data_6B2R # _model_server_result.job_id gAY2b7gOms5skzfQfQgV8w _model_server_result.datetime_utc '2024-11-14 20:12:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6B2R # _exptl.entry_id 6B2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B2R _cell.length_a 82.176 _cell.length_b 85.609 _cell.length_c 103 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ALA 142 B ALA 142 1_555 B N CSO 143 B CSO 143 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.347 ? covale ? covale2 B C ALA 142 B ALA 142 1_555 B N CSO 143 B CSO 143 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.346 ? covale ? covale3 B C CSO 143 B CSO 143 1_555 B N LEU 144 B LEU 144 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale4 B C CSO 143 B CSO 143 1_555 B N LEU 144 B LEU 144 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 6B2R _atom_sites.fract_transf_matrix[1][1] 0.012169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 2 GOL GOL . D 3 GOL B 1 401 1 GOL GOL . E 4 HOH A 1 501 259 HOH HOH . E 4 HOH A 2 502 215 HOH HOH . E 4 HOH A 3 503 239 HOH HOH . E 4 HOH A 4 504 124 HOH HOH . E 4 HOH A 5 505 178 HOH HOH . E 4 HOH A 6 506 107 HOH HOH . E 4 HOH A 7 507 166 HOH HOH . E 4 HOH A 8 508 120 HOH HOH . E 4 HOH A 9 509 183 HOH HOH . E 4 HOH A 10 510 207 HOH HOH . E 4 HOH A 11 511 196 HOH HOH . E 4 HOH A 12 512 261 HOH HOH . E 4 HOH A 13 513 204 HOH HOH . E 4 HOH A 14 514 88 HOH HOH . E 4 HOH A 15 515 19 HOH HOH . E 4 HOH A 16 516 189 HOH HOH . E 4 HOH A 17 517 161 HOH HOH . E 4 HOH A 18 518 168 HOH HOH . E 4 HOH A 19 519 43 HOH HOH . E 4 HOH A 20 520 132 HOH HOH . E 4 HOH A 21 521 32 HOH HOH . E 4 HOH A 22 522 135 HOH HOH . E 4 HOH A 23 523 6 HOH HOH . E 4 HOH A 24 524 130 HOH HOH . E 4 HOH A 25 525 98 HOH HOH . E 4 HOH A 26 526 25 HOH HOH . E 4 HOH A 27 527 181 HOH HOH . E 4 HOH A 28 528 97 HOH HOH . E 4 HOH A 29 529 233 HOH HOH . E 4 HOH A 30 530 26 HOH HOH . E 4 HOH A 31 531 228 HOH HOH . E 4 HOH A 32 532 241 HOH HOH . E 4 HOH A 33 533 217 HOH HOH . E 4 HOH A 34 534 237 HOH HOH . E 4 HOH A 35 535 150 HOH HOH . E 4 HOH A 36 536 213 HOH HOH . E 4 HOH A 37 537 142 HOH HOH . E 4 HOH A 38 538 37 HOH HOH . E 4 HOH A 39 539 56 HOH HOH . E 4 HOH A 40 540 138 HOH HOH . E 4 HOH A 41 541 208 HOH HOH . E 4 HOH A 42 542 8 HOH HOH . E 4 HOH A 43 543 200 HOH HOH . E 4 HOH A 44 544 66 HOH HOH . E 4 HOH A 45 545 102 HOH HOH . E 4 HOH A 46 546 242 HOH HOH . E 4 HOH A 47 547 15 HOH HOH . E 4 HOH A 48 548 159 HOH HOH . E 4 HOH A 49 549 216 HOH HOH . E 4 HOH A 50 550 67 HOH HOH . E 4 HOH A 51 551 68 HOH HOH . E 4 HOH A 52 552 230 HOH HOH . E 4 HOH A 53 553 203 HOH HOH . E 4 HOH A 54 554 35 HOH HOH . E 4 HOH A 55 555 164 HOH HOH . E 4 HOH A 56 556 109 HOH HOH . E 4 HOH A 57 557 39 HOH HOH . E 4 HOH A 58 558 163 HOH HOH . E 4 HOH A 59 559 140 HOH HOH . E 4 HOH A 60 560 38 HOH HOH . E 4 HOH A 61 561 81 HOH HOH . E 4 HOH A 62 562 64 HOH HOH . E 4 HOH A 63 563 247 HOH HOH . E 4 HOH A 64 564 220 HOH HOH . E 4 HOH A 65 565 94 HOH HOH . E 4 HOH A 66 566 190 HOH HOH . E 4 HOH A 67 567 160 HOH HOH . E 4 HOH A 68 568 248 HOH HOH . E 4 HOH A 69 569 129 HOH HOH . E 4 HOH A 70 570 226 HOH HOH . E 4 HOH A 71 571 131 HOH HOH . E 4 HOH A 72 572 192 HOH HOH . E 4 HOH A 73 573 9 HOH HOH . E 4 HOH A 74 574 70 HOH HOH . E 4 HOH A 75 575 30 HOH HOH . E 4 HOH A 76 576 41 HOH HOH . E 4 HOH A 77 577 221 HOH HOH . E 4 HOH A 78 578 34 HOH HOH . E 4 HOH A 79 579 106 HOH HOH . E 4 HOH A 80 580 11 HOH HOH . E 4 HOH A 81 581 50 HOH HOH . E 4 HOH A 82 582 69 HOH HOH . E 4 HOH A 83 583 175 HOH HOH . E 4 HOH A 84 584 22 HOH HOH . E 4 HOH A 85 585 101 HOH HOH . E 4 HOH A 86 586 245 HOH HOH . E 4 HOH A 87 587 53 HOH HOH . E 4 HOH A 88 588 187 HOH HOH . E 4 HOH A 89 589 112 HOH HOH . E 4 HOH A 90 590 165 HOH HOH . E 4 HOH A 91 591 184 HOH HOH . E 4 HOH A 92 592 201 HOH HOH . E 4 HOH A 93 593 179 HOH HOH . E 4 HOH A 94 594 134 HOH HOH . E 4 HOH A 95 595 49 HOH HOH . E 4 HOH A 96 596 158 HOH HOH . E 4 HOH A 97 597 258 HOH HOH . E 4 HOH A 98 598 86 HOH HOH . E 4 HOH A 99 599 12 HOH HOH . E 4 HOH A 100 600 205 HOH HOH . E 4 HOH A 101 601 23 HOH HOH . E 4 HOH A 102 602 84 HOH HOH . E 4 HOH A 103 603 198 HOH HOH . E 4 HOH A 104 604 27 HOH HOH . E 4 HOH A 105 605 227 HOH HOH . E 4 HOH A 106 606 31 HOH HOH . E 4 HOH A 107 607 176 HOH HOH . E 4 HOH A 108 608 47 HOH HOH . E 4 HOH A 109 609 212 HOH HOH . E 4 HOH A 110 610 182 HOH HOH . E 4 HOH A 111 611 263 HOH HOH . E 4 HOH A 112 612 214 HOH HOH . E 4 HOH A 113 613 92 HOH HOH . E 4 HOH A 114 614 16 HOH HOH . E 4 HOH A 115 615 104 HOH HOH . E 4 HOH A 116 616 188 HOH HOH . E 4 HOH A 117 617 118 HOH HOH . E 4 HOH A 118 618 117 HOH HOH . E 4 HOH A 119 619 60 HOH HOH . E 4 HOH A 120 620 116 HOH HOH . E 4 HOH A 121 621 143 HOH HOH . E 4 HOH A 122 622 125 HOH HOH . E 4 HOH A 123 623 28 HOH HOH . E 4 HOH A 124 624 5 HOH HOH . E 4 HOH A 125 625 52 HOH HOH . E 4 HOH A 126 626 234 HOH HOH . E 4 HOH A 127 627 127 HOH HOH . E 4 HOH A 128 628 137 HOH HOH . E 4 HOH A 129 629 128 HOH HOH . E 4 HOH A 130 630 82 HOH HOH . E 4 HOH A 131 631 80 HOH HOH . E 4 HOH A 132 632 249 HOH HOH . E 4 HOH A 133 633 194 HOH HOH . E 4 HOH A 134 634 156 HOH HOH . E 4 HOH A 135 635 100 HOH HOH . E 4 HOH A 136 636 154 HOH HOH . E 4 HOH A 137 637 170 HOH HOH . E 4 HOH A 138 638 257 HOH HOH . E 4 HOH A 139 639 133 HOH HOH . E 4 HOH A 140 640 232 HOH HOH . E 4 HOH A 141 641 169 HOH HOH . E 4 HOH A 142 642 177 HOH HOH . E 4 HOH A 143 643 173 HOH HOH . E 4 HOH A 144 644 256 HOH HOH . E 4 HOH A 145 645 252 HOH HOH . E 4 HOH A 146 646 141 HOH HOH . E 4 HOH A 147 647 136 HOH HOH . E 4 HOH A 148 648 152 HOH HOH . E 4 HOH A 149 649 162 HOH HOH . E 4 HOH A 150 650 246 HOH HOH . E 4 HOH A 151 651 231 HOH HOH . E 4 HOH A 152 652 243 HOH HOH . F 4 HOH B 1 501 139 HOH HOH . F 4 HOH B 2 502 121 HOH HOH . F 4 HOH B 3 503 224 HOH HOH . F 4 HOH B 4 504 206 HOH HOH . F 4 HOH B 5 505 108 HOH HOH . F 4 HOH B 6 506 225 HOH HOH . F 4 HOH B 7 507 29 HOH HOH . F 4 HOH B 8 508 122 HOH HOH . F 4 HOH B 9 509 114 HOH HOH . F 4 HOH B 10 510 89 HOH HOH . F 4 HOH B 11 511 146 HOH HOH . F 4 HOH B 12 512 236 HOH HOH . F 4 HOH B 13 513 111 HOH HOH . F 4 HOH B 14 514 219 HOH HOH . F 4 HOH B 15 515 186 HOH HOH . F 4 HOH B 16 516 75 HOH HOH . F 4 HOH B 17 517 54 HOH HOH . F 4 HOH B 18 518 172 HOH HOH . F 4 HOH B 19 519 255 HOH HOH . F 4 HOH B 20 520 105 HOH HOH . F 4 HOH B 21 521 87 HOH HOH . F 4 HOH B 22 522 51 HOH HOH . F 4 HOH B 23 523 33 HOH HOH . F 4 HOH B 24 524 149 HOH HOH . F 4 HOH B 25 525 79 HOH HOH . F 4 HOH B 26 526 48 HOH HOH . F 4 HOH B 27 527 93 HOH HOH . F 4 HOH B 28 528 199 HOH HOH . F 4 HOH B 29 529 91 HOH HOH . F 4 HOH B 30 530 73 HOH HOH . F 4 HOH B 31 531 260 HOH HOH . F 4 HOH B 32 532 145 HOH HOH . F 4 HOH B 33 533 10 HOH HOH . F 4 HOH B 34 534 24 HOH HOH . F 4 HOH B 35 535 264 HOH HOH . F 4 HOH B 36 536 62 HOH HOH . F 4 HOH B 37 537 191 HOH HOH . F 4 HOH B 38 538 147 HOH HOH . F 4 HOH B 39 539 55 HOH HOH . F 4 HOH B 40 540 238 HOH HOH . F 4 HOH B 41 541 21 HOH HOH . F 4 HOH B 42 542 59 HOH HOH . F 4 HOH B 43 543 95 HOH HOH . F 4 HOH B 44 544 18 HOH HOH . F 4 HOH B 45 545 74 HOH HOH . F 4 HOH B 46 546 76 HOH HOH . F 4 HOH B 47 547 123 HOH HOH . F 4 HOH B 48 548 13 HOH HOH . F 4 HOH B 49 549 14 HOH HOH . F 4 HOH B 50 550 85 HOH HOH . F 4 HOH B 51 551 71 HOH HOH . F 4 HOH B 52 552 195 HOH HOH . F 4 HOH B 53 553 180 HOH HOH . F 4 HOH B 54 554 42 HOH HOH . F 4 HOH B 55 555 90 HOH HOH . F 4 HOH B 56 556 210 HOH HOH . F 4 HOH B 57 557 151 HOH HOH . F 4 HOH B 58 558 3 HOH HOH . F 4 HOH B 59 559 72 HOH HOH . F 4 HOH B 60 560 193 HOH HOH . F 4 HOH B 61 561 57 HOH HOH . F 4 HOH B 62 562 40 HOH HOH . F 4 HOH B 63 563 58 HOH HOH . F 4 HOH B 64 564 197 HOH HOH . F 4 HOH B 65 565 46 HOH HOH . F 4 HOH B 66 566 45 HOH HOH . F 4 HOH B 67 567 119 HOH HOH . F 4 HOH B 68 568 17 HOH HOH . F 4 HOH B 69 569 126 HOH HOH . F 4 HOH B 70 570 7 HOH HOH . F 4 HOH B 71 571 36 HOH HOH . F 4 HOH B 72 572 155 HOH HOH . F 4 HOH B 73 573 77 HOH HOH . F 4 HOH B 74 574 262 HOH HOH . F 4 HOH B 75 575 103 HOH HOH . F 4 HOH B 76 576 229 HOH HOH . F 4 HOH B 77 577 99 HOH HOH . F 4 HOH B 78 578 63 HOH HOH . F 4 HOH B 79 579 113 HOH HOH . F 4 HOH B 80 580 65 HOH HOH . F 4 HOH B 81 581 2 HOH HOH . F 4 HOH B 82 582 61 HOH HOH . F 4 HOH B 83 583 209 HOH HOH . F 4 HOH B 84 584 222 HOH HOH . F 4 HOH B 85 585 144 HOH HOH . F 4 HOH B 86 586 218 HOH HOH . F 4 HOH B 87 587 254 HOH HOH . F 4 HOH B 88 588 171 HOH HOH . F 4 HOH B 89 589 266 HOH HOH . F 4 HOH B 90 590 83 HOH HOH . F 4 HOH B 91 591 253 HOH HOH . F 4 HOH B 92 592 265 HOH HOH . F 4 HOH B 93 593 44 HOH HOH . F 4 HOH B 94 594 250 HOH HOH . F 4 HOH B 95 595 153 HOH HOH . F 4 HOH B 96 596 185 HOH HOH . F 4 HOH B 97 597 96 HOH HOH . F 4 HOH B 98 598 157 HOH HOH . F 4 HOH B 99 599 223 HOH HOH . F 4 HOH B 100 600 115 HOH HOH . F 4 HOH B 101 601 251 HOH HOH . F 4 HOH B 102 602 78 HOH HOH . F 4 HOH B 103 603 244 HOH HOH . F 4 HOH B 104 604 235 HOH HOH . F 4 HOH B 105 605 110 HOH HOH . F 4 HOH B 106 606 202 HOH HOH . F 4 HOH B 107 607 211 HOH HOH . F 4 HOH B 108 608 148 HOH HOH . F 4 HOH B 109 609 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -21.917 22.21 -0.735 1 38.63 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 -22.618 23.304 -0.128 1 33.22 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 -21.783 20.988 0.143 1 40.13 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 -21.836 21.431 1.485 1 40.68 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 -20.501 20.183 -0.134 1 42.21 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 -19.839 20.591 -1.32 1 53.56 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #