data_6B38 # _model_server_result.job_id q5dmZwrXuMnxcc3yTXEZnw _model_server_result.datetime_utc '2025-03-05 18:42:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6B38 # _exptl.entry_id 6B38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 621.712 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-fluoro-2-{2-[(2S,6R)-6-methyl-1-(phenylsulfonyl)piperazin-2-yl]ethyl}phenyl)-3,3-bis(4-fluorophenyl)propanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B38 _cell.length_a 58.33 _cell.length_b 85.78 _cell.length_c 46.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C34 H34 F3 N3 O3 S' _chem_comp.formula_weight 621.712 _chem_comp.id CKM _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-fluoro-2-{2-[(2S,6R)-6-methyl-1-(phenylsulfonyl)piperazin-2-yl]ethyl}phenyl)-3,3-bis(4-fluorophenyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F36 C33 CKM sing 70 n n C33 C32 CKM doub 71 n y C33 C34 CKM sing 72 n y C32 C31 CKM sing 73 n y C34 C35 CKM doub 74 n y C31 C24 CKM doub 75 n y F37 C28 CKM sing 76 n n C35 C24 CKM sing 77 n y C29 C28 CKM doub 78 n y C29 C30 CKM sing 79 n y C24 C23 CKM sing 80 n n C28 C27 CKM sing 81 n y C30 C25 CKM doub 82 n y C27 C26 CKM doub 83 n y C10 C9 CKM doub 84 n y C10 C11 CKM sing 85 n y C25 C26 CKM sing 86 n y C25 C23 CKM sing 87 n n C9 C8 CKM sing 88 n y C23 C22 CKM sing 89 n n C11 C6 CKM doub 90 n y C8 C7 CKM doub 91 n y C22 C20 CKM sing 92 n n O S CKM doub 93 n n C6 C7 CKM sing 94 n y C6 S CKM sing 95 n n S O5 CKM doub 96 n n S N3 CKM sing 97 n n C20 N19 CKM sing 98 n n C20 O21 CKM doub 99 n n C1 C2 CKM sing 100 n n C1 N CKM sing 101 n n C2 N3 CKM sing 102 n n C2 C4 CKM sing 103 n n N19 C14 CKM sing 104 n n N3 C38 CKM sing 105 n n C4 C12 CKM sing 106 n n C12 C13 CKM sing 107 n n N C CKM sing 108 n n C C38 CKM sing 109 n n C38 C39 CKM sing 110 n n C14 C13 CKM doub 111 n y C14 C15 CKM sing 112 n y C13 C18 CKM sing 113 n y C15 C16 CKM doub 114 n y C18 F CKM sing 115 n n C18 C17 CKM doub 116 n y C16 C17 CKM sing 117 n y C2 H1 CKM sing 118 n n C7 H2 CKM sing 119 n n C9 H3 CKM sing 120 n n C10 H4 CKM sing 121 n n C11 H5 CKM sing 122 n n C12 H6 CKM sing 123 n n C12 H7 CKM sing 124 n n C15 H8 CKM sing 125 n n N19 H9 CKM sing 126 n n C22 H10 CKM sing 127 n n C22 H11 CKM sing 128 n n C8 H12 CKM sing 129 n n C16 H13 CKM sing 130 n n C26 H14 CKM sing 131 n n C30 H15 CKM sing 132 n n C31 H16 CKM sing 133 n n C35 H17 CKM sing 134 n n C17 H18 CKM sing 135 n n C27 H19 CKM sing 136 n n C29 H20 CKM sing 137 n n C32 H21 CKM sing 138 n n C34 H22 CKM sing 139 n n C H23 CKM sing 140 n n C H24 CKM sing 141 n n C1 H25 CKM sing 142 n n C1 H26 CKM sing 143 n n C38 H27 CKM sing 144 n n C39 H28 CKM sing 145 n n C39 H29 CKM sing 146 n n C39 H30 CKM sing 147 n n C4 H31 CKM sing 148 n n C4 H32 CKM sing 149 n n C23 H33 CKM sing 150 n n N H34 CKM sing 151 n n # _atom_sites.entry_id 6B38 _atom_sites.fract_transf_matrix[1][1] 0.017144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 101 1 CL CL . D 3 CKM B 1 101 1 CKM MRK . E 3 CKM B 1 102 1 CKM MRK . F 2 CL B 1 103 2 CL CL . G 2 CL B 1 104 3 CL CL . H 4 HOH A 1 201 46 HOH HOH . H 4 HOH A 2 202 42 HOH HOH . H 4 HOH A 3 203 87 HOH HOH . H 4 HOH A 4 204 26 HOH HOH . H 4 HOH A 5 205 105 HOH HOH . H 4 HOH A 6 206 162 HOH HOH . H 4 HOH A 7 207 81 HOH HOH . H 4 HOH A 8 208 76 HOH HOH . H 4 HOH A 9 209 77 HOH HOH . H 4 HOH A 10 210 98 HOH HOH . H 4 HOH A 11 211 38 HOH HOH . H 4 HOH A 12 212 118 HOH HOH . H 4 HOH A 13 213 116 HOH HOH . H 4 HOH A 14 214 157 HOH HOH . H 4 HOH A 15 215 40 HOH HOH . H 4 HOH A 16 216 3 HOH HOH . H 4 HOH A 17 217 8 HOH HOH . H 4 HOH A 18 218 75 HOH HOH . H 4 HOH A 19 219 27 HOH HOH . H 4 HOH A 20 220 80 HOH HOH . H 4 HOH A 21 221 6 HOH HOH . H 4 HOH A 22 222 144 HOH HOH . H 4 HOH A 23 223 13 HOH HOH . H 4 HOH A 24 224 2 HOH HOH . H 4 HOH A 25 225 62 HOH HOH . H 4 HOH A 26 226 109 HOH HOH . H 4 HOH A 27 227 9 HOH HOH . H 4 HOH A 28 228 58 HOH HOH . H 4 HOH A 29 229 141 HOH HOH . H 4 HOH A 30 230 43 HOH HOH . H 4 HOH A 31 231 99 HOH HOH . H 4 HOH A 32 232 102 HOH HOH . H 4 HOH A 33 233 137 HOH HOH . H 4 HOH A 34 234 86 HOH HOH . H 4 HOH A 35 235 142 HOH HOH . H 4 HOH A 36 236 165 HOH HOH . H 4 HOH A 37 237 148 HOH HOH . H 4 HOH A 38 238 39 HOH HOH . H 4 HOH A 39 239 90 HOH HOH . H 4 HOH A 40 240 158 HOH HOH . H 4 HOH A 41 241 55 HOH HOH . H 4 HOH A 42 242 124 HOH HOH . H 4 HOH A 43 243 94 HOH HOH . H 4 HOH A 44 244 24 HOH HOH . H 4 HOH A 45 245 84 HOH HOH . H 4 HOH A 46 246 28 HOH HOH . H 4 HOH A 47 247 122 HOH HOH . H 4 HOH A 48 248 160 HOH HOH . H 4 HOH A 49 249 56 HOH HOH . H 4 HOH A 50 250 140 HOH HOH . H 4 HOH A 51 251 129 HOH HOH . H 4 HOH A 52 252 10 HOH HOH . H 4 HOH A 53 253 22 HOH HOH . H 4 HOH A 54 254 117 HOH HOH . H 4 HOH A 55 255 123 HOH HOH . H 4 HOH A 56 256 19 HOH HOH . H 4 HOH A 57 257 60 HOH HOH . H 4 HOH A 58 258 47 HOH HOH . H 4 HOH A 59 259 120 HOH HOH . H 4 HOH A 60 260 63 HOH HOH . H 4 HOH A 61 261 103 HOH HOH . H 4 HOH A 62 262 14 HOH HOH . H 4 HOH A 63 263 155 HOH HOH . H 4 HOH A 64 264 70 HOH HOH . H 4 HOH A 65 265 106 HOH HOH . H 4 HOH A 66 266 108 HOH HOH . H 4 HOH A 67 267 68 HOH HOH . H 4 HOH A 68 268 153 HOH HOH . H 4 HOH A 69 269 159 HOH HOH . H 4 HOH A 70 270 150 HOH HOH . H 4 HOH A 71 271 48 HOH HOH . H 4 HOH A 72 272 126 HOH HOH . H 4 HOH A 73 273 104 HOH HOH . H 4 HOH A 74 274 145 HOH HOH . H 4 HOH A 75 275 66 HOH HOH . H 4 HOH A 76 276 134 HOH HOH . H 4 HOH A 77 277 114 HOH HOH . H 4 HOH A 78 278 128 HOH HOH . H 4 HOH A 79 279 164 HOH HOH . I 4 HOH B 1 201 73 HOH HOH . I 4 HOH B 2 202 7 HOH HOH . I 4 HOH B 3 203 50 HOH HOH . I 4 HOH B 4 204 72 HOH HOH . I 4 HOH B 5 205 92 HOH HOH . I 4 HOH B 6 206 74 HOH HOH . I 4 HOH B 7 207 111 HOH HOH . I 4 HOH B 8 208 53 HOH HOH . I 4 HOH B 9 209 49 HOH HOH . I 4 HOH B 10 210 161 HOH HOH . I 4 HOH B 11 211 138 HOH HOH . I 4 HOH B 12 212 35 HOH HOH . I 4 HOH B 13 213 71 HOH HOH . I 4 HOH B 14 214 21 HOH HOH . I 4 HOH B 15 215 152 HOH HOH . I 4 HOH B 16 216 30 HOH HOH . I 4 HOH B 17 217 125 HOH HOH . I 4 HOH B 18 218 1 HOH HOH . I 4 HOH B 19 219 59 HOH HOH . I 4 HOH B 20 220 4 HOH HOH . I 4 HOH B 21 221 139 HOH HOH . I 4 HOH B 22 222 61 HOH HOH . I 4 HOH B 23 223 16 HOH HOH . I 4 HOH B 24 224 95 HOH HOH . I 4 HOH B 25 225 131 HOH HOH . I 4 HOH B 26 226 88 HOH HOH . I 4 HOH B 27 227 20 HOH HOH . I 4 HOH B 28 228 33 HOH HOH . I 4 HOH B 29 229 156 HOH HOH . I 4 HOH B 30 230 85 HOH HOH . I 4 HOH B 31 231 154 HOH HOH . I 4 HOH B 32 232 52 HOH HOH . I 4 HOH B 33 233 96 HOH HOH . I 4 HOH B 34 234 5 HOH HOH . I 4 HOH B 35 235 163 HOH HOH . I 4 HOH B 36 236 54 HOH HOH . I 4 HOH B 37 237 41 HOH HOH . I 4 HOH B 38 238 45 HOH HOH . I 4 HOH B 39 239 79 HOH HOH . I 4 HOH B 40 240 107 HOH HOH . I 4 HOH B 41 241 130 HOH HOH . I 4 HOH B 42 242 23 HOH HOH . I 4 HOH B 43 243 83 HOH HOH . I 4 HOH B 44 244 91 HOH HOH . I 4 HOH B 45 245 112 HOH HOH . I 4 HOH B 46 246 97 HOH HOH . I 4 HOH B 47 247 37 HOH HOH . I 4 HOH B 48 248 15 HOH HOH . I 4 HOH B 49 249 34 HOH HOH . I 4 HOH B 50 250 36 HOH HOH . I 4 HOH B 51 251 64 HOH HOH . I 4 HOH B 52 252 25 HOH HOH . I 4 HOH B 53 253 101 HOH HOH . I 4 HOH B 54 254 115 HOH HOH . I 4 HOH B 55 255 44 HOH HOH . I 4 HOH B 56 256 133 HOH HOH . I 4 HOH B 57 257 100 HOH HOH . I 4 HOH B 58 258 51 HOH HOH . I 4 HOH B 59 259 11 HOH HOH . I 4 HOH B 60 260 89 HOH HOH . I 4 HOH B 61 261 147 HOH HOH . I 4 HOH B 62 262 12 HOH HOH . I 4 HOH B 63 263 31 HOH HOH . I 4 HOH B 64 264 17 HOH HOH . I 4 HOH B 65 265 135 HOH HOH . I 4 HOH B 66 266 136 HOH HOH . I 4 HOH B 67 267 110 HOH HOH . I 4 HOH B 68 268 18 HOH HOH . I 4 HOH B 69 269 149 HOH HOH . I 4 HOH B 70 270 69 HOH HOH . I 4 HOH B 71 271 82 HOH HOH . I 4 HOH B 72 272 93 HOH HOH . I 4 HOH B 73 273 67 HOH HOH . I 4 HOH B 74 274 151 HOH HOH . I 4 HOH B 75 275 146 HOH HOH . I 4 HOH B 76 276 78 HOH HOH . I 4 HOH B 77 277 29 HOH HOH . I 4 HOH B 78 278 121 HOH HOH . I 4 HOH B 79 279 32 HOH HOH . I 4 HOH B 80 280 65 HOH HOH . I 4 HOH B 81 281 127 HOH HOH . I 4 HOH B 82 282 113 HOH HOH . I 4 HOH B 83 283 119 HOH HOH . I 4 HOH B 84 284 143 HOH HOH . I 4 HOH B 85 285 132 HOH HOH . I 4 HOH B 86 286 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 CKM . A . D 3 -15.348 20.487 -5.529 0.5 13.41 ? C2 CKM 101 B 1 HETATM 2 C C7 CKM . A . D 3 -19.97 19.251 -6.709 0.5 18.31 ? C7 CKM 101 B 1 HETATM 3 C C9 CKM . A . D 3 -19.758 17.574 -8.382 0.5 18.28 ? C9 CKM 101 B 1 HETATM 4 C C10 CKM . A . D 3 -18.452 17.961 -8.626 0.5 19.41 ? C10 CKM 101 B 1 HETATM 5 C C11 CKM . A . D 3 -17.882 19 -7.917 0.5 17.08 ? C11 CKM 101 B 1 HETATM 6 C C12 CKM . A . D 3 -14.772 22.805 -4.635 0.5 11.79 ? C12 CKM 101 B 1 HETATM 7 C C13 CKM . A . D 3 -13.895 23.583 -3.686 0.5 12.58 ? C13 CKM 101 B 1 HETATM 8 C C15 CKM . A . D 3 -11.991 24.99 -3.193 0.5 13.18 ? C15 CKM 101 B 1 HETATM 9 C C18 CKM . A . D 3 -14.208 23.598 -2.336 0.5 12.81 ? C18 CKM 101 B 1 HETATM 10 N N19 CKM . A . D 3 -12.384 24.33 -5.467 0.5 11.19 ? N19 CKM 101 B 1 HETATM 11 C C20 CKM . A . D 3 -11.152 23.869 -5.875 0.5 10.79 ? C20 CKM 101 B 1 HETATM 12 C C22 CKM . A . D 3 -10.838 24.199 -7.313 0.5 11.57 ? C22 CKM 101 B 1 HETATM 13 C C8 CKM . A . D 3 -20.528 18.215 -7.433 0.5 18.13 ? C8 CKM 101 B 1 HETATM 14 C C16 CKM . A . D 3 -12.308 24.982 -1.848 0.5 12.1 ? C16 CKM 101 B 1 HETATM 15 C C26 CKM . A . D 3 -12.51 21.13 -8.302 0.5 11.13 ? C26 CKM 101 B 1 HETATM 16 C C30 CKM . A . D 3 -13.08 23.271 -9.192 0.5 13.45 ? C30 CKM 101 B 1 HETATM 17 C C31 CKM . A . D 3 -10.134 23.984 -10.34 0.5 19.02 ? C31 CKM 101 B 1 HETATM 18 C C35 CKM . A . D 3 -9.099 21.934 -9.677 0.5 12.11 ? C35 CKM 101 B 1 HETATM 19 C C17 CKM . A . D 3 -13.42 24.281 -1.432 0.5 11.9 ? C17 CKM 101 B 1 HETATM 20 C C27 CKM . A . D 3 -13.747 20.646 -8.684 0.5 10.66 ? C27 CKM 101 B 1 HETATM 21 C C29 CKM . A . D 3 -14.312 22.793 -9.58 0.5 12.79 ? C29 CKM 101 B 1 HETATM 22 C C32 CKM . A . D 3 -9.393 24.004 -11.507 0.5 18.92 ? C32 CKM 101 B 1 HETATM 23 C C34 CKM . A . D 3 -8.355 21.941 -10.846 0.5 16.8 ? C34 CKM 101 B 1 HETATM 24 C C25 CKM . A . D 3 -12.176 22.443 -8.551 0.5 12.09 ? C25 CKM 101 B 1 HETATM 25 C C24 CKM . A . D 3 -9.988 22.963 -9.415 0.5 15.74 ? C24 CKM 101 B 1 HETATM 26 C C14 CKM . A . D 3 -12.771 24.291 -4.102 0.5 12.39 ? C14 CKM 101 B 1 HETATM 27 C C28 CKM . A . D 3 -14.641 21.477 -9.323 0.5 13.76 ? C28 CKM 101 B 1 HETATM 28 C C33 CKM . A . D 3 -8.514 22.972 -11.75 0.5 21.05 ? C33 CKM 101 B 1 HETATM 29 C C6 CKM . A . D 3 -18.663 19.619 -6.962 0.5 17.11 ? C6 CKM 101 B 1 HETATM 30 C C CKM . A . D 3 -16.476 17.957 -4.489 0.5 16.28 ? C CKM 101 B 1 HETATM 31 C C1 CKM . A . D 3 -14.726 19.122 -5.754 0.5 15.99 ? C1 CKM 101 B 1 HETATM 32 C C38 CKM . A . D 3 -17.215 19.248 -4.201 0.5 15.54 ? C38 CKM 101 B 1 HETATM 33 C C39 CKM . A . D 3 -17.142 19.587 -2.731 0.5 18.49 ? C39 CKM 101 B 1 HETATM 34 C C4 CKM . A . D 3 -14.418 21.32 -4.655 0.5 12.88 ? C4 CKM 101 B 1 HETATM 35 C C23 CKM . A . D 3 -10.813 22.921 -8.152 0.5 12.24 ? C23 CKM 101 B 1 HETATM 36 N N3 CKM . A . D 3 -16.729 20.435 -4.953 0.5 14.48 ? N3 CKM 101 B 1 HETATM 37 N N CKM . A . D 3 -15.027 18.265 -4.587 0.5 16.28 ? N CKM 101 B 1 HETATM 38 O O21 CKM . A . D 3 -10.36 23.281 -5.157 0.5 10.8 ? O21 CKM 101 B 1 HETATM 39 O O CKM . A . D 3 -17.389 21.883 -6.988 0.5 16.78 ? O CKM 101 B 1 HETATM 40 O O5 CKM . A . D 3 -19.024 21.454 -5.148 0.5 15.02 ? O5 CKM 101 B 1 HETATM 41 F F37 CKM . A . D 3 -15.842 20.996 -9.703 0.5 17.2 ? F37 CKM 101 B 1 HETATM 42 F F36 CKM . A . D 3 -7.807 22.991 -12.895 0.5 24.64 ? F36 CKM 101 B 1 HETATM 43 F F CKM . A . D 3 -15.286 22.917 -1.902 0.5 15.91 ? F CKM 101 B 1 HETATM 44 S S CKM . A . D 3 -17.982 20.967 -6.027 0.5 16.74 ? S CKM 101 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #