data_6B1U # _model_server_result.job_id VfkoduUFOI3o8M1sXBu1eg _model_server_result.datetime_utc '2025-01-05 02:31:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 6B1U # _exptl.entry_id 6B1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.74 _cell.angle_gamma 90 _cell.entry_id 6B1U _cell.length_a 75.827 _cell.length_b 133.897 _cell.length_c 141.725 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,L,M,P,Q,T 1 1 C,D,F,I,J,K,N,O,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 184 A ARG 171 1_555 A N TPO 185 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale2 A C TPO 185 A TPO 172 1_555 A N SER 186 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale3 B C ARG 107 B ARG 107 1_555 B N SEP 108 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale4 B C SEP 108 B SEP 108 1_555 B N HIS 109 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 C C ARG 184 C ARG 171 1_555 C N TPO 185 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 C C TPO 185 C TPO 172 1_555 C N SER 186 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 D C ARG 107 D ARG 107 1_555 D N SEP 108 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 D C SEP 108 D SEP 108 1_555 D N HIS 109 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6B1U _atom_sites.fract_transf_matrix[1][1] 0.013188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000631 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 STU A 1 601 600 STU STU . H 5 CG7 A 1 602 1 CG7 DRG . I 4 STU C 1 601 600 STU STU . J 5 CG7 C 1 602 2 CG7 DRG . K 6 IMD C 1 603 1 IMD IMD . L 7 AMP E 1 401 351 AMP AMP . M 7 AMP E 1 402 352 AMP AMP . N 7 AMP F 1 401 351 AMP AMP . O 7 AMP F 1 402 352 AMP AMP . P 8 HOH A 1 701 28 HOH HOH . P 8 HOH A 2 702 121 HOH HOH . P 8 HOH A 3 703 30 HOH HOH . P 8 HOH A 4 704 20 HOH HOH . P 8 HOH A 5 705 12 HOH HOH . P 8 HOH A 6 706 11 HOH HOH . P 8 HOH A 7 707 165 HOH HOH . P 8 HOH A 8 708 29 HOH HOH . P 8 HOH A 9 709 166 HOH HOH . P 8 HOH A 10 710 164 HOH HOH . P 8 HOH A 11 711 40 HOH HOH . P 8 HOH A 12 712 35 HOH HOH . P 8 HOH A 13 713 25 HOH HOH . P 8 HOH A 14 714 169 HOH HOH . P 8 HOH A 15 715 8 HOH HOH . P 8 HOH A 16 716 41 HOH HOH . P 8 HOH A 17 717 48 HOH HOH . P 8 HOH A 18 718 27 HOH HOH . P 8 HOH A 19 719 43 HOH HOH . P 8 HOH A 20 720 45 HOH HOH . P 8 HOH A 21 721 37 HOH HOH . P 8 HOH A 22 722 38 HOH HOH . P 8 HOH A 23 723 14 HOH HOH . P 8 HOH A 24 724 136 HOH HOH . P 8 HOH A 25 725 16 HOH HOH . P 8 HOH A 26 726 13 HOH HOH . P 8 HOH A 27 727 44 HOH HOH . P 8 HOH A 28 728 18 HOH HOH . P 8 HOH A 29 729 10 HOH HOH . P 8 HOH A 30 730 42 HOH HOH . P 8 HOH A 31 731 23 HOH HOH . P 8 HOH A 32 732 46 HOH HOH . P 8 HOH A 33 733 39 HOH HOH . P 8 HOH A 34 734 9 HOH HOH . P 8 HOH A 35 735 24 HOH HOH . P 8 HOH A 36 736 36 HOH HOH . P 8 HOH A 37 737 17 HOH HOH . P 8 HOH A 38 738 15 HOH HOH . P 8 HOH A 39 739 22 HOH HOH . P 8 HOH A 40 740 161 HOH HOH . P 8 HOH A 41 741 19 HOH HOH . P 8 HOH A 42 742 26 HOH HOH . P 8 HOH A 43 743 31 HOH HOH . P 8 HOH A 44 744 33 HOH HOH . P 8 HOH A 45 745 167 HOH HOH . P 8 HOH A 46 746 1 HOH HOH . P 8 HOH A 47 747 7 HOH HOH . P 8 HOH A 48 748 47 HOH HOH . Q 8 HOH B 1 301 49 HOH HOH . Q 8 HOH B 2 302 51 HOH HOH . Q 8 HOH B 3 303 159 HOH HOH . Q 8 HOH B 4 304 21 HOH HOH . Q 8 HOH B 5 305 34 HOH HOH . R 8 HOH C 1 701 67 HOH HOH . R 8 HOH C 2 702 84 HOH HOH . R 8 HOH C 3 703 69 HOH HOH . R 8 HOH C 4 704 79 HOH HOH . R 8 HOH C 5 705 57 HOH HOH . R 8 HOH C 6 706 60 HOH HOH . R 8 HOH C 7 707 63 HOH HOH . R 8 HOH C 8 708 55 HOH HOH . R 8 HOH C 9 709 75 HOH HOH . R 8 HOH C 10 710 52 HOH HOH . R 8 HOH C 11 711 62 HOH HOH . R 8 HOH C 12 712 66 HOH HOH . R 8 HOH C 13 713 156 HOH HOH . R 8 HOH C 14 714 100 HOH HOH . R 8 HOH C 15 715 77 HOH HOH . R 8 HOH C 16 716 154 HOH HOH . R 8 HOH C 17 717 68 HOH HOH . R 8 HOH C 18 718 65 HOH HOH . R 8 HOH C 19 719 82 HOH HOH . R 8 HOH C 20 720 160 HOH HOH . R 8 HOH C 21 721 158 HOH HOH . R 8 HOH C 22 722 72 HOH HOH . R 8 HOH C 23 723 73 HOH HOH . R 8 HOH C 24 724 59 HOH HOH . R 8 HOH C 25 725 58 HOH HOH . R 8 HOH C 26 726 101 HOH HOH . R 8 HOH C 27 727 83 HOH HOH . R 8 HOH C 28 728 85 HOH HOH . R 8 HOH C 29 729 61 HOH HOH . R 8 HOH C 30 730 56 HOH HOH . R 8 HOH C 31 731 107 HOH HOH . R 8 HOH C 32 732 74 HOH HOH . R 8 HOH C 33 733 78 HOH HOH . R 8 HOH C 34 734 88 HOH HOH . R 8 HOH C 35 735 76 HOH HOH . R 8 HOH C 36 736 89 HOH HOH . R 8 HOH C 37 737 81 HOH HOH . S 8 HOH D 1 301 111 HOH HOH . S 8 HOH D 2 302 104 HOH HOH . S 8 HOH D 3 303 103 HOH HOH . S 8 HOH D 4 304 113 HOH HOH . S 8 HOH D 5 305 112 HOH HOH . S 8 HOH D 6 306 115 HOH HOH . S 8 HOH D 7 307 71 HOH HOH . S 8 HOH D 8 308 102 HOH HOH . S 8 HOH D 9 309 54 HOH HOH . S 8 HOH D 10 310 162 HOH HOH . S 8 HOH D 11 311 53 HOH HOH . S 8 HOH D 12 312 99 HOH HOH . S 8 HOH D 13 313 106 HOH HOH . S 8 HOH D 14 314 91 HOH HOH . S 8 HOH D 15 315 105 HOH HOH . S 8 HOH D 16 316 163 HOH HOH . S 8 HOH D 17 317 70 HOH HOH . S 8 HOH D 18 318 87 HOH HOH . S 8 HOH D 19 319 32 HOH HOH . S 8 HOH D 20 320 80 HOH HOH . S 8 HOH D 21 321 64 HOH HOH . S 8 HOH D 22 322 168 HOH HOH . T 8 HOH E 1 501 138 HOH HOH . T 8 HOH E 2 502 127 HOH HOH . T 8 HOH E 3 503 145 HOH HOH . T 8 HOH E 4 504 143 HOH HOH . T 8 HOH E 5 505 117 HOH HOH . T 8 HOH E 6 506 142 HOH HOH . T 8 HOH E 7 507 133 HOH HOH . T 8 HOH E 8 508 3 HOH HOH . T 8 HOH E 9 509 5 HOH HOH . T 8 HOH E 10 510 141 HOH HOH . T 8 HOH E 11 511 131 HOH HOH . T 8 HOH E 12 512 123 HOH HOH . T 8 HOH E 13 513 124 HOH HOH . T 8 HOH E 14 514 129 HOH HOH . T 8 HOH E 15 515 120 HOH HOH . T 8 HOH E 16 516 116 HOH HOH . T 8 HOH E 17 517 2 HOH HOH . T 8 HOH E 18 518 126 HOH HOH . T 8 HOH E 19 519 125 HOH HOH . T 8 HOH E 20 520 146 HOH HOH . T 8 HOH E 21 521 135 HOH HOH . T 8 HOH E 22 522 122 HOH HOH . T 8 HOH E 23 523 140 HOH HOH . T 8 HOH E 24 524 130 HOH HOH . T 8 HOH E 25 525 144 HOH HOH . T 8 HOH E 26 526 6 HOH HOH . T 8 HOH E 27 527 50 HOH HOH . T 8 HOH E 28 528 128 HOH HOH . T 8 HOH E 29 529 134 HOH HOH . T 8 HOH E 30 530 118 HOH HOH . T 8 HOH E 31 531 132 HOH HOH . T 8 HOH E 32 532 119 HOH HOH . T 8 HOH E 33 533 139 HOH HOH . T 8 HOH E 34 534 4 HOH HOH . T 8 HOH E 35 535 137 HOH HOH . U 8 HOH F 1 501 108 HOH HOH . U 8 HOH F 2 502 109 HOH HOH . U 8 HOH F 3 503 98 HOH HOH . U 8 HOH F 4 504 90 HOH HOH . U 8 HOH F 5 505 151 HOH HOH . U 8 HOH F 6 506 147 HOH HOH . U 8 HOH F 7 507 148 HOH HOH . U 8 HOH F 8 508 93 HOH HOH . U 8 HOH F 9 509 171 HOH HOH . U 8 HOH F 10 510 152 HOH HOH . U 8 HOH F 11 511 157 HOH HOH . U 8 HOH F 12 512 170 HOH HOH . U 8 HOH F 13 513 92 HOH HOH . U 8 HOH F 14 514 94 HOH HOH . U 8 HOH F 15 515 155 HOH HOH . U 8 HOH F 16 516 95 HOH HOH . U 8 HOH F 17 517 153 HOH HOH . U 8 HOH F 18 518 110 HOH HOH . U 8 HOH F 19 519 149 HOH HOH . U 8 HOH F 20 520 150 HOH HOH . U 8 HOH F 21 521 96 HOH HOH . U 8 HOH F 22 522 114 HOH HOH . U 8 HOH F 23 523 97 HOH HOH . U 8 HOH F 24 524 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . L 7 32.047 82.155 -34.218 1 51.48 ? P AMP 401 E 1 HETATM 2 O O1P AMP . . . L 7 33.481 82.103 -34.693 1 50.64 ? O1P AMP 401 E 1 HETATM 3 O O2P AMP . . . L 7 31.518 80.81 -33.791 1 51.54 ? O2P AMP 401 E 1 HETATM 4 O O3P AMP . . . L 7 31.749 83.266 -33.238 1 52.75 ? O3P AMP 401 E 1 HETATM 5 O O5' AMP . . . L 7 31.216 82.53 -35.551 1 50.5 ? O5' AMP 401 E 1 HETATM 6 C C5' AMP . . . L 7 29.786 82.563 -35.621 1 49.48 ? C5' AMP 401 E 1 HETATM 7 C C4' AMP . . . L 7 29.272 83.74 -36.465 1 50.58 ? C4' AMP 401 E 1 HETATM 8 O O4' AMP . . . L 7 29.147 84.919 -35.663 1 51.13 ? O4' AMP 401 E 1 HETATM 9 C C3' AMP . . . L 7 30.124 84.104 -37.683 1 51.07 ? C3' AMP 401 E 1 HETATM 10 O O3' AMP . . . L 7 29.262 84.242 -38.821 1 51.73 ? O3' AMP 401 E 1 HETATM 11 C C2' AMP . . . L 7 30.747 85.448 -37.331 1 52.21 ? C2' AMP 401 E 1 HETATM 12 O O2' AMP . . . L 7 30.844 86.337 -38.451 1 54.13 ? O2' AMP 401 E 1 HETATM 13 C C1' AMP . . . L 7 29.845 86.023 -36.248 1 52.22 ? C1' AMP 401 E 1 HETATM 14 N N9 AMP . . . L 7 30.639 86.712 -35.2 1 53.24 ? N9 AMP 401 E 1 HETATM 15 C C8 AMP . . . L 7 31.593 86.149 -34.433 1 52.53 ? C8 AMP 401 E 1 HETATM 16 N N7 AMP . . . L 7 32.114 87.027 -33.545 1 53.49 ? N7 AMP 401 E 1 HETATM 17 C C5 AMP . . . L 7 31.467 88.192 -33.724 1 55.4 ? C5 AMP 401 E 1 HETATM 18 C C6 AMP . . . L 7 31.533 89.556 -33.139 1 57.18 ? C6 AMP 401 E 1 HETATM 19 N N6 AMP . . . L 7 32.394 89.845 -32.135 1 57.94 ? N6 AMP 401 E 1 HETATM 20 N N1 AMP . . . L 7 30.7 90.5 -33.642 1 58.19 ? N1 AMP 401 E 1 HETATM 21 C C2 AMP . . . L 7 29.821 90.242 -34.636 1 57.51 ? C2 AMP 401 E 1 HETATM 22 N N3 AMP . . . L 7 29.721 89.033 -35.227 1 56.12 ? N3 AMP 401 E 1 HETATM 23 C C4 AMP . . . L 7 30.494 87.985 -34.82 1 55.14 ? C4 AMP 401 E 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 544 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #