data_6B2T
#
_model_server_result.job_id            3dbVyhcuy9T7IiFW044FoA 
_model_server_result.datetime_utc      '2024-11-25 00:19:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b2t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    6B2T 
#
_exptl.entry_id    6B2T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6B2T 
_cell.length_a            81.421 
_cell.length_b            84.996 
_cell.length_c            102.956 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B2T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ALA 142 B ALA 142 1_555 B N CSO 143 B CSO 143 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 B C ALA 142 B ALA 142 1_555 B N CSO 143 B CSO 143 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 B C CSO 143 B CSO 143 1_555 B N LEU 144 B LEU 144 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 B C CSO 143 B CSO 143 1_555 B N LEU 144 B LEU 144 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 143 n n 
C1 C2 GOL sing 144 n n 
C1 H11 GOL sing 145 n n 
C1 H12 GOL sing 146 n n 
O1 HO1 GOL sing 147 n n 
C2 O2 GOL sing 148 n n 
C2 C3 GOL sing 149 n n 
C2 H2 GOL sing 150 n n 
O2 HO2 GOL sing 151 n n 
C3 O3 GOL sing 152 n n 
C3 H31 GOL sing 153 n n 
C3 H32 GOL sing 154 n n 
O3 HO3 GOL sing 155 n n 
#
_atom_sites.entry_id                     6B2T 
_atom_sites.fract_transf_matrix[1][1]    0.012282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011765 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009713 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PO4 A 1 401 2 PO4 PO4 . 
D 3 PO4 A 1 402 3 PO4 PO4 . 
E 3 PO4 A 1 403 4 PO4 PO4 . 
F 4 GOL A 1 404 3 GOL GOL . 
G 3 PO4 B 1 401 1 PO4 PO4 . 
H 3 PO4 B 1 402 5 PO4 PO4 . 
I 4 GOL B 1 403 1 GOL GOL . 
J 4 GOL B 1 404 2 GOL GOL . 
K 5 HOH A 1 501 51 HOH HOH . 
K 5 HOH A 2 502 9 HOH HOH . 
K 5 HOH A 3 503 28 HOH HOH . 
K 5 HOH A 4 504 39 HOH HOH . 
K 5 HOH A 5 505 46 HOH HOH . 
K 5 HOH A 6 506 59 HOH HOH . 
K 5 HOH A 7 507 26 HOH HOH . 
K 5 HOH A 8 508 15 HOH HOH . 
K 5 HOH A 9 509 55 HOH HOH . 
K 5 HOH A 10 510 62 HOH HOH . 
K 5 HOH A 11 511 13 HOH HOH . 
K 5 HOH A 12 512 22 HOH HOH . 
K 5 HOH A 13 513 36 HOH HOH . 
K 5 HOH A 14 514 19 HOH HOH . 
K 5 HOH A 15 515 65 HOH HOH . 
K 5 HOH A 16 516 16 HOH HOH . 
K 5 HOH A 17 517 2 HOH HOH . 
K 5 HOH A 18 518 21 HOH HOH . 
K 5 HOH A 19 519 25 HOH HOH . 
K 5 HOH A 20 520 35 HOH HOH . 
K 5 HOH A 21 521 50 HOH HOH . 
K 5 HOH A 22 522 23 HOH HOH . 
K 5 HOH A 23 523 63 HOH HOH . 
K 5 HOH A 24 524 30 HOH HOH . 
K 5 HOH A 25 525 33 HOH HOH . 
L 5 HOH B 1 501 61 HOH HOH . 
L 5 HOH B 2 502 8 HOH HOH . 
L 5 HOH B 3 503 18 HOH HOH . 
L 5 HOH B 4 504 10 HOH HOH . 
L 5 HOH B 5 505 17 HOH HOH . 
L 5 HOH B 6 506 14 HOH HOH . 
L 5 HOH B 7 507 29 HOH HOH . 
L 5 HOH B 8 508 12 HOH HOH . 
L 5 HOH B 9 509 43 HOH HOH . 
L 5 HOH B 10 510 34 HOH HOH . 
L 5 HOH B 11 511 20 HOH HOH . 
L 5 HOH B 12 512 54 HOH HOH . 
L 5 HOH B 13 513 24 HOH HOH . 
L 5 HOH B 14 514 38 HOH HOH . 
L 5 HOH B 15 515 3 HOH HOH . 
L 5 HOH B 16 516 53 HOH HOH . 
L 5 HOH B 17 517 47 HOH HOH . 
L 5 HOH B 18 518 37 HOH HOH . 
L 5 HOH B 19 519 58 HOH HOH . 
L 5 HOH B 20 520 52 HOH HOH . 
L 5 HOH B 21 521 41 HOH HOH . 
L 5 HOH B 22 522 11 HOH HOH . 
L 5 HOH B 23 523 49 HOH HOH . 
L 5 HOH B 24 524 56 HOH HOH . 
L 5 HOH B 25 525 64 HOH HOH . 
L 5 HOH B 26 526 60 HOH HOH . 
L 5 HOH B 27 527 32 HOH HOH . 
L 5 HOH B 28 528 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 -22.27 21.777 -0.638 1 53.12 ? C1 GOL 404 A 1 
HETATM 2 O O1 GOL . . . F 4 -22.672 23.025 -0.06 1 57.93 ? O1 GOL 404 A 1 
HETATM 3 C C2 GOL . . . F 4 -21.081 21.304 0.15 1 49.54 ? C2 GOL 404 A 1 
HETATM 4 O O2 GOL . . . F 4 -21.563 21.22 1.481 1 50.36 ? O2 GOL 404 A 1 
HETATM 5 C C3 GOL . . . F 4 -20.599 19.962 -0.364 1 51.36 ? C3 GOL 404 A 1 
HETATM 6 O O3 GOL . . . F 4 -19.241 19.711 0.011 1 55.57 ? O3 GOL 404 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#