data_6B38 # _model_server_result.job_id jqMKsp2Hzi-jl5l9fqwM0g _model_server_result.datetime_utc '2025-03-05 18:54:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 6B38 # _exptl.entry_id 6B38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 621.712 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-fluoro-2-{2-[(2S,6R)-6-methyl-1-(phenylsulfonyl)piperazin-2-yl]ethyl}phenyl)-3,3-bis(4-fluorophenyl)propanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B38 _cell.length_a 58.33 _cell.length_b 85.78 _cell.length_c 46.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C34 H34 F3 N3 O3 S' _chem_comp.formula_weight 621.712 _chem_comp.id CKM _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-fluoro-2-{2-[(2S,6R)-6-methyl-1-(phenylsulfonyl)piperazin-2-yl]ethyl}phenyl)-3,3-bis(4-fluorophenyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F36 C33 CKM sing 70 n n C33 C32 CKM doub 71 n y C33 C34 CKM sing 72 n y C32 C31 CKM sing 73 n y C34 C35 CKM doub 74 n y C31 C24 CKM doub 75 n y F37 C28 CKM sing 76 n n C35 C24 CKM sing 77 n y C29 C28 CKM doub 78 n y C29 C30 CKM sing 79 n y C24 C23 CKM sing 80 n n C28 C27 CKM sing 81 n y C30 C25 CKM doub 82 n y C27 C26 CKM doub 83 n y C10 C9 CKM doub 84 n y C10 C11 CKM sing 85 n y C25 C26 CKM sing 86 n y C25 C23 CKM sing 87 n n C9 C8 CKM sing 88 n y C23 C22 CKM sing 89 n n C11 C6 CKM doub 90 n y C8 C7 CKM doub 91 n y C22 C20 CKM sing 92 n n O S CKM doub 93 n n C6 C7 CKM sing 94 n y C6 S CKM sing 95 n n S O5 CKM doub 96 n n S N3 CKM sing 97 n n C20 N19 CKM sing 98 n n C20 O21 CKM doub 99 n n C1 C2 CKM sing 100 n n C1 N CKM sing 101 n n C2 N3 CKM sing 102 n n C2 C4 CKM sing 103 n n N19 C14 CKM sing 104 n n N3 C38 CKM sing 105 n n C4 C12 CKM sing 106 n n C12 C13 CKM sing 107 n n N C CKM sing 108 n n C C38 CKM sing 109 n n C38 C39 CKM sing 110 n n C14 C13 CKM doub 111 n y C14 C15 CKM sing 112 n y C13 C18 CKM sing 113 n y C15 C16 CKM doub 114 n y C18 F CKM sing 115 n n C18 C17 CKM doub 116 n y C16 C17 CKM sing 117 n y C2 H1 CKM sing 118 n n C7 H2 CKM sing 119 n n C9 H3 CKM sing 120 n n C10 H4 CKM sing 121 n n C11 H5 CKM sing 122 n n C12 H6 CKM sing 123 n n C12 H7 CKM sing 124 n n C15 H8 CKM sing 125 n n N19 H9 CKM sing 126 n n C22 H10 CKM sing 127 n n C22 H11 CKM sing 128 n n C8 H12 CKM sing 129 n n C16 H13 CKM sing 130 n n C26 H14 CKM sing 131 n n C30 H15 CKM sing 132 n n C31 H16 CKM sing 133 n n C35 H17 CKM sing 134 n n C17 H18 CKM sing 135 n n C27 H19 CKM sing 136 n n C29 H20 CKM sing 137 n n C32 H21 CKM sing 138 n n C34 H22 CKM sing 139 n n C H23 CKM sing 140 n n C H24 CKM sing 141 n n C1 H25 CKM sing 142 n n C1 H26 CKM sing 143 n n C38 H27 CKM sing 144 n n C39 H28 CKM sing 145 n n C39 H29 CKM sing 146 n n C39 H30 CKM sing 147 n n C4 H31 CKM sing 148 n n C4 H32 CKM sing 149 n n C23 H33 CKM sing 150 n n N H34 CKM sing 151 n n # _atom_sites.entry_id 6B38 _atom_sites.fract_transf_matrix[1][1] 0.017144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 101 1 CL CL . D 3 CKM B 1 101 1 CKM MRK . E 3 CKM B 1 102 1 CKM MRK . F 2 CL B 1 103 2 CL CL . G 2 CL B 1 104 3 CL CL . H 4 HOH A 1 201 46 HOH HOH . H 4 HOH A 2 202 42 HOH HOH . H 4 HOH A 3 203 87 HOH HOH . H 4 HOH A 4 204 26 HOH HOH . H 4 HOH A 5 205 105 HOH HOH . H 4 HOH A 6 206 162 HOH HOH . H 4 HOH A 7 207 81 HOH HOH . H 4 HOH A 8 208 76 HOH HOH . H 4 HOH A 9 209 77 HOH HOH . H 4 HOH A 10 210 98 HOH HOH . H 4 HOH A 11 211 38 HOH HOH . H 4 HOH A 12 212 118 HOH HOH . H 4 HOH A 13 213 116 HOH HOH . H 4 HOH A 14 214 157 HOH HOH . H 4 HOH A 15 215 40 HOH HOH . H 4 HOH A 16 216 3 HOH HOH . H 4 HOH A 17 217 8 HOH HOH . H 4 HOH A 18 218 75 HOH HOH . H 4 HOH A 19 219 27 HOH HOH . H 4 HOH A 20 220 80 HOH HOH . H 4 HOH A 21 221 6 HOH HOH . H 4 HOH A 22 222 144 HOH HOH . H 4 HOH A 23 223 13 HOH HOH . H 4 HOH A 24 224 2 HOH HOH . H 4 HOH A 25 225 62 HOH HOH . H 4 HOH A 26 226 109 HOH HOH . H 4 HOH A 27 227 9 HOH HOH . H 4 HOH A 28 228 58 HOH HOH . H 4 HOH A 29 229 141 HOH HOH . H 4 HOH A 30 230 43 HOH HOH . H 4 HOH A 31 231 99 HOH HOH . H 4 HOH A 32 232 102 HOH HOH . H 4 HOH A 33 233 137 HOH HOH . H 4 HOH A 34 234 86 HOH HOH . H 4 HOH A 35 235 142 HOH HOH . H 4 HOH A 36 236 165 HOH HOH . H 4 HOH A 37 237 148 HOH HOH . H 4 HOH A 38 238 39 HOH HOH . H 4 HOH A 39 239 90 HOH HOH . H 4 HOH A 40 240 158 HOH HOH . H 4 HOH A 41 241 55 HOH HOH . H 4 HOH A 42 242 124 HOH HOH . H 4 HOH A 43 243 94 HOH HOH . H 4 HOH A 44 244 24 HOH HOH . H 4 HOH A 45 245 84 HOH HOH . H 4 HOH A 46 246 28 HOH HOH . H 4 HOH A 47 247 122 HOH HOH . H 4 HOH A 48 248 160 HOH HOH . H 4 HOH A 49 249 56 HOH HOH . H 4 HOH A 50 250 140 HOH HOH . H 4 HOH A 51 251 129 HOH HOH . H 4 HOH A 52 252 10 HOH HOH . H 4 HOH A 53 253 22 HOH HOH . H 4 HOH A 54 254 117 HOH HOH . H 4 HOH A 55 255 123 HOH HOH . H 4 HOH A 56 256 19 HOH HOH . H 4 HOH A 57 257 60 HOH HOH . H 4 HOH A 58 258 47 HOH HOH . H 4 HOH A 59 259 120 HOH HOH . H 4 HOH A 60 260 63 HOH HOH . H 4 HOH A 61 261 103 HOH HOH . H 4 HOH A 62 262 14 HOH HOH . H 4 HOH A 63 263 155 HOH HOH . H 4 HOH A 64 264 70 HOH HOH . H 4 HOH A 65 265 106 HOH HOH . H 4 HOH A 66 266 108 HOH HOH . H 4 HOH A 67 267 68 HOH HOH . H 4 HOH A 68 268 153 HOH HOH . H 4 HOH A 69 269 159 HOH HOH . H 4 HOH A 70 270 150 HOH HOH . H 4 HOH A 71 271 48 HOH HOH . H 4 HOH A 72 272 126 HOH HOH . H 4 HOH A 73 273 104 HOH HOH . H 4 HOH A 74 274 145 HOH HOH . H 4 HOH A 75 275 66 HOH HOH . H 4 HOH A 76 276 134 HOH HOH . H 4 HOH A 77 277 114 HOH HOH . H 4 HOH A 78 278 128 HOH HOH . H 4 HOH A 79 279 164 HOH HOH . I 4 HOH B 1 201 73 HOH HOH . I 4 HOH B 2 202 7 HOH HOH . I 4 HOH B 3 203 50 HOH HOH . I 4 HOH B 4 204 72 HOH HOH . I 4 HOH B 5 205 92 HOH HOH . I 4 HOH B 6 206 74 HOH HOH . I 4 HOH B 7 207 111 HOH HOH . I 4 HOH B 8 208 53 HOH HOH . I 4 HOH B 9 209 49 HOH HOH . I 4 HOH B 10 210 161 HOH HOH . I 4 HOH B 11 211 138 HOH HOH . I 4 HOH B 12 212 35 HOH HOH . I 4 HOH B 13 213 71 HOH HOH . I 4 HOH B 14 214 21 HOH HOH . I 4 HOH B 15 215 152 HOH HOH . I 4 HOH B 16 216 30 HOH HOH . I 4 HOH B 17 217 125 HOH HOH . I 4 HOH B 18 218 1 HOH HOH . I 4 HOH B 19 219 59 HOH HOH . I 4 HOH B 20 220 4 HOH HOH . I 4 HOH B 21 221 139 HOH HOH . I 4 HOH B 22 222 61 HOH HOH . I 4 HOH B 23 223 16 HOH HOH . I 4 HOH B 24 224 95 HOH HOH . I 4 HOH B 25 225 131 HOH HOH . I 4 HOH B 26 226 88 HOH HOH . I 4 HOH B 27 227 20 HOH HOH . I 4 HOH B 28 228 33 HOH HOH . I 4 HOH B 29 229 156 HOH HOH . I 4 HOH B 30 230 85 HOH HOH . I 4 HOH B 31 231 154 HOH HOH . I 4 HOH B 32 232 52 HOH HOH . I 4 HOH B 33 233 96 HOH HOH . I 4 HOH B 34 234 5 HOH HOH . I 4 HOH B 35 235 163 HOH HOH . I 4 HOH B 36 236 54 HOH HOH . I 4 HOH B 37 237 41 HOH HOH . I 4 HOH B 38 238 45 HOH HOH . I 4 HOH B 39 239 79 HOH HOH . I 4 HOH B 40 240 107 HOH HOH . I 4 HOH B 41 241 130 HOH HOH . I 4 HOH B 42 242 23 HOH HOH . I 4 HOH B 43 243 83 HOH HOH . I 4 HOH B 44 244 91 HOH HOH . I 4 HOH B 45 245 112 HOH HOH . I 4 HOH B 46 246 97 HOH HOH . I 4 HOH B 47 247 37 HOH HOH . I 4 HOH B 48 248 15 HOH HOH . I 4 HOH B 49 249 34 HOH HOH . I 4 HOH B 50 250 36 HOH HOH . I 4 HOH B 51 251 64 HOH HOH . I 4 HOH B 52 252 25 HOH HOH . I 4 HOH B 53 253 101 HOH HOH . I 4 HOH B 54 254 115 HOH HOH . I 4 HOH B 55 255 44 HOH HOH . I 4 HOH B 56 256 133 HOH HOH . I 4 HOH B 57 257 100 HOH HOH . I 4 HOH B 58 258 51 HOH HOH . I 4 HOH B 59 259 11 HOH HOH . I 4 HOH B 60 260 89 HOH HOH . I 4 HOH B 61 261 147 HOH HOH . I 4 HOH B 62 262 12 HOH HOH . I 4 HOH B 63 263 31 HOH HOH . I 4 HOH B 64 264 17 HOH HOH . I 4 HOH B 65 265 135 HOH HOH . I 4 HOH B 66 266 136 HOH HOH . I 4 HOH B 67 267 110 HOH HOH . I 4 HOH B 68 268 18 HOH HOH . I 4 HOH B 69 269 149 HOH HOH . I 4 HOH B 70 270 69 HOH HOH . I 4 HOH B 71 271 82 HOH HOH . I 4 HOH B 72 272 93 HOH HOH . I 4 HOH B 73 273 67 HOH HOH . I 4 HOH B 74 274 151 HOH HOH . I 4 HOH B 75 275 146 HOH HOH . I 4 HOH B 76 276 78 HOH HOH . I 4 HOH B 77 277 29 HOH HOH . I 4 HOH B 78 278 121 HOH HOH . I 4 HOH B 79 279 32 HOH HOH . I 4 HOH B 80 280 65 HOH HOH . I 4 HOH B 81 281 127 HOH HOH . I 4 HOH B 82 282 113 HOH HOH . I 4 HOH B 83 283 119 HOH HOH . I 4 HOH B 84 284 143 HOH HOH . I 4 HOH B 85 285 132 HOH HOH . I 4 HOH B 86 286 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 CKM . B . E 3 -17.339 19.334 -5.054 0.5 32.48 ? C2 CKM 102 B 1 HETATM 2 C C7 CKM . B . E 3 -14.873 23.406 -5.389 0.5 41.68 ? C7 CKM 102 B 1 HETATM 3 C C9 CKM . B . E 3 -14.163 23.875 -3.159 0.5 42.01 ? C9 CKM 102 B 1 HETATM 4 C C10 CKM . B . E 3 -15.197 23.105 -2.663 0.5 42.11 ? C10 CKM 102 B 1 HETATM 5 C C11 CKM . B . E 3 -16.079 22.483 -3.525 0.5 41.38 ? C11 CKM 102 B 1 HETATM 6 C C12 CKM . B . E 3 -19.098 18.585 -6.676 0.5 26.32 ? C12 CKM 102 B 1 HETATM 7 C C13 CKM . B . E 3 -19.547 17.434 -7.52 0.5 23.71 ? C13 CKM 102 B 1 HETATM 8 C C15 CKM . B . E 3 -21.162 15.72 -8.039 0.5 25.61 ? C15 CKM 102 B 1 HETATM 9 C C18 CKM . B . E 3 -18.785 16.997 -8.587 0.5 26.04 ? C18 CKM 102 B 1 HETATM 10 N N19 CKM . B . E 3 -21.55 17.183 -6.186 0.5 19.97 ? N19 CKM 102 B 1 HETATM 11 C C20 CKM . B . E 3 -21.673 16.339 -5.107 0.5 19.58 ? C20 CKM 102 B 1 HETATM 12 C C22 CKM . B . E 3 -22.653 16.864 -4.101 0.5 21 ? C22 CKM 102 B 1 HETATM 13 C C8 CKM . B . E 3 -13.998 24.025 -4.52 0.5 42.13 ? C8 CKM 102 B 1 HETATM 14 C C16 CKM . B . E 3 -20.382 15.29 -9.089 0.5 27.17 ? C16 CKM 102 B 1 HETATM 15 C C26 CKM . B . E 3 -19.981 18.354 -2.052 0.5 25.73 ? C26 CKM 102 B 1 HETATM 16 C C30 CKM . B . E 3 -21.718 19.547 -3.183 0.5 27.54 ? C30 CKM 102 B 1 HETATM 17 C C31 CKM . B . E 3 -24.22 17.695 -1.691 0.5 26.6 ? C31 CKM 102 B 1 HETATM 18 C C35 CKM . B . E 3 -22.57 16.492 -0.439 0.5 27.6 ? C35 CKM 102 B 1 HETATM 19 C C17 CKM . B . E 3 -19.192 15.933 -9.357 0.5 26.46 ? C17 CKM 102 B 1 HETATM 20 C C27 CKM . B . E 3 -19.248 19.516 -1.948 0.5 28.47 ? C27 CKM 102 B 1 HETATM 21 C C29 CKM . B . E 3 -20.978 20.701 -3.087 0.5 29.53 ? C29 CKM 102 B 1 HETATM 22 C C32 CKM . B . E 3 -25.083 17.669 -0.616 0.5 26.87 ? C32 CKM 102 B 1 HETATM 23 C C34 CKM . B . E 3 -23.431 16.467 0.637 0.5 29.84 ? C34 CKM 102 B 1 HETATM 24 C C25 CKM . B . E 3 -21.214 18.371 -2.673 0.5 25.78 ? C25 CKM 102 B 1 HETATM 25 C C24 CKM . B . E 3 -22.969 17.103 -1.61 0.5 25.84 ? C24 CKM 102 B 1 HETATM 26 C C14 CKM . B . E 3 -20.743 16.785 -7.262 0.5 22.74 ? C14 CKM 102 B 1 HETATM 27 C C28 CKM . B . E 3 -19.751 20.687 -2.474 0.5 31.17 ? C28 CKM 102 B 1 HETATM 28 C C33 CKM . B . E 3 -24.68 17.049 0.545 0.5 29.75 ? C33 CKM 102 B 1 HETATM 29 C C6 CKM . B . E 3 -15.905 22.641 -4.882 0.5 41.05 ? C6 CKM 102 B 1 HETATM 30 C C CKM . B . E 3 -14.37 19.392 -5.101 0.5 36.34 ? C CKM 102 B 1 HETATM 31 C C1 CKM . B . E 3 -16.456 18.829 -3.938 0.5 34.67 ? C1 CKM 102 B 1 HETATM 32 C C38 CKM . B . E 3 -15.123 20.052 -6.233 0.5 36.79 ? C38 CKM 102 B 1 HETATM 33 C C39 CKM . B . E 3 -14.855 19.4 -7.559 0.5 37.65 ? C39 CKM 102 B 1 HETATM 34 C C4 CKM . B . E 3 -18.001 18.152 -5.729 0.5 28.75 ? C4 CKM 102 B 1 HETATM 35 C C23 CKM . B . E 3 -22.002 17.112 -2.747 0.5 23.9 ? C23 CKM 102 B 1 HETATM 36 N N3 CKM . B . E 3 -16.602 20.17 -6.049 0.5 36.24 ? N3 CKM 102 B 1 HETATM 37 N N CKM . B . E 3 -15.209 18.305 -4.552 0.5 36.04 ? N CKM 102 B 1 HETATM 38 O O21 CKM . B . E 3 -21.085 15.27 -5.003 0.5 14.29 ? O21 CKM 102 B 1 HETATM 39 O O CKM . B . E 3 -18.377 22.045 -5.475 0.5 41.89 ? O CKM 102 B 1 HETATM 40 O O5 CKM . B . E 3 -16.68 22.263 -7.332 0.5 41.55 ? O5 CKM 102 B 1 HETATM 41 F F37 CKM . B . E 3 -19.068 21.842 -2.408 0.5 35.09 ? F37 CKM 102 B 1 HETATM 42 F F36 CKM . B . E 3 -25.509 17.016 1.608 0.5 30.85 ? F36 CKM 102 B 1 HETATM 43 F F CKM . B . E 3 -17.626 17.594 -8.89 0.5 27.51 ? F CKM 102 B 1 HETATM 44 S S CKM . B . E 3 -17.039 21.839 -5.999 0.5 40.91 ? S CKM 102 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #