data_6B2T # _model_server_result.job_id XZ6dyCOYyaZu-loQ-YzRzA _model_server_result.datetime_utc '2024-11-13 00:33:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 6B2T # _exptl.entry_id 6B2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B2T _cell.length_a 81.421 _cell.length_b 84.996 _cell.length_c 102.956 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ALA 142 B ALA 142 1_555 B N CSO 143 B CSO 143 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.338 ? covale ? covale2 B C ALA 142 B ALA 142 1_555 B N CSO 143 B CSO 143 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.342 ? covale ? covale3 B C CSO 143 B CSO 143 1_555 B N LEU 144 B LEU 144 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C CSO 143 B CSO 143 1_555 B N LEU 144 B LEU 144 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 6B2T _atom_sites.fract_transf_matrix[1][1] 0.012282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 401 2 PO4 PO4 . D 3 PO4 A 1 402 3 PO4 PO4 . E 3 PO4 A 1 403 4 PO4 PO4 . F 4 GOL A 1 404 3 GOL GOL . G 3 PO4 B 1 401 1 PO4 PO4 . H 3 PO4 B 1 402 5 PO4 PO4 . I 4 GOL B 1 403 1 GOL GOL . J 4 GOL B 1 404 2 GOL GOL . K 5 HOH A 1 501 51 HOH HOH . K 5 HOH A 2 502 9 HOH HOH . K 5 HOH A 3 503 28 HOH HOH . K 5 HOH A 4 504 39 HOH HOH . K 5 HOH A 5 505 46 HOH HOH . K 5 HOH A 6 506 59 HOH HOH . K 5 HOH A 7 507 26 HOH HOH . K 5 HOH A 8 508 15 HOH HOH . K 5 HOH A 9 509 55 HOH HOH . K 5 HOH A 10 510 62 HOH HOH . K 5 HOH A 11 511 13 HOH HOH . K 5 HOH A 12 512 22 HOH HOH . K 5 HOH A 13 513 36 HOH HOH . K 5 HOH A 14 514 19 HOH HOH . K 5 HOH A 15 515 65 HOH HOH . K 5 HOH A 16 516 16 HOH HOH . K 5 HOH A 17 517 2 HOH HOH . K 5 HOH A 18 518 21 HOH HOH . K 5 HOH A 19 519 25 HOH HOH . K 5 HOH A 20 520 35 HOH HOH . K 5 HOH A 21 521 50 HOH HOH . K 5 HOH A 22 522 23 HOH HOH . K 5 HOH A 23 523 63 HOH HOH . K 5 HOH A 24 524 30 HOH HOH . K 5 HOH A 25 525 33 HOH HOH . L 5 HOH B 1 501 61 HOH HOH . L 5 HOH B 2 502 8 HOH HOH . L 5 HOH B 3 503 18 HOH HOH . L 5 HOH B 4 504 10 HOH HOH . L 5 HOH B 5 505 17 HOH HOH . L 5 HOH B 6 506 14 HOH HOH . L 5 HOH B 7 507 29 HOH HOH . L 5 HOH B 8 508 12 HOH HOH . L 5 HOH B 9 509 43 HOH HOH . L 5 HOH B 10 510 34 HOH HOH . L 5 HOH B 11 511 20 HOH HOH . L 5 HOH B 12 512 54 HOH HOH . L 5 HOH B 13 513 24 HOH HOH . L 5 HOH B 14 514 38 HOH HOH . L 5 HOH B 15 515 3 HOH HOH . L 5 HOH B 16 516 53 HOH HOH . L 5 HOH B 17 517 47 HOH HOH . L 5 HOH B 18 518 37 HOH HOH . L 5 HOH B 19 519 58 HOH HOH . L 5 HOH B 20 520 52 HOH HOH . L 5 HOH B 21 521 41 HOH HOH . L 5 HOH B 22 522 11 HOH HOH . L 5 HOH B 23 523 49 HOH HOH . L 5 HOH B 24 524 56 HOH HOH . L 5 HOH B 25 525 64 HOH HOH . L 5 HOH B 26 526 60 HOH HOH . L 5 HOH B 27 527 32 HOH HOH . L 5 HOH B 28 528 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -31.69 23.109 -16.895 1 49.62 ? C1 GOL 403 B 1 HETATM 2 O O1 GOL . . . I 4 -32.753 22.984 -15.938 1 53.82 ? O1 GOL 403 B 1 HETATM 3 C C2 GOL . . . I 4 -30.606 24.062 -16.381 1 47.78 ? C2 GOL 403 B 1 HETATM 4 O O2 GOL . . . I 4 -31.013 24.696 -15.162 1 45.08 ? O2 GOL 403 B 1 HETATM 5 C C3 GOL . . . I 4 -29.268 23.356 -16.149 1 47.42 ? C3 GOL 403 B 1 HETATM 6 O O3 GOL . . . I 4 -28.339 23.624 -17.216 1 45.98 ? O3 GOL 403 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #