data_6B0L # _model_server_result.job_id h_zYnjogao6aNFgcrUmoTw _model_server_result.datetime_utc '2024-11-05 00:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":701}' # _entry.id 6B0L # _exptl.entry_id 6B0L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 105-meric 105 'representative helical assembly' 1 ? trimeric 3 'helical asymmetric unit' 2 ? trimeric 3 'helical asymmetric unit, std helical frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 (1-35) A,B,C,D,E,F,G,H,I 2 27 A,B,C,D,E,F,G,H,I 3 H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'helical symmetry operation' ? ? 0.923284 -0.384118 0 0.384118 0.923284 0 0 0 1 126.58559 -84.43966 -93.5 2 'helical symmetry operation' ? ? 0.999764 0.021728 0 -0.021728 0.999764 0 0 0 1 -5.90348 6.03317 -82.5 3 'helical symmetry operation' ? ? 0.905724 0.423867 0 -0.423867 0.905724 0 0 0 1 -90.53489 142.32774 -71.5 4 'helical symmetry operation' ? ? 0.657204 0.753713 0 -0.753713 0.657204 0 0 0 1 -112.87391 301.19766 -60.5 5 'helical symmetry operation' ? ? 0.296592 0.955004 0 -0.955004 0.296592 0 0 0 1 -69.1104 455.54611 -49.5 6 'helical symmetry operation' ? ? -0.114608 0.993411 0 -0.993411 -0.114608 0 0 0 1 33.29133 579.0474 -38.5 7 'helical symmetry operation' ? ? -0.50626 0.862381 0 -0.862381 -0.50626 0 0 0 1 176.86567 650.63718 -27.5 8 'helical symmetry operation' ? ? -0.811564 0.584264 0 -0.584264 -0.811564 0 0 0 1 337.12457 658.1051 -16.5 9 'helical symmetry operation' ? ? -0.978448 0.206495 0 -0.206495 -0.978448 0 0 0 1 486.7343 600.17742 -5.5 10 'helical symmetry operation' ? ? -0.978448 -0.206495 0 0.206495 -0.978448 0 0 0 1 600.17742 486.7343 5.5 11 'helical symmetry operation' ? ? -0.811564 -0.584264 0 0.584264 -0.811564 0 0 0 1 658.1051 337.12457 16.5 12 'helical symmetry operation' ? ? -0.50626 -0.862381 0 0.862381 -0.50626 0 0 0 1 650.63718 176.86567 27.5 13 'helical symmetry operation' ? ? -0.114608 -0.993411 0 0.993411 -0.114608 0 0 0 1 579.0474 33.29133 38.5 14 'helical symmetry operation' ? ? 0.296592 -0.955004 0 0.955004 0.296592 0 0 0 1 455.54611 -69.1104 49.5 15 'helical symmetry operation' ? ? 0.657204 -0.753713 0 0.753713 0.657204 0 0 0 1 301.19766 -112.87391 60.5 16 'helical symmetry operation' ? ? 0.905724 -0.423867 0 0.423867 0.905724 0 0 0 1 142.32774 -90.53489 71.5 17 'helical symmetry operation' ? ? 0.999764 -0.021728 0 0.021728 0.999764 0 0 0 1 6.03317 -5.90348 82.5 18 'helical symmetry operation' ? ? 0.923284 0.384118 0 -0.384118 0.923284 0 0 0 1 -84.43966 126.58559 93.5 19 'helical symmetry operation' ? ? -0.982703 0.185186 0 -0.185186 -0.982703 0 0 0 1 493.75635 595.49332 -88 20 'helical symmetry operation' ? ? -0.97373 -0.227705 0 0.227705 -0.97373 0 0 0 1 604.70785 479.61212 -77 21 'helical symmetry operation' ? ? -0.798678 -0.601759 0 0.601759 -0.798678 0 0 0 1 659.37118 328.77908 -66 22 'helical symmetry operation' ? ? -0.487403 -0.873177 0 0.873177 -0.487403 0 0 0 1 648.42298 168.72027 -55 23 'helical symmetry operation' ? ? -0.092996 -0.995666 0 0.995666 -0.092996 0 0 0 1 573.73057 26.73531 -44 24 'helical symmetry operation' ? ? 0.317272 -0.948335 0 0.948335 0.317272 0 0 0 1 448.03348 -72.95886 -33 25 'helical symmetry operation' ? ? 0.673425 -0.739255 0 0.739255 0.673425 0 0 0 1 292.7706 -113.35841 -22 26 'helical symmetry operation' ? ? 0.91472 -0.404088 0 0.404088 0.91472 0 0 0 1 134.42355 -87.57279 -11 27 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 28 'helical symmetry operation' ? ? 0.91472 0.404088 0 -0.404088 0.91472 0 0 0 1 -87.57279 134.42355 11 29 'helical symmetry operation' ? ? 0.673425 0.739255 0 -0.739255 0.673425 0 0 0 1 -113.35841 292.7706 22 30 'helical symmetry operation' ? ? 0.317272 0.948335 0 -0.948335 0.317272 0 0 0 1 -72.95886 448.03348 33 31 'helical symmetry operation' ? ? -0.092996 0.995666 0 -0.995666 -0.092996 0 0 0 1 26.73531 573.73057 44 32 'helical symmetry operation' ? ? -0.487403 0.873177 0 -0.873177 -0.487403 0 0 0 1 168.72027 648.42298 55 33 'helical symmetry operation' ? ? -0.798678 0.601759 0 -0.601759 -0.798678 0 0 0 1 328.77908 659.37118 66 34 'helical symmetry operation' ? ? -0.97373 0.227705 0 -0.227705 -0.97373 0 0 0 1 479.61212 604.70785 77 35 'helical symmetry operation' ? ? -0.982703 -0.185186 0 0.185186 -0.982703 0 0 0 1 595.49332 493.75635 88 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 11 A GLN 11 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 D O2G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 H MG MG . K MG 701 1_555 I O2B ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 H MG MG . K MG 701 1_555 I O2G ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6B0L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 GDP B 1 501 501 GDP GDP . G 7 TA1 B 1 502 502 TA1 TA1 . H 5 MG K 1 701 701 MG MG . I 8 ANP K 1 702 702 ANP ANP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 120.974 _atom_site.Cartn_y 221.626 _atom_site.Cartn_z 268.28 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 701 _atom_site.auth_asym_id K _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #