data_6B3H # _model_server_result.job_id nqb91XT6Z-js1lKuVMSgJg _model_server_result.datetime_utc '2025-03-05 19:33:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 6B3H # _exptl.entry_id 6B3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 571.654 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{2-[(6R,9S)-2,2-dioxo-2lambda~6~-thia-1,7-diazabicyclo[4.3.1]decan-9-yl]ethyl}-3-fluorophenyl)-3,3-bis(4-fluorophenyl)propanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B3H _cell.length_a 58.43 _cell.length_b 86.2 _cell.length_c 46.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C30 H32 F3 N3 O3 S' _chem_comp.formula_weight 571.654 _chem_comp.id CN4 _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{2-[(6R,9S)-2,2-dioxo-2lambda~6~-thia-1,7-diazabicyclo[4.3.1]decan-9-yl]ethyl}-3-fluorophenyl)-3,3-bis(4-fluorophenyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C27 CN4 sing 70 n n C27 C26 CN4 doub 71 n y C27 C28 CN4 sing 72 n y C26 C25 CN4 sing 73 n y C28 C29 CN4 doub 74 n y C25 C24 CN4 doub 75 n y C29 C24 CN4 sing 76 n y C24 C17 CN4 sing 77 n n F C21 CN4 sing 78 n n C20 C21 CN4 doub 79 n y C20 C19 CN4 sing 80 n y C21 C22 CN4 sing 81 n y C19 C18 CN4 doub 82 n y C22 C23 CN4 doub 83 n y C18 C17 CN4 sing 84 n n C18 C23 CN4 sing 85 n y C17 C16 CN4 sing 86 n n C16 C15 CN4 sing 87 n n O S CN4 doub 88 n n C4 S CN4 sing 89 n n C4 C5 CN4 sing 90 n n C15 N2 CN4 sing 91 n n C15 O2 CN4 doub 92 n n S O1 CN4 doub 93 n n S N1 CN4 sing 94 n n C2 C3 CN4 sing 95 n n C2 N CN4 sing 96 n n C5 C6 CN4 sing 97 n n N2 C14 CN4 sing 98 n n C3 N1 CN4 sing 99 n n C3 C7 CN4 sing 100 n n C6 C1 CN4 sing 101 n n N1 C CN4 sing 102 n n N C1 CN4 sing 103 n n C8 C7 CN4 sing 104 n n C8 C9 CN4 sing 105 n n C14 C9 CN4 doub 106 n y C14 C13 CN4 sing 107 n y C1 C CN4 sing 108 n n C9 C10 CN4 sing 109 n y C13 C12 CN4 doub 110 n y C10 F2 CN4 sing 111 n n C10 C11 CN4 doub 112 n y C12 C11 CN4 sing 113 n y C2 H1 CN4 sing 114 n n C2 H2 CN4 sing 115 n n C3 H3 CN4 sing 116 n n C5 H4 CN4 sing 117 n n C5 H5 CN4 sing 118 n n C7 H6 CN4 sing 119 n n C7 H7 CN4 sing 120 n n C11 H8 CN4 sing 121 n n C12 H9 CN4 sing 122 n n C13 H10 CN4 sing 123 n n C20 H11 CN4 sing 124 n n C22 H12 CN4 sing 125 n n N2 H13 CN4 sing 126 n n C16 H14 CN4 sing 127 n n C16 H15 CN4 sing 128 n n C17 H16 CN4 sing 129 n n C29 H17 CN4 sing 130 n n C28 H18 CN4 sing 131 n n C26 H19 CN4 sing 132 n n C25 H20 CN4 sing 133 n n C23 H21 CN4 sing 134 n n C19 H22 CN4 sing 135 n n C8 H23 CN4 sing 136 n n C8 H24 CN4 sing 137 n n N H25 CN4 sing 138 n n C H27 CN4 sing 139 n n C H28 CN4 sing 140 n n C4 H29 CN4 sing 141 n n C4 H30 CN4 sing 142 n n C6 H31 CN4 sing 143 n n C6 H32 CN4 sing 144 n n C1 H33 CN4 sing 145 n n # _atom_sites.entry_id 6B3H _atom_sites.fract_transf_matrix[1][1] 0.017114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CN4 A 1 101 101 CN4 MRK . D 3 CL A 1 102 1 CL CL . E 2 CN4 B 1 101 100 CN4 MRK . F 3 CL B 1 102 2 CL CL . G 3 CL B 1 103 3 CL CL . H 3 CL B 1 104 4 CL CL . I 4 HOH A 1 201 137 HOH HOH . I 4 HOH A 2 202 143 HOH HOH . I 4 HOH A 3 203 16 HOH HOH . I 4 HOH A 4 204 38 HOH HOH . I 4 HOH A 5 205 30 HOH HOH . I 4 HOH A 6 206 153 HOH HOH . I 4 HOH A 7 207 115 HOH HOH . I 4 HOH A 8 208 4 HOH HOH . I 4 HOH A 9 209 96 HOH HOH . I 4 HOH A 10 210 128 HOH HOH . I 4 HOH A 11 211 149 HOH HOH . I 4 HOH A 12 212 23 HOH HOH . I 4 HOH A 13 213 150 HOH HOH . I 4 HOH A 14 214 47 HOH HOH . I 4 HOH A 15 215 105 HOH HOH . I 4 HOH A 16 216 147 HOH HOH . I 4 HOH A 17 217 3 HOH HOH . I 4 HOH A 18 218 132 HOH HOH . I 4 HOH A 19 219 98 HOH HOH . I 4 HOH A 20 220 88 HOH HOH . I 4 HOH A 21 221 17 HOH HOH . I 4 HOH A 22 222 106 HOH HOH . I 4 HOH A 23 223 79 HOH HOH . I 4 HOH A 24 224 133 HOH HOH . I 4 HOH A 25 225 27 HOH HOH . I 4 HOH A 26 226 107 HOH HOH . I 4 HOH A 27 227 100 HOH HOH . I 4 HOH A 28 228 6 HOH HOH . I 4 HOH A 29 229 63 HOH HOH . I 4 HOH A 30 230 146 HOH HOH . I 4 HOH A 31 231 68 HOH HOH . I 4 HOH A 32 232 131 HOH HOH . I 4 HOH A 33 233 155 HOH HOH . I 4 HOH A 34 234 67 HOH HOH . I 4 HOH A 35 235 117 HOH HOH . I 4 HOH A 36 236 66 HOH HOH . I 4 HOH A 37 237 19 HOH HOH . I 4 HOH A 38 238 142 HOH HOH . I 4 HOH A 39 239 51 HOH HOH . I 4 HOH A 40 240 71 HOH HOH . I 4 HOH A 41 241 14 HOH HOH . I 4 HOH A 42 242 103 HOH HOH . I 4 HOH A 43 243 61 HOH HOH . I 4 HOH A 44 244 99 HOH HOH . I 4 HOH A 45 245 151 HOH HOH . I 4 HOH A 46 246 57 HOH HOH . I 4 HOH A 47 247 111 HOH HOH . I 4 HOH A 48 248 28 HOH HOH . I 4 HOH A 49 249 80 HOH HOH . I 4 HOH A 50 250 53 HOH HOH . I 4 HOH A 51 251 40 HOH HOH . I 4 HOH A 52 252 56 HOH HOH . I 4 HOH A 53 253 49 HOH HOH . I 4 HOH A 54 254 122 HOH HOH . I 4 HOH A 55 255 126 HOH HOH . I 4 HOH A 56 256 24 HOH HOH . I 4 HOH A 57 257 130 HOH HOH . I 4 HOH A 58 258 148 HOH HOH . I 4 HOH A 59 259 108 HOH HOH . I 4 HOH A 60 260 76 HOH HOH . I 4 HOH A 61 261 74 HOH HOH . I 4 HOH A 62 262 139 HOH HOH . I 4 HOH A 63 263 84 HOH HOH . I 4 HOH A 64 264 20 HOH HOH . I 4 HOH A 65 265 129 HOH HOH . I 4 HOH A 66 266 121 HOH HOH . I 4 HOH A 67 267 116 HOH HOH . I 4 HOH A 68 268 97 HOH HOH . I 4 HOH A 69 269 104 HOH HOH . I 4 HOH A 70 270 83 HOH HOH . I 4 HOH A 71 271 86 HOH HOH . I 4 HOH A 72 272 152 HOH HOH . J 4 HOH B 1 201 136 HOH HOH . J 4 HOH B 2 202 141 HOH HOH . J 4 HOH B 3 203 158 HOH HOH . J 4 HOH B 4 204 22 HOH HOH . J 4 HOH B 5 205 39 HOH HOH . J 4 HOH B 6 206 69 HOH HOH . J 4 HOH B 7 207 7 HOH HOH . J 4 HOH B 8 208 70 HOH HOH . J 4 HOH B 9 209 140 HOH HOH . J 4 HOH B 10 210 48 HOH HOH . J 4 HOH B 11 211 73 HOH HOH . J 4 HOH B 12 212 62 HOH HOH . J 4 HOH B 13 213 154 HOH HOH . J 4 HOH B 14 214 135 HOH HOH . J 4 HOH B 15 215 102 HOH HOH . J 4 HOH B 16 216 157 HOH HOH . J 4 HOH B 17 217 33 HOH HOH . J 4 HOH B 18 218 18 HOH HOH . J 4 HOH B 19 219 34 HOH HOH . J 4 HOH B 20 220 81 HOH HOH . J 4 HOH B 21 221 8 HOH HOH . J 4 HOH B 22 222 9 HOH HOH . J 4 HOH B 23 223 1 HOH HOH . J 4 HOH B 24 224 55 HOH HOH . J 4 HOH B 25 225 21 HOH HOH . J 4 HOH B 26 226 15 HOH HOH . J 4 HOH B 27 227 35 HOH HOH . J 4 HOH B 28 228 72 HOH HOH . J 4 HOH B 29 229 25 HOH HOH . J 4 HOH B 30 230 11 HOH HOH . J 4 HOH B 31 231 5 HOH HOH . J 4 HOH B 32 232 43 HOH HOH . J 4 HOH B 33 233 10 HOH HOH . J 4 HOH B 34 234 29 HOH HOH . J 4 HOH B 35 235 46 HOH HOH . J 4 HOH B 36 236 94 HOH HOH . J 4 HOH B 37 237 85 HOH HOH . J 4 HOH B 38 238 118 HOH HOH . J 4 HOH B 39 239 114 HOH HOH . J 4 HOH B 40 240 60 HOH HOH . J 4 HOH B 41 241 59 HOH HOH . J 4 HOH B 42 242 52 HOH HOH . J 4 HOH B 43 243 54 HOH HOH . J 4 HOH B 44 244 145 HOH HOH . J 4 HOH B 45 245 13 HOH HOH . J 4 HOH B 46 246 138 HOH HOH . J 4 HOH B 47 247 144 HOH HOH . J 4 HOH B 48 248 12 HOH HOH . J 4 HOH B 49 249 77 HOH HOH . J 4 HOH B 50 250 82 HOH HOH . J 4 HOH B 51 251 36 HOH HOH . J 4 HOH B 52 252 32 HOH HOH . J 4 HOH B 53 253 123 HOH HOH . J 4 HOH B 54 254 120 HOH HOH . J 4 HOH B 55 255 41 HOH HOH . J 4 HOH B 56 256 156 HOH HOH . J 4 HOH B 57 257 2 HOH HOH . J 4 HOH B 58 258 119 HOH HOH . J 4 HOH B 59 259 42 HOH HOH . J 4 HOH B 60 260 90 HOH HOH . J 4 HOH B 61 261 26 HOH HOH . J 4 HOH B 62 262 50 HOH HOH . J 4 HOH B 63 263 75 HOH HOH . J 4 HOH B 64 264 37 HOH HOH . J 4 HOH B 65 265 113 HOH HOH . J 4 HOH B 66 266 64 HOH HOH . J 4 HOH B 67 267 124 HOH HOH . J 4 HOH B 68 268 101 HOH HOH . J 4 HOH B 69 269 109 HOH HOH . J 4 HOH B 70 270 95 HOH HOH . J 4 HOH B 71 271 45 HOH HOH . J 4 HOH B 72 272 65 HOH HOH . J 4 HOH B 73 273 110 HOH HOH . J 4 HOH B 74 274 78 HOH HOH . J 4 HOH B 75 275 44 HOH HOH . J 4 HOH B 76 276 31 HOH HOH . J 4 HOH B 77 277 93 HOH HOH . J 4 HOH B 78 278 112 HOH HOH . J 4 HOH B 79 279 92 HOH HOH . J 4 HOH B 80 280 91 HOH HOH . J 4 HOH B 81 281 58 HOH HOH . J 4 HOH B 82 282 127 HOH HOH . J 4 HOH B 83 283 89 HOH HOH . J 4 HOH B 84 284 87 HOH HOH . J 4 HOH B 85 285 134 HOH HOH . J 4 HOH B 86 286 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 CN4 . . . E 2 -14.748 19.214 -5.602 1 19.65 ? C2 CN4 101 B 1 HETATM 2 C C3 CN4 . . . E 2 -15.283 20.618 -5.318 1 19.42 ? C3 CN4 101 B 1 HETATM 3 C C5 CN4 . . . E 2 -18.697 18.264 -5.468 1 20.82 ? C5 CN4 101 B 1 HETATM 4 C C7 CN4 . . . E 2 -14.35 21.437 -4.425 1 18.28 ? C7 CN4 101 B 1 HETATM 5 C C9 CN4 . . . E 2 -13.811 23.733 -3.5 1 16.55 ? C9 CN4 101 B 1 HETATM 6 C C10 CN4 . . . E 2 -14.054 23.745 -2.139 1 18.66 ? C10 CN4 101 B 1 HETATM 7 C C11 CN4 . . . E 2 -13.29 24.433 -1.225 1 18.46 ? C11 CN4 101 B 1 HETATM 8 C C12 CN4 . . . E 2 -12.2 25.155 -1.683 1 16.32 ? C12 CN4 101 B 1 HETATM 9 C C13 CN4 . . . E 2 -11.89 25.186 -3.034 1 17.25 ? C13 CN4 101 B 1 HETATM 10 C C15 CN4 . . . E 2 -11.23 23.94 -5.823 1 18.75 ? C15 CN4 101 B 1 HETATM 11 C C18 CN4 . . . E 2 -12.219 22.282 -8.303 1 19.34 ? C18 CN4 101 B 1 HETATM 12 C C20 CN4 . . . E 2 -14.478 22.345 -9.171 1 25.97 ? C20 CN4 101 B 1 HETATM 13 C C21 CN4 . . . E 2 -14.574 21.001 -8.93 1 25.82 ? C21 CN4 101 B 1 HETATM 14 C C22 CN4 . . . E 2 -13.555 20.268 -8.386 1 22.82 ? C22 CN4 101 B 1 HETATM 15 F F2 CN4 . . . E 2 -15.101 23.013 -1.691 1 20.4 ? F2 CN4 101 B 1 HETATM 16 C C14 CN4 . . . E 2 -12.692 24.484 -3.94 1 17.39 ? C14 CN4 101 B 1 HETATM 17 N N2 CN4 . . . E 2 -12.351 24.497 -5.322 1 17.6 ? N2 CN4 101 B 1 HETATM 18 O O2 CN4 . . . E 2 -10.45 23.27 -5.149 1 17.08 ? O2 CN4 101 B 1 HETATM 19 C C16 CN4 . . . E 2 -10.952 24.257 -7.282 1 18.4 ? C16 CN4 101 B 1 HETATM 20 C C17 CN4 . . . E 2 -10.865 22.94 -8.074 1 18.83 ? C17 CN4 101 B 1 HETATM 21 C C24 CN4 . . . E 2 -10.144 23.096 -9.407 1 24.99 ? C24 CN4 101 B 1 HETATM 22 C C29 CN4 . . . E 2 -9.19 22.165 -9.806 1 27.24 ? C29 CN4 101 B 1 HETATM 23 C C28 CN4 . . . E 2 -8.596 22.241 -11.056 1 31.4 ? C28 CN4 101 B 1 HETATM 24 C C27 CN4 . . . E 2 -8.966 23.267 -11.889 1 33.88 ? C27 CN4 101 B 1 HETATM 25 F F1 CN4 . . . E 2 -8.359 23.373 -13.102 1 38.96 ? F1 CN4 101 B 1 HETATM 26 C C26 CN4 . . . E 2 -9.901 24.208 -11.542 1 33.14 ? C26 CN4 101 B 1 HETATM 27 C C25 CN4 . . . E 2 -10.486 24.118 -10.29 1 29.14 ? C25 CN4 101 B 1 HETATM 28 C C23 CN4 . . . E 2 -12.374 20.921 -8.068 1 20.18 ? C23 CN4 101 B 1 HETATM 29 F F CN4 . . . E 2 -15.738 20.367 -9.235 1 33.88 ? F CN4 101 B 1 HETATM 30 C C19 CN4 . . . E 2 -13.292 22.986 -8.848 1 21.6 ? C19 CN4 101 B 1 HETATM 31 C C8 CN4 . . . E 2 -14.68 22.933 -4.451 1 16.99 ? C8 CN4 101 B 1 HETATM 32 N N CN4 . . . E 2 -15.038 18.281 -4.471 1 19.45 1 N CN4 101 B 1 HETATM 33 N N1 CN4 . . . E 2 -16.68 20.48 -4.813 1 18.01 ? N1 CN4 101 B 1 HETATM 34 C C CN4 . . . E 2 -16.85 19.76 -3.527 1 18.18 ? C CN4 101 B 1 HETATM 35 S S CN4 . . . E 2 -17.952 20.892 -5.735 1 19.95 ? S CN4 101 B 1 HETATM 36 O O CN4 . . . E 2 -17.516 21.756 -6.785 1 22.07 ? O CN4 101 B 1 HETATM 37 O O1 CN4 . . . E 2 -19.008 21.251 -4.849 1 17.32 ? O1 CN4 101 B 1 HETATM 38 C C4 CN4 . . . E 2 -18.395 19.378 -6.455 1 21.46 ? C4 CN4 101 B 1 HETATM 39 C C6 CN4 . . . E 2 -17.47 17.563 -4.893 1 21.58 ? C6 CN4 101 B 1 HETATM 40 C C1 CN4 . . . E 2 -16.51 18.311 -3.911 1 19.26 ? C1 CN4 101 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #