data_6B0W # _model_server_result.job_id w5bYlN0Zw4Q7WsQs59aGiA _model_server_result.datetime_utc '2024-11-24 07:06:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":307}' # _entry.id 6B0W # _exptl.entry_id 6B0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B0W _cell.length_a 61.063 _cell.length_b 66.724 _cell.length_c 124.027 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 135 L CYS 135 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 150 H CYS 140 1_555 B SG CYS 206 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6B0W _atom_sites.fract_transf_matrix[1][1] 0.016377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IPA L 1 301 2 IPA IPA . D 4 GOL L 1 302 1 GOL GOL . E 4 GOL L 1 303 8 GOL GOL . F 4 GOL L 1 304 11 GOL GOL . G 4 GOL L 1 305 12 GOL GOL . H 3 IPA H 1 301 7 IPA IPA . I 3 IPA H 1 302 8 IPA IPA . J 3 IPA H 1 303 9 IPA IPA . K 3 IPA H 1 304 10 IPA IPA . L 3 IPA H 1 305 11 IPA IPA . M 4 GOL H 1 306 4 GOL GOL . N 4 GOL H 1 307 7 GOL GOL . O 5 HOH L 1 401 298 HOH HOH . O 5 HOH L 2 402 215 HOH HOH . O 5 HOH L 3 403 103 HOH HOH . O 5 HOH L 4 404 134 HOH HOH . O 5 HOH L 5 405 60 HOH HOH . O 5 HOH L 6 406 13 HOH HOH . O 5 HOH L 7 407 160 HOH HOH . O 5 HOH L 8 408 167 HOH HOH . O 5 HOH L 9 409 11 HOH HOH . O 5 HOH L 10 410 7 HOH HOH . O 5 HOH L 11 411 23 HOH HOH . O 5 HOH L 12 412 58 HOH HOH . O 5 HOH L 13 413 78 HOH HOH . O 5 HOH L 14 414 51 HOH HOH . O 5 HOH L 15 415 4 HOH HOH . O 5 HOH L 16 416 18 HOH HOH . O 5 HOH L 17 417 32 HOH HOH . O 5 HOH L 18 418 53 HOH HOH . O 5 HOH L 19 419 24 HOH HOH . O 5 HOH L 20 420 172 HOH HOH . O 5 HOH L 21 421 6 HOH HOH . O 5 HOH L 22 422 77 HOH HOH . O 5 HOH L 23 423 54 HOH HOH . O 5 HOH L 24 424 101 HOH HOH . O 5 HOH L 25 425 228 HOH HOH . O 5 HOH L 26 426 36 HOH HOH . O 5 HOH L 27 427 91 HOH HOH . O 5 HOH L 28 428 8 HOH HOH . O 5 HOH L 29 429 90 HOH HOH . O 5 HOH L 30 430 34 HOH HOH . O 5 HOH L 31 431 97 HOH HOH . O 5 HOH L 32 432 96 HOH HOH . O 5 HOH L 33 433 216 HOH HOH . O 5 HOH L 34 434 117 HOH HOH . O 5 HOH L 35 435 41 HOH HOH . O 5 HOH L 36 436 56 HOH HOH . O 5 HOH L 37 437 9 HOH HOH . O 5 HOH L 38 438 94 HOH HOH . O 5 HOH L 39 439 17 HOH HOH . O 5 HOH L 40 440 259 HOH HOH . O 5 HOH L 41 441 170 HOH HOH . O 5 HOH L 42 442 2 HOH HOH . O 5 HOH L 43 443 202 HOH HOH . O 5 HOH L 44 444 21 HOH HOH . O 5 HOH L 45 445 76 HOH HOH . O 5 HOH L 46 446 45 HOH HOH . O 5 HOH L 47 447 232 HOH HOH . O 5 HOH L 48 448 104 HOH HOH . O 5 HOH L 49 449 119 HOH HOH . O 5 HOH L 50 450 16 HOH HOH . O 5 HOH L 51 451 291 HOH HOH . O 5 HOH L 52 452 230 HOH HOH . O 5 HOH L 53 453 147 HOH HOH . O 5 HOH L 54 454 26 HOH HOH . O 5 HOH L 55 455 71 HOH HOH . O 5 HOH L 56 456 31 HOH HOH . O 5 HOH L 57 457 67 HOH HOH . O 5 HOH L 58 458 253 HOH HOH . O 5 HOH L 59 459 266 HOH HOH . O 5 HOH L 60 460 148 HOH HOH . O 5 HOH L 61 461 49 HOH HOH . O 5 HOH L 62 462 27 HOH HOH . O 5 HOH L 63 463 106 HOH HOH . O 5 HOH L 64 464 132 HOH HOH . O 5 HOH L 65 465 114 HOH HOH . O 5 HOH L 66 466 292 HOH HOH . O 5 HOH L 67 467 52 HOH HOH . O 5 HOH L 68 468 265 HOH HOH . O 5 HOH L 69 469 189 HOH HOH . O 5 HOH L 70 470 314 HOH HOH . O 5 HOH L 71 471 229 HOH HOH . O 5 HOH L 72 472 28 HOH HOH . O 5 HOH L 73 473 12 HOH HOH . O 5 HOH L 74 474 201 HOH HOH . O 5 HOH L 75 475 111 HOH HOH . O 5 HOH L 76 476 100 HOH HOH . O 5 HOH L 77 477 120 HOH HOH . O 5 HOH L 78 478 273 HOH HOH . O 5 HOH L 79 479 307 HOH HOH . O 5 HOH L 80 480 39 HOH HOH . O 5 HOH L 81 481 198 HOH HOH . O 5 HOH L 82 482 75 HOH HOH . O 5 HOH L 83 483 85 HOH HOH . O 5 HOH L 84 484 177 HOH HOH . O 5 HOH L 85 485 55 HOH HOH . O 5 HOH L 86 486 50 HOH HOH . O 5 HOH L 87 487 214 HOH HOH . O 5 HOH L 88 488 86 HOH HOH . O 5 HOH L 89 489 138 HOH HOH . O 5 HOH L 90 490 205 HOH HOH . O 5 HOH L 91 491 143 HOH HOH . O 5 HOH L 92 492 174 HOH HOH . O 5 HOH L 93 493 73 HOH HOH . O 5 HOH L 94 494 127 HOH HOH . O 5 HOH L 95 495 196 HOH HOH . O 5 HOH L 96 496 81 HOH HOH . O 5 HOH L 97 497 197 HOH HOH . O 5 HOH L 98 498 217 HOH HOH . O 5 HOH L 99 499 210 HOH HOH . O 5 HOH L 100 500 84 HOH HOH . O 5 HOH L 101 501 223 HOH HOH . O 5 HOH L 102 502 61 HOH HOH . O 5 HOH L 103 503 126 HOH HOH . O 5 HOH L 104 504 63 HOH HOH . O 5 HOH L 105 505 207 HOH HOH . O 5 HOH L 106 506 62 HOH HOH . O 5 HOH L 107 507 112 HOH HOH . O 5 HOH L 108 508 262 HOH HOH . O 5 HOH L 109 509 199 HOH HOH . O 5 HOH L 110 510 263 HOH HOH . O 5 HOH L 111 511 204 HOH HOH . O 5 HOH L 112 512 272 HOH HOH . O 5 HOH L 113 513 142 HOH HOH . O 5 HOH L 114 514 181 HOH HOH . O 5 HOH L 115 515 227 HOH HOH . O 5 HOH L 116 516 299 HOH HOH . O 5 HOH L 117 517 171 HOH HOH . O 5 HOH L 118 518 294 HOH HOH . O 5 HOH L 119 519 158 HOH HOH . O 5 HOH L 120 520 302 HOH HOH . O 5 HOH L 121 521 276 HOH HOH . O 5 HOH L 122 522 225 HOH HOH . O 5 HOH L 123 523 308 HOH HOH . O 5 HOH L 124 524 242 HOH HOH . O 5 HOH L 125 525 306 HOH HOH . O 5 HOH L 126 526 191 HOH HOH . O 5 HOH L 127 527 113 HOH HOH . O 5 HOH L 128 528 176 HOH HOH . O 5 HOH L 129 529 213 HOH HOH . O 5 HOH L 130 530 150 HOH HOH . O 5 HOH L 131 531 161 HOH HOH . O 5 HOH L 132 532 269 HOH HOH . P 5 HOH H 1 401 135 HOH HOH . P 5 HOH H 2 402 255 HOH HOH . P 5 HOH H 3 403 141 HOH HOH . P 5 HOH H 4 404 130 HOH HOH . P 5 HOH H 5 405 256 HOH HOH . P 5 HOH H 6 406 146 HOH HOH . P 5 HOH H 7 407 65 HOH HOH . P 5 HOH H 8 408 140 HOH HOH . P 5 HOH H 9 409 118 HOH HOH . P 5 HOH H 10 410 193 HOH HOH . P 5 HOH H 11 411 89 HOH HOH . P 5 HOH H 12 412 125 HOH HOH . P 5 HOH H 13 413 315 HOH HOH . P 5 HOH H 14 414 87 HOH HOH . P 5 HOH H 15 415 203 HOH HOH . P 5 HOH H 16 416 129 HOH HOH . P 5 HOH H 17 417 66 HOH HOH . P 5 HOH H 18 418 44 HOH HOH . P 5 HOH H 19 419 1 HOH HOH . P 5 HOH H 20 420 69 HOH HOH . P 5 HOH H 21 421 99 HOH HOH . P 5 HOH H 22 422 14 HOH HOH . P 5 HOH H 23 423 169 HOH HOH . P 5 HOH H 24 424 102 HOH HOH . P 5 HOH H 25 425 136 HOH HOH . P 5 HOH H 26 426 311 HOH HOH . P 5 HOH H 27 427 19 HOH HOH . P 5 HOH H 28 428 48 HOH HOH . P 5 HOH H 29 429 107 HOH HOH . P 5 HOH H 30 430 3 HOH HOH . P 5 HOH H 31 431 46 HOH HOH . P 5 HOH H 32 432 234 HOH HOH . P 5 HOH H 33 433 122 HOH HOH . P 5 HOH H 34 434 5 HOH HOH . P 5 HOH H 35 435 15 HOH HOH . P 5 HOH H 36 436 29 HOH HOH . P 5 HOH H 37 437 70 HOH HOH . P 5 HOH H 38 438 277 HOH HOH . P 5 HOH H 39 439 47 HOH HOH . P 5 HOH H 40 440 35 HOH HOH . P 5 HOH H 41 441 182 HOH HOH . P 5 HOH H 42 442 139 HOH HOH . P 5 HOH H 43 443 257 HOH HOH . P 5 HOH H 44 444 38 HOH HOH . P 5 HOH H 45 445 155 HOH HOH . P 5 HOH H 46 446 10 HOH HOH . P 5 HOH H 47 447 188 HOH HOH . P 5 HOH H 48 448 175 HOH HOH . P 5 HOH H 49 449 211 HOH HOH . P 5 HOH H 50 450 92 HOH HOH . P 5 HOH H 51 451 121 HOH HOH . P 5 HOH H 52 452 59 HOH HOH . P 5 HOH H 53 453 25 HOH HOH . P 5 HOH H 54 454 64 HOH HOH . P 5 HOH H 55 455 74 HOH HOH . P 5 HOH H 56 456 133 HOH HOH . P 5 HOH H 57 457 164 HOH HOH . P 5 HOH H 58 458 108 HOH HOH . P 5 HOH H 59 459 88 HOH HOH . P 5 HOH H 60 460 37 HOH HOH . P 5 HOH H 61 461 268 HOH HOH . P 5 HOH H 62 462 95 HOH HOH . P 5 HOH H 63 463 98 HOH HOH . P 5 HOH H 64 464 168 HOH HOH . P 5 HOH H 65 465 109 HOH HOH . P 5 HOH H 66 466 68 HOH HOH . P 5 HOH H 67 467 285 HOH HOH . P 5 HOH H 68 468 180 HOH HOH . P 5 HOH H 69 469 186 HOH HOH . P 5 HOH H 70 470 260 HOH HOH . P 5 HOH H 71 471 20 HOH HOH . P 5 HOH H 72 472 83 HOH HOH . P 5 HOH H 73 473 93 HOH HOH . P 5 HOH H 74 474 166 HOH HOH . P 5 HOH H 75 475 270 HOH HOH . P 5 HOH H 76 476 137 HOH HOH . P 5 HOH H 77 477 275 HOH HOH . P 5 HOH H 78 478 33 HOH HOH . P 5 HOH H 79 479 312 HOH HOH . P 5 HOH H 80 480 165 HOH HOH . P 5 HOH H 81 481 128 HOH HOH . P 5 HOH H 82 482 115 HOH HOH . P 5 HOH H 83 483 235 HOH HOH . P 5 HOH H 84 484 42 HOH HOH . P 5 HOH H 85 485 233 HOH HOH . P 5 HOH H 86 486 123 HOH HOH . P 5 HOH H 87 487 116 HOH HOH . P 5 HOH H 88 488 200 HOH HOH . P 5 HOH H 89 489 144 HOH HOH . P 5 HOH H 90 490 264 HOH HOH . P 5 HOH H 91 491 162 HOH HOH . P 5 HOH H 92 492 110 HOH HOH . P 5 HOH H 93 493 237 HOH HOH . P 5 HOH H 94 494 304 HOH HOH . P 5 HOH H 95 495 220 HOH HOH . P 5 HOH H 96 496 187 HOH HOH . P 5 HOH H 97 497 313 HOH HOH . P 5 HOH H 98 498 297 HOH HOH . P 5 HOH H 99 499 303 HOH HOH . P 5 HOH H 100 500 173 HOH HOH . P 5 HOH H 101 501 185 HOH HOH . P 5 HOH H 102 502 251 HOH HOH . P 5 HOH H 103 503 281 HOH HOH . P 5 HOH H 104 504 192 HOH HOH . P 5 HOH H 105 505 179 HOH HOH . P 5 HOH H 106 506 209 HOH HOH . P 5 HOH H 107 507 282 HOH HOH . P 5 HOH H 108 508 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 4 -9.935 3.591 -6.482 1 58.92 ? C1 GOL 307 H 1 HETATM 2 O O1 GOL . . . N 4 -11.081 3.009 -5.921 1 60.09 ? O1 GOL 307 H 1 HETATM 3 C C2 GOL . . . N 4 -9.718 4.944 -5.765 1 56 ? C2 GOL 307 H 1 HETATM 4 O O2 GOL . . . N 4 -9.735 4.806 -4.389 1 54.58 ? O2 GOL 307 H 1 HETATM 5 C C3 GOL . . . N 4 -8.356 5.449 -6.275 1 55.17 ? C3 GOL 307 H 1 HETATM 6 O O3 GOL . . . N 4 -8.053 6.596 -5.541 1 54.58 ? O3 GOL 307 H 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #