data_6B0L # _model_server_result.job_id cbLOoQsRgFJzQBDOemEmtQ _model_server_result.datetime_utc '2024-11-05 00:29:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":702}' # _entry.id 6B0L # _exptl.entry_id 6B0L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 105-meric 105 'representative helical assembly' 1 ? trimeric 3 'helical asymmetric unit' 2 ? trimeric 3 'helical asymmetric unit, std helical frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 (1-35) A,B,C,D,E,F,G,H,I 2 27 A,B,C,D,E,F,G,H,I 3 H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'helical symmetry operation' ? ? 0.923284 -0.384118 0 0.384118 0.923284 0 0 0 1 126.58559 -84.43966 -93.5 2 'helical symmetry operation' ? ? 0.999764 0.021728 0 -0.021728 0.999764 0 0 0 1 -5.90348 6.03317 -82.5 3 'helical symmetry operation' ? ? 0.905724 0.423867 0 -0.423867 0.905724 0 0 0 1 -90.53489 142.32774 -71.5 4 'helical symmetry operation' ? ? 0.657204 0.753713 0 -0.753713 0.657204 0 0 0 1 -112.87391 301.19766 -60.5 5 'helical symmetry operation' ? ? 0.296592 0.955004 0 -0.955004 0.296592 0 0 0 1 -69.1104 455.54611 -49.5 6 'helical symmetry operation' ? ? -0.114608 0.993411 0 -0.993411 -0.114608 0 0 0 1 33.29133 579.0474 -38.5 7 'helical symmetry operation' ? ? -0.50626 0.862381 0 -0.862381 -0.50626 0 0 0 1 176.86567 650.63718 -27.5 8 'helical symmetry operation' ? ? -0.811564 0.584264 0 -0.584264 -0.811564 0 0 0 1 337.12457 658.1051 -16.5 9 'helical symmetry operation' ? ? -0.978448 0.206495 0 -0.206495 -0.978448 0 0 0 1 486.7343 600.17742 -5.5 10 'helical symmetry operation' ? ? -0.978448 -0.206495 0 0.206495 -0.978448 0 0 0 1 600.17742 486.7343 5.5 11 'helical symmetry operation' ? ? -0.811564 -0.584264 0 0.584264 -0.811564 0 0 0 1 658.1051 337.12457 16.5 12 'helical symmetry operation' ? ? -0.50626 -0.862381 0 0.862381 -0.50626 0 0 0 1 650.63718 176.86567 27.5 13 'helical symmetry operation' ? ? -0.114608 -0.993411 0 0.993411 -0.114608 0 0 0 1 579.0474 33.29133 38.5 14 'helical symmetry operation' ? ? 0.296592 -0.955004 0 0.955004 0.296592 0 0 0 1 455.54611 -69.1104 49.5 15 'helical symmetry operation' ? ? 0.657204 -0.753713 0 0.753713 0.657204 0 0 0 1 301.19766 -112.87391 60.5 16 'helical symmetry operation' ? ? 0.905724 -0.423867 0 0.423867 0.905724 0 0 0 1 142.32774 -90.53489 71.5 17 'helical symmetry operation' ? ? 0.999764 -0.021728 0 0.021728 0.999764 0 0 0 1 6.03317 -5.90348 82.5 18 'helical symmetry operation' ? ? 0.923284 0.384118 0 -0.384118 0.923284 0 0 0 1 -84.43966 126.58559 93.5 19 'helical symmetry operation' ? ? -0.982703 0.185186 0 -0.185186 -0.982703 0 0 0 1 493.75635 595.49332 -88 20 'helical symmetry operation' ? ? -0.97373 -0.227705 0 0.227705 -0.97373 0 0 0 1 604.70785 479.61212 -77 21 'helical symmetry operation' ? ? -0.798678 -0.601759 0 0.601759 -0.798678 0 0 0 1 659.37118 328.77908 -66 22 'helical symmetry operation' ? ? -0.487403 -0.873177 0 0.873177 -0.487403 0 0 0 1 648.42298 168.72027 -55 23 'helical symmetry operation' ? ? -0.092996 -0.995666 0 0.995666 -0.092996 0 0 0 1 573.73057 26.73531 -44 24 'helical symmetry operation' ? ? 0.317272 -0.948335 0 0.948335 0.317272 0 0 0 1 448.03348 -72.95886 -33 25 'helical symmetry operation' ? ? 0.673425 -0.739255 0 0.739255 0.673425 0 0 0 1 292.7706 -113.35841 -22 26 'helical symmetry operation' ? ? 0.91472 -0.404088 0 0.404088 0.91472 0 0 0 1 134.42355 -87.57279 -11 27 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 28 'helical symmetry operation' ? ? 0.91472 0.404088 0 -0.404088 0.91472 0 0 0 1 -87.57279 134.42355 11 29 'helical symmetry operation' ? ? 0.673425 0.739255 0 -0.739255 0.673425 0 0 0 1 -113.35841 292.7706 22 30 'helical symmetry operation' ? ? 0.317272 0.948335 0 -0.948335 0.317272 0 0 0 1 -72.95886 448.03348 33 31 'helical symmetry operation' ? ? -0.092996 0.995666 0 -0.995666 -0.092996 0 0 0 1 26.73531 573.73057 44 32 'helical symmetry operation' ? ? -0.487403 0.873177 0 -0.873177 -0.487403 0 0 0 1 168.72027 648.42298 55 33 'helical symmetry operation' ? ? -0.798678 0.601759 0 -0.601759 -0.798678 0 0 0 1 328.77908 659.37118 66 34 'helical symmetry operation' ? ? -0.97373 0.227705 0 -0.227705 -0.97373 0 0 0 1 479.61212 604.70785 77 35 'helical symmetry operation' ? ? -0.982703 -0.185186 0 0.185186 -0.982703 0 0 0 1 595.49332 493.75635 88 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 11 A GLN 11 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 D O2G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 H MG MG . K MG 701 1_555 I O2B ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 H MG MG . K MG 701 1_555 I O2G ANP . K ANP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6B0L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 GDP B 1 501 501 GDP GDP . G 7 TA1 B 1 502 502 TA1 TA1 . H 5 MG K 1 701 701 MG MG . I 8 ANP K 1 702 702 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 8 122.897 222.14 265.752 1 6.75 ? PG ANP 702 K 1 HETATM 2 O O1G ANP . . . I 8 123.063 223.313 264.823 1 6.44 ? O1G ANP 702 K 1 HETATM 3 O O2G ANP . . . I 8 122.266 222.52 267.082 1 6.32 ? O2G ANP 702 K 1 HETATM 4 O O3G ANP . . . I 8 124.269 221.484 266.028 1 6.42 ? O3G ANP 702 K 1 HETATM 5 P PB ANP . . . I 8 121.105 219.813 265.578 1 6.79 ? PB ANP 702 K 1 HETATM 6 O O1B ANP . . . I 8 121.756 218.487 265.326 1 6.51 ? O1B ANP 702 K 1 HETATM 7 O O2B ANP . . . I 8 120.627 220.072 267 1 6.18 ? O2B ANP 702 K 1 HETATM 8 N N3B ANP . . . I 8 121.954 221.085 264.94 1 6.64 ? N3B ANP 702 K 1 HETATM 9 P PA ANP . . . I 8 118.252 219.891 265.119 1 7.35 ? PA ANP 702 K 1 HETATM 10 O O1A ANP . . . I 8 117.991 221.329 265.433 1 7.14 ? O1A ANP 702 K 1 HETATM 11 O O2A ANP . . . I 8 117.916 218.769 266.075 1 7.35 ? O2A ANP 702 K 1 HETATM 12 O O3A ANP . . . I 8 119.799 219.782 264.642 1 6.84 ? O3A ANP 702 K 1 HETATM 13 O O5' ANP . . . I 8 117.497 219.506 263.753 1 8.24 ? O5' ANP 702 K 1 HETATM 14 C C5' ANP . . . I 8 117.586 220.318 262.575 1 9.49 ? C5' ANP 702 K 1 HETATM 15 C C4' ANP . . . I 8 116.268 220.252 261.802 1 11.2 ? C4' ANP 702 K 1 HETATM 16 O O4' ANP . . . I 8 116.075 218.908 261.336 1 11.48 ? O4' ANP 702 K 1 HETATM 17 C C3' ANP . . . I 8 115.101 220.635 262.69 1 12.56 ? C3' ANP 702 K 1 HETATM 18 O O3' ANP . . . I 8 114.175 221.479 261.966 1 14.94 ? O3' ANP 702 K 1 HETATM 19 C C2' ANP . . . I 8 114.516 219.295 263.06 1 12.66 ? C2' ANP 702 K 1 HETATM 20 O O2' ANP . . . I 8 113.121 219.349 263.437 1 14.73 ? O2' ANP 702 K 1 HETATM 21 C C1' ANP . . . I 8 114.815 218.444 261.833 1 12.24 ? C1' ANP 702 K 1 HETATM 22 N N9 ANP . . . I 8 115.007 217.041 262.214 1 11.75 ? N9 ANP 702 K 1 HETATM 23 C C8 ANP . . . I 8 116.069 216.58 262.921 1 11.26 ? C8 ANP 702 K 1 HETATM 24 N N7 ANP . . . I 8 115.952 215.263 263.121 1 11.34 ? N7 ANP 702 K 1 HETATM 25 C C5 ANP . . . I 8 114.793 214.859 262.525 1 11.53 ? C5 ANP 702 K 1 HETATM 26 C C6 ANP . . . I 8 114.067 213.59 262.356 1 11.59 ? C6 ANP 702 K 1 HETATM 27 N N6 ANP . . . I 8 114.535 212.438 262.836 1 11.85 ? N6 ANP 702 K 1 HETATM 28 N N1 ANP . . . I 8 112.895 213.63 261.669 1 12.4 ? N1 ANP 702 K 1 HETATM 29 C C2 ANP . . . I 8 112.385 214.754 261.149 1 12.03 ? C2 ANP 702 K 1 HETATM 30 N N3 ANP . . . I 8 112.995 215.96 261.265 1 12.8 ? N3 ANP 702 K 1 HETATM 31 C C4 ANP . . . I 8 114.2 216.032 261.913 1 11.73 ? C4 ANP 702 K 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 31 #