.114608 0.993411 0 -0.993411 -0.114608 0 0 0 1 33.29133 579.0474 -38.5 7 'helical symmetry operation' ? ? -0.50626 0.862381 0 -0.862381 -0.50626 0 0 0 1 176.86567 650.63718 -27.5 8 'helical symmetry operation' ? ? -0.811564 0.584264 0 -0.584264 -0.811564 0 0 0 1 337.12457 658.1051 -16.5 9 'helical symmetry operation' ? ? -0.978448 0.206495 0 -0.206495 -0.978448 0 0 0 1 486.7343 600.17742 -5.5 10 'helical symmetry operation' ? ? -0.978448 -0.206495 0 0.206495 -0.978448 0 0 0 1 600.17742 486.7343 5.5 11 'helical symmetry operation' ? ? -0.811564 -0.584264 0 0.584264 -0.811564 0 0 0 1 658.1051 337.12457 16.5 12 'helical symmetry operation' ? ? -0.50626 -0.862381 0 0.862381 -0.50626 0 0 0 1 650.63718 176.86567 27.5 13 'helical symmetry operation' ? ? -0.114608 -0.993411 0 0.993411 -0.114608 0 0 0 1 579.0474 33.29133 38.5 14 'helical symmetry operation' ? ? 0.296592 -0.955004 0 0.955004 0.296592 0 0 0 1 455.54611 -69.1104 49.5 15 'helical symmetry operation' ? ? 0.657204 -0.753713 0 0.753713 0.657204 0 0 0 1 301.19766 -112.87391 60.5 16 'helical symmetry operation' ? ? 0.905724 -0.423867 0 0.423867 0.905724 0 0 0 1 142.32774 -90.53489 71.5 17 'helical symmetry operation' ? ? 0.999764 -0.021728 0 0.021728 0.999764 0 0 0 1 6.03317 -5.90348 82.5 18 'helical symmetry operation' ? ? 0.923284 0.384118 0 -0.384118 0.923284 0 0 0 1 -84.43966 126.58559 93.5 19 'helical symmetry operation' ? ? -0.982703 0.185186 0 -0.185186 -0.982703 0 0 0 1 493.75635 595.49332 -88 20 'helical symmetry operation' ? ? -0.97373 -0.227705 0 0.227705 -0.97373 0 0 0 1 604.70785 479.61212 -77 21 'helical symmetry operation' ? ? -0.798678 -0.601759 0 0.601759 -0.798678 0 0 0 1 659.37118 328.77908 -66 22 'helical symmetry operation' ? ? -0.487403 -0.873177 0 0.873177 -0.487403 0 0 0 1 648.42298 168.72027 -55 23 'helical symmetry operation' ? ? -0.092996 -0.995666 0 0.995666 -0.092996 0 0 0 1 573.73057 26.73531 -44 24 'helical symmetry operation' ? ? 0.317272 -0.948335 0 0.948335 0.317272 0 0 0 1 448.03348 -72.95886 -33 25 'helical symmetry operation' ? ? 0.673425 -0.739255 0 0.739255 0.673425 0 0 0 1 292.7706 -113.35841 -22 26 'helical symmetry operation' ? ? 0.91472 -0.404088 0 0.404088 0.91472 0 0 0 1 134.42355 -87.57279 -11 27 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 28 'helical symmetry operation' ? ? 0.91472 0.404088 0 -0.404088 0.91472 0 0 0 1 -87.57279 134.42355 11 29 'helical symmetry operation' ? ? 0.673425 0.739255 0 -0.739255 0.673425 0 0 0 1 -113.35841 292.7706 22 30 'helical symmetry operation' ? ? 0.317272 0.948335 0 -0.948335 0.317272 0 0 0 1 -72.95886 448.03348 33 31 'helical symmetry operation' ? ? -0.092996 0.995666 0 -0.995666 -0.092996 0 0 0 1 26.73531 573.73057 44 32 'helical symmetry operation' ? ? -0.487403 0.873177 0 -0.873177 -0.487403 0 0 0 1 168.72027 648.42298 55 33 'helical symmetry operation' ? ? -0.798678 0.601759 0 -0.601759 -0.798678 0 0 0 1 328.77908 659.37118 66 34 'helical symmetry operation' ? ? -0.97373 0.227705 0 -0.227705 -0.97373 0 0 0 1 479.61212 604.70785 77 35 'helical symmetry operation' ? ? -0.982703 -0.185186 0 0.185186 -0.982703 0 0 0 1 595.49332 493.75635 88 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 11 A GLN 11 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 D O2G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 H MG MG . K MG 701 1_555 I O2B ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 H MG MG . K MG 701 1_555 I O2G ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 224 n n PG O2G GTP sing 225 n n PG O3G GTP sing 226 n n PG O3B GTP sing 227 n n O2G HOG2 GTP sing 228 n n O3G HOG3 GTP sing 229 n n O3B PB GTP sing 230 n n PB O1B GTP doub 231 n n PB O2B GTP sing 232 n n PB O3A GTP sing 233 n n O2B HOB2 GTP sing 234 n n O3A PA GTP sing 235 n n PA O1A GTP doub 236 n n PA O2A GTP sing 237 n n PA O5' GTP sing 238 n n O2A HOA2 GTP sing 239 n n O5' C5' GTP sing 240 n n C5' C4' GTP sing 241 n n C5' H5' GTP sing 242 n n C5' "H5''" GTP sing 243 n n C4' O4' GTP sing 244 n n C4' C3' GTP sing 245 n n C4' H4' GTP sing 246 n n O4' C1' GTP sing 247 n n C3' O3' GTP sing 248 n n C3' C2' GTP sing 249 n n C3' H3' GTP sing 250 n n O3' HO3' GTP sing 251 n n C2' O2' GTP sing 252 n n C2' C1' GTP sing 253 n n C2' H2' GTP sing 254 n n O2' HO2' GTP sing 255 n n C1' N9 GTP sing 256 n n C1' H1' GTP sing 257 n n N9 C8 GTP sing 258 n y N9 C4 GTP sing 259 n y C8 N7 GTP doub 260 n y C8 H8 GTP sing 261 n n N7 C5 GTP sing 262 n y C5 C6 GTP sing 263 n n C5 C4 GTP doub 264 n y C6 O6 GTP doub 265 n n C6 N1 GTP sing 266 n n N1 C2 GTP sing 267 n n N1 HN1 GTP sing 268 n n C2 N2 GTP sing 269 n n C2 N3 GTP doub 270 n n N2 HN21 GTP sing 271 n n N2 HN22 GTP sing 272 n n N3 C4 GTP sing 273 n n # _atom_sites.entry_id 6B0L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 GDP B 1 501 501 GDP GDP . G 7 TA1 B 1 502 502 TA1 TA1 . H 5 MG K 1 701 701 MG MG . I 8 ANP K 1 702 702 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 160.106 218.365 263.548 1 24.02 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . D 4 159.374 219.645 263.642 1 28.53 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . D 4 161.506 218.419 264.002 1 22.49 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . D 4 159.372 217.216 264.026 1 22.94 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . D 4 160.135 218.013 261.976 1 24.83 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . D 4 161.388 217.98 260.973 1 24.77 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . D 4 160.814 218.02 259.612 1 26.08 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . D 4 162.341 219.037 261.333 1 21.6 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . D 4 162.008 216.538 261.219 1 26.8 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . D 4 163.204 215.852 260.411 1 25.9 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . D 4 163.226 216.445 259.058 1 25.9 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . D 4 164.425 215.824 261.23 1 28.63 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . D 4 162.606 214.389 260.317 1 23.96 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . D 4 163.284 213.261 260.834 1 25.91 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . D 4 163.549 212.261 259.722 1 27.99 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . D 4 164.296 212.895 258.705 1 23.47 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . D 4 164.373 211.075 260.183 1 22.85 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . D 4 163.954 209.934 259.438 1 25.42 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . D 4 165.787 211.484 259.852 1 28.74 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . D 4 166.709 210.43 259.619 1 28.92 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . D 4 165.574 212.299 258.598 1 23.59 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . D 4 166.532 213.389 258.418 1 27.26 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . D 4 166.652 214.469 259.183 1 26.2 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . D 4 167.607 215.281 258.706 1 29.97 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . D 4 168.1 214.711 257.609 1 26.04 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . D 4 169.134 215.035 256.619 1 28.57 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . D 4 169.781 216.074 256.714 1 27.11 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . D 4 169.339 214.173 255.631 1 26.68 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . D 4 168.64 213.04 255.518 1 27.13 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . D 4 168.887 212.207 254.494 1 27.97 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . D 4 167.682 212.682 256.383 1 25.28 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . D 4 167.381 213.466 257.423 1 25.93 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 32 #