data_6B16 # _model_server_result.job_id NaEdaQuWhe1FoS67afPu0w _model_server_result.datetime_utc '2025-02-25 00:24:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6B16 # _exptl.entry_id 6B16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.416 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~4~-(5-cyclopropyl-1H-pyrazol-3-yl)-N~2~-[(1S)-1-(1H-pyrrolo[3,2-b]pyridin-5-yl)ethyl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.31 _cell.angle_gamma 90 _cell.entry_id 6B16 _cell.length_a 62.682 _cell.length_b 82.458 _cell.length_c 66.036 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 113 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 360 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 113 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 360 _struct_conn.ptnr2_symmetry 1_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H20 N8' _chem_comp.formula_weight 360.416 _chem_comp.id C7Y _chem_comp.mon_nstd_flag . _chem_comp.name N~4~-(5-cyclopropyl-1H-pyrazol-3-yl)-N~2~-[(1S)-1-(1H-pyrrolo[3,2-b]pyridin-5-yl)ethyl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 C7Y doub 70 n y C18 C19 C7Y sing 71 n y N27 C22 C7Y doub 72 n y N27 N25 C7Y sing 73 n y N21 C19 C7Y sing 74 n n N21 C22 C7Y sing 75 n n C17 N16 C7Y sing 76 n y C19 N20 C7Y doub 77 n y C22 C23 C7Y sing 78 n y N25 C24 C7Y sing 79 n y N16 C15 C7Y doub 80 n y N20 C15 C7Y sing 81 n y C23 C24 C7Y doub 82 n y C24 C28 C7Y sing 83 n n C15 N14 C7Y sing 84 n n C28 C30 C7Y sing 85 n n C28 C29 C7Y sing 86 n n N14 C2 C7Y sing 87 n n C30 C29 C7Y sing 88 n n C2 C4 C7Y sing 89 n n C2 C1 C7Y sing 90 n n C5 C6 C7Y doub 91 n y C5 C4 C7Y sing 92 n y C6 C7 C7Y sing 93 n y C4 N9 C7Y doub 94 n y N9 C8 C7Y sing 95 n y C7 C8 C7Y doub 96 n y C7 N12 C7Y sing 97 n y C8 C10 C7Y sing 98 n y N12 C11 C7Y sing 99 n y C10 C11 C7Y doub 100 n y C5 H1 C7Y sing 101 n n C6 H2 C7Y sing 102 n n C10 H3 C7Y sing 103 n n N12 H4 C7Y sing 104 n n C17 H5 C7Y sing 105 n n C28 H6 C7Y sing 106 n n C1 H7 C7Y sing 107 n n C1 H8 C7Y sing 108 n n C1 H9 C7Y sing 109 n n C2 H10 C7Y sing 110 n n C11 H11 C7Y sing 111 n n N14 H12 C7Y sing 112 n n C18 H13 C7Y sing 113 n n N21 H14 C7Y sing 114 n n C23 H15 C7Y sing 115 n n N25 H16 C7Y sing 116 n n C29 H17 C7Y sing 117 n n C29 H18 C7Y sing 118 n n C30 H19 C7Y sing 119 n n C30 H20 C7Y sing 120 n n # _atom_sites.entry_id 6B16 _atom_sites.fract_transf_matrix[1][1] 0.015954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004669 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C7Y A 1 601 1 C7Y LIG . D 3 SO4 A 1 602 1 SO4 SO4 . E 2 C7Y B 1 601 1 C7Y LIG . F 4 HOH A 1 701 19 HOH HOH . F 4 HOH A 2 702 40 HOH HOH . F 4 HOH A 3 703 15 HOH HOH . F 4 HOH A 4 704 25 HOH HOH . F 4 HOH A 5 705 41 HOH HOH . F 4 HOH A 6 706 20 HOH HOH . F 4 HOH A 7 707 11 HOH HOH . F 4 HOH A 8 708 33 HOH HOH . F 4 HOH A 9 709 3 HOH HOH . F 4 HOH A 10 710 4 HOH HOH . F 4 HOH A 11 711 36 HOH HOH . F 4 HOH A 12 712 9 HOH HOH . F 4 HOH A 13 713 17 HOH HOH . F 4 HOH A 14 714 7 HOH HOH . F 4 HOH A 15 715 37 HOH HOH . F 4 HOH A 16 716 34 HOH HOH . F 4 HOH A 17 717 46 HOH HOH . G 4 HOH B 1 701 22 HOH HOH . G 4 HOH B 2 702 45 HOH HOH . G 4 HOH B 3 703 31 HOH HOH . G 4 HOH B 4 704 10 HOH HOH . G 4 HOH B 5 705 27 HOH HOH . G 4 HOH B 6 706 32 HOH HOH . G 4 HOH B 7 707 13 HOH HOH . G 4 HOH B 8 708 12 HOH HOH . G 4 HOH B 9 709 1 HOH HOH . G 4 HOH B 10 710 8 HOH HOH . G 4 HOH B 11 711 6 HOH HOH . G 4 HOH B 12 712 2 HOH HOH . G 4 HOH B 13 713 23 HOH HOH . G 4 HOH B 14 714 38 HOH HOH . G 4 HOH B 15 715 44 HOH HOH . G 4 HOH B 16 716 35 HOH HOH . G 4 HOH B 17 717 26 HOH HOH . G 4 HOH B 18 718 5 HOH HOH . G 4 HOH B 19 719 24 HOH HOH . G 4 HOH B 20 720 21 HOH HOH . G 4 HOH B 21 721 18 HOH HOH . G 4 HOH B 22 722 14 HOH HOH . G 4 HOH B 23 723 43 HOH HOH . G 4 HOH B 24 724 39 HOH HOH . G 4 HOH B 25 725 16 HOH HOH . G 4 HOH B 26 726 30 HOH HOH . G 4 HOH B 27 727 28 HOH HOH . G 4 HOH B 28 728 42 HOH HOH . G 4 HOH B 29 729 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 C7Y . . . C 2 14.782 -12.984 13.749 1 64.33 ? C4 C7Y 601 A 1 HETATM 2 C C5 C7Y . . . C 2 14.473 -12.006 14.688 1 60.17 ? C5 C7Y 601 A 1 HETATM 3 C C6 C7Y . . . C 2 15.397 -11.009 14.956 1 60.62 ? C6 C7Y 601 A 1 HETATM 4 C C7 C7Y . . . C 2 16.611 -11.027 14.262 1 62.52 ? C7 C7Y 601 A 1 HETATM 5 C C8 C7Y . . . C 2 16.849 -12.051 13.325 1 62.72 ? C8 C7Y 601 A 1 HETATM 6 C C10 C7Y . . . C 2 18.181 -11.798 12.775 1 63.07 ? C10 C7Y 601 A 1 HETATM 7 N N12 C7Y . . . C 2 17.729 -10.222 14.267 1 62.88 ? N12 C7Y 601 A 1 HETATM 8 C C15 C7Y . . . C 2 12.591 -14.69 15.499 1 67.17 ? C15 C7Y 601 A 1 HETATM 9 C C17 C7Y . . . C 2 11.362 -15.465 17.291 1 67.27 ? C17 C7Y 601 A 1 HETATM 10 C C22 C7Y . . . C 2 16.007 -16.882 16.854 1 64.68 ? C22 C7Y 601 A 1 HETATM 11 C C24 C7Y . . . C 2 17.605 -17.052 15.29 1 61.52 ? C24 C7Y 601 A 1 HETATM 12 C C28 C7Y . . . C 2 18.445 -16.946 14.031 1 57.87 ? C28 C7Y 601 A 1 HETATM 13 C C1 C7Y . . . C 2 13.35 -13.92 11.981 1 68.26 ? C1 C7Y 601 A 1 HETATM 14 C C2 C7Y . . . C 2 13.797 -14.079 13.435 1 66.71 ? C2 C7Y 601 A 1 HETATM 15 N N9 C7Y . . . C 2 15.929 -12.984 13.109 1 63.08 ? N9 C7Y 601 A 1 HETATM 16 C C11 C7Y . . . C 2 18.652 -10.691 13.374 1 64.15 ? C11 C7Y 601 A 1 HETATM 17 N N14 C7Y . . . C 2 12.633 -13.977 14.313 1 65.04 ? N14 C7Y 601 A 1 HETATM 18 N N16 C7Y . . . C 2 11.441 -14.789 16.155 1 67.98 ? N16 C7Y 601 A 1 HETATM 19 C C18 C7Y . . . C 2 12.499 -16.072 17.791 1 69.1 ? C18 C7Y 601 A 1 HETATM 20 C C19 C7Y . . . C 2 13.698 -15.957 17.076 1 66.98 ? C19 C7Y 601 A 1 HETATM 21 N N20 C7Y . . . C 2 13.701 -15.258 15.946 1 64.9 ? N20 C7Y 601 A 1 HETATM 22 N N21 C7Y . . . C 2 14.844 -16.56 17.578 1 66.22 ? N21 C7Y 601 A 1 HETATM 23 C C23 C7Y . . . C 2 16.394 -16.494 15.551 1 63.14 ? C23 C7Y 601 A 1 HETATM 24 N N25 C7Y . . . C 2 17.965 -17.757 16.382 1 63.38 ? N25 C7Y 601 A 1 HETATM 25 N N27 C7Y . . . C 2 16.959 -17.64 17.342 1 64.74 ? N27 C7Y 601 A 1 HETATM 26 C C29 C7Y . . . C 2 17.818 -16.384 12.752 1 56.02 ? C29 C7Y 601 A 1 HETATM 27 C C30 C7Y . . . C 2 18.853 -15.56 13.523 1 54.17 ? C30 C7Y 601 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 1353 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #