data_6B2B # _model_server_result.job_id RyuLAd9fDVeiJQiHlnl6qA _model_server_result.datetime_utc '2024-11-04 22:35:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6B2B # _exptl.entry_id 6B2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B2B _cell.length_a 86.986 _cell.length_b 86.986 _cell.length_c 141.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 75 A GLY 75 1_555 I NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A O SER 78 A SER 78 1_555 I NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 I NA NA . A NA 205 1_555 B O GLY 75 B GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 I NA NA . A NA 205 1_555 B O SER 78 B SER 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 83 n n C40 C43 DMU sing 84 n n C37 C34 DMU sing 85 n n C34 C31 DMU sing 86 n n C31 C28 DMU sing 87 n n C28 C25 DMU sing 88 n n C22 C25 DMU sing 89 n n C22 C19 DMU sing 90 n n O61 C57 DMU sing 91 n n O4 C7 DMU sing 92 n n C18 C19 DMU sing 93 n n C18 O16 DMU sing 94 n n O5 C6 DMU sing 95 n n O5 C4 DMU sing 96 n n C57 C4 DMU sing 97 n n C6 O16 DMU sing 98 n n C6 C1 DMU sing 99 n n C7 C5 DMU sing 100 n n C7 C8 DMU sing 101 n n C4 C3 DMU sing 102 n n O1 C10 DMU sing 103 n n O1 C9 DMU sing 104 n n C10 C5 DMU sing 105 n n C10 O7 DMU sing 106 n n C5 O3 DMU sing 107 n n O49 C1 DMU sing 108 n n C8 C9 DMU sing 109 n n C8 O2 DMU sing 110 n n C1 C2 DMU sing 111 n n C11 C9 DMU sing 112 n n C11 O6 DMU sing 113 n n C3 O7 DMU sing 114 n n C3 C2 DMU sing 115 n n C2 O55 DMU sing 116 n n C1 H1 DMU sing 117 n n C2 H2 DMU sing 118 n n C3 H3 DMU sing 119 n n C4 H4 DMU sing 120 n n C6 H5 DMU sing 121 n n C18 H6 DMU sing 122 n n C18 H7 DMU sing 123 n n C19 H8 DMU sing 124 n n C19 H9 DMU sing 125 n n C22 H10 DMU sing 126 n n C22 H11 DMU sing 127 n n C25 H12 DMU sing 128 n n C25 H13 DMU sing 129 n n C28 H14 DMU sing 130 n n C28 H15 DMU sing 131 n n C31 H16 DMU sing 132 n n C31 H17 DMU sing 133 n n C34 H18 DMU sing 134 n n C34 H19 DMU sing 135 n n C37 H20 DMU sing 136 n n C37 H21 DMU sing 137 n n C40 H22 DMU sing 138 n n C40 H23 DMU sing 139 n n C43 H24 DMU sing 140 n n C43 H25 DMU sing 141 n n C43 H26 DMU sing 142 n n O49 H27 DMU sing 143 n n O55 H28 DMU sing 144 n n C57 H29 DMU sing 145 n n C57 H30 DMU sing 146 n n O61 H31 DMU sing 147 n n C5 H32 DMU sing 148 n n C7 H33 DMU sing 149 n n C8 H34 DMU sing 150 n n C9 H35 DMU sing 151 n n C10 H36 DMU sing 152 n n O2 H37 DMU sing 153 n n O3 H38 DMU sing 154 n n O4 H39 DMU sing 155 n n C11 H40 DMU sing 156 n n C11 H41 DMU sing 157 n n O6 H42 DMU sing 158 n n # _atom_sites.entry_id 6B2B _atom_sites.fract_transf_matrix[1][1] 0.011496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DMU A 1 201 2 DMU DMU . F 3 DMU A 1 202 3 DMU DMU . G 4 F A 1 203 1 F F . H 4 F A 1 204 2 F F . I 5 NA A 1 205 1 NA NA . J 3 DMU B 1 201 1 DMU DMU . K 4 F B 1 202 3 F F . L 6 HOH A 1 301 9 HOH HOH . L 6 HOH A 2 302 7 HOH HOH . L 6 HOH A 3 303 3 HOH HOH . M 6 HOH B 1 301 4 HOH HOH . M 6 HOH B 2 302 14 HOH HOH . M 6 HOH B 3 303 1 HOH HOH . M 6 HOH B 4 304 2 HOH HOH . M 6 HOH B 5 305 6 HOH HOH . M 6 HOH B 6 306 11 HOH HOH . M 6 HOH B 7 307 12 HOH HOH . N 6 HOH C 1 101 10 HOH HOH . N 6 HOH C 2 102 5 HOH HOH . N 6 HOH C 3 103 15 HOH HOH . O 6 HOH D 1 101 13 HOH HOH . O 6 HOH D 2 102 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . E 3 24.047 84.761 1.897 1 95.48 ? C1 DMU 201 A 1 HETATM 2 C C2 DMU . . . E 3 23.148 85.446 0.873 1 96.01 ? C2 DMU 201 A 1 HETATM 3 C C3 DMU . . . E 3 23.67 86.843 0.559 1 96.81 ? C3 DMU 201 A 1 HETATM 4 C C4 DMU . . . E 3 25.143 86.785 0.169 1 95 ? C4 DMU 201 A 1 HETATM 5 O O5 DMU . . . E 3 25.898 86.136 1.205 1 93.48 ? O5 DMU 201 A 1 HETATM 6 C C6 DMU . . . E 3 25.497 84.798 1.432 1 94.48 ? C6 DMU 201 A 1 HETATM 7 O O7 DMU . . . E 3 22.924 87.383 -0.545 1 98.98 ? O7 DMU 201 A 1 HETATM 8 O O16 DMU . . . E 3 26.282 84.23 2.442 1 97.24 ? O16 DMU 201 A 1 HETATM 9 C C18 DMU . . . E 3 27.576 83.785 2.02 1 97.54 ? C18 DMU 201 A 1 HETATM 10 C C19 DMU . . . E 3 28.6 84.864 2.279 1 95.34 ? C19 DMU 201 A 1 HETATM 11 C C22 DMU . . . E 3 29.728 84.417 3.193 1 96.06 ? C22 DMU 201 A 1 HETATM 12 C C25 DMU . . . E 3 30.717 83.46 2.549 1 94.64 ? C25 DMU 201 A 1 HETATM 13 C C28 DMU . . . E 3 31.916 83.151 3.43 1 95.23 ? C28 DMU 201 A 1 HETATM 14 C C31 DMU . . . E 3 32.96 82.259 2.777 1 96.83 ? C31 DMU 201 A 1 HETATM 15 C C34 DMU . . . E 3 34.382 82.523 3.248 1 98.39 ? C34 DMU 201 A 1 HETATM 16 C C37 DMU . . . E 3 35.026 83.742 2.607 1 100.86 ? C37 DMU 201 A 1 HETATM 17 C C40 DMU . . . E 3 36.508 83.902 2.903 1 101.32 ? C40 DMU 201 A 1 HETATM 18 C C43 DMU . . . E 3 37.104 85.154 2.292 1 101.76 ? C43 DMU 201 A 1 HETATM 19 O O49 DMU . . . E 3 23.638 83.411 2.087 1 95 ? O49 DMU 201 A 1 HETATM 20 O O55 DMU . . . E 3 21.821 85.513 1.382 1 96.15 ? O55 DMU 201 A 1 HETATM 21 C C57 DMU . . . E 3 25.777 88.14 -0.042 1 93.69 ? C57 DMU 201 A 1 HETATM 22 O O61 DMU . . . E 3 25.639 88.974 1.099 1 92.42 ? O61 DMU 201 A 1 HETATM 23 C C5 DMU . . . E 3 20.605 87.634 -1.062 1 101.51 ? C5 DMU 201 A 1 HETATM 24 C C7 DMU . . . E 3 20.825 87.86 -2.551 1 102.14 ? C7 DMU 201 A 1 HETATM 25 C C8 DMU . . . E 3 21.092 89.334 -2.826 1 102.07 ? C8 DMU 201 A 1 HETATM 26 C C9 DMU . . . E 3 22.262 89.824 -1.976 1 101.93 ? C9 DMU 201 A 1 HETATM 27 O O1 DMU . . . E 3 22.022 89.542 -0.583 1 101.25 ? O1 DMU 201 A 1 HETATM 28 C C10 DMU . . . E 3 21.79 88.176 -0.267 1 101.35 ? C10 DMU 201 A 1 HETATM 29 O O2 DMU . . . E 3 21.396 89.517 -4.204 1 101.9 ? O2 DMU 201 A 1 HETATM 30 O O3 DMU . . . E 3 20.424 86.247 -0.8 1 100.68 ? O3 DMU 201 A 1 HETATM 31 O O4 DMU . . . E 3 19.686 87.425 -3.285 1 103.13 ? O4 DMU 201 A 1 HETATM 32 C C11 DMU . . . E 3 22.484 91.317 -2.085 1 102.29 ? C11 DMU 201 A 1 HETATM 33 O O6 DMU . . . E 3 23.864 91.648 -2.011 1 104.88 ? O6 DMU 201 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #