data_6B2L # _model_server_result.job_id IfrxjR4zD_ZLZOR3R9wyPA _model_server_result.datetime_utc '2024-11-22 18:42:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 6B2L # _exptl.entry_id 6B2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 98.146 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PIPERIDIN-2-IMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B2L _cell.length_a 99.74 _cell.length_b 99.74 _cell.length_c 99.74 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -49.87 49.87 99.74 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 49.87 99.74 49.87 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 32 A ILE 32 1_555 A N CME 33 A CME 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C CME 33 A CME 33 1_555 A N GLY 34 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C5 H10 N2' _chem_comp.formula_weight 98.146 _chem_comp.id 2IM _chem_comp.mon_nstd_flag . _chem_comp.name PIPERIDIN-2-IMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 2IM doub 1 n n N2 HN2 2IM sing 2 n n C1 N1 2IM sing 3 n n C1 C2 2IM sing 4 n n N1 C4 2IM sing 5 n n N1 HN1 2IM sing 6 n n C4 C5 2IM sing 7 n n C4 H41 2IM sing 8 n n C4 H42 2IM sing 9 n n C5 C3 2IM sing 10 n n C5 H51 2IM sing 11 n n C5 H52 2IM sing 12 n n C3 C2 2IM sing 13 n n C3 H31 2IM sing 14 n n C3 H32 2IM sing 15 n n C2 H21 2IM sing 16 n n C2 H22 2IM sing 17 n n # _atom_sites.entry_id 6B2L _atom_sites.fract_transf_matrix[1][1] 0.010026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 2 DMS A 1 302 2 DMS DMS . D 2 DMS A 1 303 3 DMS DMS . E 2 DMS A 1 304 4 DMS DMS . F 2 DMS A 1 305 5 DMS DMS . G 2 DMS A 1 306 9 DMS DMS . H 2 DMS A 1 307 10 DMS DMS . I 3 2IM A 1 308 1 2IM FRG . J 4 HOH A 1 401 13 HOH HOH . J 4 HOH A 2 402 114 HOH HOH . J 4 HOH A 3 403 126 HOH HOH . J 4 HOH A 4 404 122 HOH HOH . J 4 HOH A 5 405 42 HOH HOH . J 4 HOH A 6 406 89 HOH HOH . J 4 HOH A 7 407 116 HOH HOH . J 4 HOH A 8 408 69 HOH HOH . J 4 HOH A 9 409 110 HOH HOH . J 4 HOH A 10 410 148 HOH HOH . J 4 HOH A 11 411 17 HOH HOH . J 4 HOH A 12 412 68 HOH HOH . J 4 HOH A 13 413 128 HOH HOH . J 4 HOH A 14 414 174 HOH HOH . J 4 HOH A 15 415 156 HOH HOH . J 4 HOH A 16 416 29 HOH HOH . J 4 HOH A 17 417 162 HOH HOH . J 4 HOH A 18 418 20 HOH HOH . J 4 HOH A 19 419 121 HOH HOH . J 4 HOH A 20 420 6 HOH HOH . J 4 HOH A 21 421 61 HOH HOH . J 4 HOH A 22 422 55 HOH HOH . J 4 HOH A 23 423 95 HOH HOH . J 4 HOH A 24 424 167 HOH HOH . J 4 HOH A 25 425 56 HOH HOH . J 4 HOH A 26 426 41 HOH HOH . J 4 HOH A 27 427 99 HOH HOH . J 4 HOH A 28 428 43 HOH HOH . J 4 HOH A 29 429 27 HOH HOH . J 4 HOH A 30 430 2 HOH HOH . J 4 HOH A 31 431 58 HOH HOH . J 4 HOH A 32 432 153 HOH HOH . J 4 HOH A 33 433 11 HOH HOH . J 4 HOH A 34 434 152 HOH HOH . J 4 HOH A 35 435 183 HOH HOH . J 4 HOH A 36 436 139 HOH HOH . J 4 HOH A 37 437 49 HOH HOH . J 4 HOH A 38 438 14 HOH HOH . J 4 HOH A 39 439 4 HOH HOH . J 4 HOH A 40 440 47 HOH HOH . J 4 HOH A 41 441 54 HOH HOH . J 4 HOH A 42 442 97 HOH HOH . J 4 HOH A 43 443 25 HOH HOH . J 4 HOH A 44 444 1 HOH HOH . J 4 HOH A 45 445 72 HOH HOH . J 4 HOH A 46 446 7 HOH HOH . J 4 HOH A 47 447 53 HOH HOH . J 4 HOH A 48 448 108 HOH HOH . J 4 HOH A 49 449 67 HOH HOH . J 4 HOH A 50 450 86 HOH HOH . J 4 HOH A 51 451 18 HOH HOH . J 4 HOH A 52 452 105 HOH HOH . J 4 HOH A 53 453 85 HOH HOH . J 4 HOH A 54 454 3 HOH HOH . J 4 HOH A 55 455 82 HOH HOH . J 4 HOH A 56 456 137 HOH HOH . J 4 HOH A 57 457 28 HOH HOH . J 4 HOH A 58 458 46 HOH HOH . J 4 HOH A 59 459 26 HOH HOH . J 4 HOH A 60 460 132 HOH HOH . J 4 HOH A 61 461 57 HOH HOH . J 4 HOH A 62 462 93 HOH HOH . J 4 HOH A 63 463 64 HOH HOH . J 4 HOH A 64 464 196 HOH HOH . J 4 HOH A 65 465 104 HOH HOH . J 4 HOH A 66 466 36 HOH HOH . J 4 HOH A 67 467 63 HOH HOH . J 4 HOH A 68 468 186 HOH HOH . J 4 HOH A 69 469 59 HOH HOH . J 4 HOH A 70 470 77 HOH HOH . J 4 HOH A 71 471 19 HOH HOH . J 4 HOH A 72 472 87 HOH HOH . J 4 HOH A 73 473 191 HOH HOH . J 4 HOH A 74 474 16 HOH HOH . J 4 HOH A 75 475 5 HOH HOH . J 4 HOH A 76 476 9 HOH HOH . J 4 HOH A 77 477 40 HOH HOH . J 4 HOH A 78 478 34 HOH HOH . J 4 HOH A 79 479 144 HOH HOH . J 4 HOH A 80 480 71 HOH HOH . J 4 HOH A 81 481 38 HOH HOH . J 4 HOH A 82 482 76 HOH HOH . J 4 HOH A 83 483 65 HOH HOH . J 4 HOH A 84 484 101 HOH HOH . J 4 HOH A 85 485 145 HOH HOH . J 4 HOH A 86 486 120 HOH HOH . J 4 HOH A 87 487 44 HOH HOH . J 4 HOH A 88 488 130 HOH HOH . J 4 HOH A 89 489 74 HOH HOH . J 4 HOH A 90 490 88 HOH HOH . J 4 HOH A 91 491 21 HOH HOH . J 4 HOH A 92 492 212 HOH HOH . J 4 HOH A 93 493 8 HOH HOH . J 4 HOH A 94 494 118 HOH HOH . J 4 HOH A 95 495 142 HOH HOH . J 4 HOH A 96 496 48 HOH HOH . J 4 HOH A 97 497 73 HOH HOH . J 4 HOH A 98 498 45 HOH HOH . J 4 HOH A 99 499 22 HOH HOH . J 4 HOH A 100 500 23 HOH HOH . J 4 HOH A 101 501 66 HOH HOH . J 4 HOH A 102 502 24 HOH HOH . J 4 HOH A 103 503 92 HOH HOH . J 4 HOH A 104 504 35 HOH HOH . J 4 HOH A 105 505 123 HOH HOH . J 4 HOH A 106 506 226 HOH HOH . J 4 HOH A 107 507 127 HOH HOH . J 4 HOH A 108 508 10 HOH HOH . J 4 HOH A 109 509 51 HOH HOH . J 4 HOH A 110 510 12 HOH HOH . J 4 HOH A 111 511 250 HOH HOH . J 4 HOH A 112 512 62 HOH HOH . J 4 HOH A 113 513 31 HOH HOH . J 4 HOH A 114 514 180 HOH HOH . J 4 HOH A 115 515 213 HOH HOH . J 4 HOH A 116 516 249 HOH HOH . J 4 HOH A 117 517 70 HOH HOH . J 4 HOH A 118 518 103 HOH HOH . J 4 HOH A 119 519 37 HOH HOH . J 4 HOH A 120 520 218 HOH HOH . J 4 HOH A 121 521 225 HOH HOH . J 4 HOH A 122 522 39 HOH HOH . J 4 HOH A 123 523 141 HOH HOH . J 4 HOH A 124 524 15 HOH HOH . J 4 HOH A 125 525 172 HOH HOH . J 4 HOH A 126 526 129 HOH HOH . J 4 HOH A 127 527 30 HOH HOH . J 4 HOH A 128 528 90 HOH HOH . J 4 HOH A 129 529 143 HOH HOH . J 4 HOH A 130 530 79 HOH HOH . J 4 HOH A 131 531 32 HOH HOH . J 4 HOH A 132 532 102 HOH HOH . J 4 HOH A 133 533 164 HOH HOH . J 4 HOH A 134 534 91 HOH HOH . J 4 HOH A 135 535 149 HOH HOH . J 4 HOH A 136 536 219 HOH HOH . J 4 HOH A 137 537 107 HOH HOH . J 4 HOH A 138 538 257 HOH HOH . J 4 HOH A 139 539 258 HOH HOH . J 4 HOH A 140 540 216 HOH HOH . J 4 HOH A 141 541 124 HOH HOH . J 4 HOH A 142 542 100 HOH HOH . J 4 HOH A 143 543 169 HOH HOH . J 4 HOH A 144 544 133 HOH HOH . J 4 HOH A 145 545 140 HOH HOH . J 4 HOH A 146 546 75 HOH HOH . J 4 HOH A 147 547 154 HOH HOH . J 4 HOH A 148 548 165 HOH HOH . J 4 HOH A 149 549 125 HOH HOH . J 4 HOH A 150 550 210 HOH HOH . J 4 HOH A 151 551 217 HOH HOH . J 4 HOH A 152 552 255 HOH HOH . J 4 HOH A 153 553 112 HOH HOH . J 4 HOH A 154 554 184 HOH HOH . J 4 HOH A 155 555 94 HOH HOH . J 4 HOH A 156 556 33 HOH HOH . J 4 HOH A 157 557 161 HOH HOH . J 4 HOH A 158 558 189 HOH HOH . J 4 HOH A 159 559 203 HOH HOH . J 4 HOH A 160 560 136 HOH HOH . J 4 HOH A 161 561 98 HOH HOH . J 4 HOH A 162 562 111 HOH HOH . J 4 HOH A 163 563 96 HOH HOH . J 4 HOH A 164 564 256 HOH HOH . J 4 HOH A 165 565 135 HOH HOH . J 4 HOH A 166 566 113 HOH HOH . J 4 HOH A 167 567 117 HOH HOH . J 4 HOH A 168 568 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 2IM . B . I 3 -4.609 28.693 54.562 0.97 26.33 ? N2 2IM 308 A 1 HETATM 2 C C1 2IM . B . I 3 -3.636 27.91 54.527 0.97 28.62 ? C1 2IM 308 A 1 HETATM 3 N N1 2IM . B . I 3 -2.344 28.391 54.903 0.97 23.26 ? N1 2IM 308 A 1 HETATM 4 C C4 2IM . B . I 3 -1.139 27.594 54.86 0.97 23.7 ? C4 2IM 308 A 1 HETATM 5 C C5 2IM . B . I 3 -1.381 26.097 54.669 0.97 31.79 ? C5 2IM 308 A 1 HETATM 6 C C3 2IM . B . I 3 -2.509 25.804 53.71 0.97 30.52 ? C3 2IM 308 A 1 HETATM 7 C C2 2IM . B . I 3 -3.815 26.461 54.092 0.97 25.94 ? C2 2IM 308 A 1 HETATM 8 H HN2 2IM . B . I 3 -4.497 29.506 54.82 0.97 31.6 ? HN2 2IM 308 A 1 HETATM 9 H HN1 2IM . B . I 3 -2.272 29.218 55.129 0.97 27.91 ? HN1 2IM 308 A 1 HETATM 10 H H41 2IM . B . I 3 -0.588 27.911 54.126 0.97 28.44 ? H41 2IM 308 A 1 HETATM 11 H H42 2IM . B . I 3 -0.656 27.723 55.691 0.97 28.44 ? H42 2IM 308 A 1 HETATM 12 H H51 2IM . B . I 3 -1.595 25.705 55.53 0.97 38.15 ? H51 2IM 308 A 1 HETATM 13 H H52 2IM . B . I 3 -0.569 25.691 54.328 0.97 38.15 ? H52 2IM 308 A 1 HETATM 14 H H31 2IM . B . I 3 -2.645 24.844 53.678 0.97 36.62 ? H31 2IM 308 A 1 HETATM 15 H H32 2IM . B . I 3 -2.253 26.116 52.828 0.97 36.62 ? H32 2IM 308 A 1 HETATM 16 H H21 2IM . B . I 3 -4.412 26.436 53.328 0.97 31.12 ? H21 2IM 308 A 1 HETATM 17 H H22 2IM . B . I 3 -4.213 25.963 54.823 0.97 31.12 ? H22 2IM 308 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #