data_6B3I
#
_model_server_result.job_id            spNTsQIOmj0STFTaLpf8LA 
_model_server_result.datetime_utc      '2024-11-05 01:23:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b3i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":403}' 
#
_entry.id    6B3I 
#
_exptl.entry_id    6B3I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.02 
_cell.angle_gamma         90 
_cell.entry_id            6B3I 
_cell.length_a            190.623 
_cell.length_b            93.815 
_cell.length_c            94.858 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B3I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,J,K 1 1 
C,H,I,L 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -26.178236 0 91.17423 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 269 A CYS 242 1_555 A SG CYS 273 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 C SG CYS 269 C CYS 242 1_555 C SG CYS 273 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6B3I 
_atom_sites.fract_transf_matrix[1][1]    0.005246 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001506 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010659 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010968 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 EDO A 1 401 1 EDO EDO . 
E 2 EDO B 1 401 11 EDO EDO . 
F 2 EDO B 1 402 12 EDO EDO . 
G 2 EDO B 1 403 13 EDO EDO . 
H 2 EDO C 1 401 21 EDO EDO . 
I 2 EDO C 1 402 22 EDO EDO . 
J 3 HOH A 1 501 33 HOH HOH . 
J 3 HOH A 2 502 44 HOH HOH . 
J 3 HOH A 3 503 35 HOH HOH . 
J 3 HOH A 4 504 12 HOH HOH . 
J 3 HOH A 5 505 29 HOH HOH . 
J 3 HOH A 6 506 45 HOH HOH . 
J 3 HOH A 7 507 10 HOH HOH . 
J 3 HOH A 8 508 51 HOH HOH . 
J 3 HOH A 9 509 57 HOH HOH . 
J 3 HOH A 10 510 62 HOH HOH . 
J 3 HOH A 11 511 32 HOH HOH . 
K 3 HOH B 1 501 36 HOH HOH . 
K 3 HOH B 2 502 3 HOH HOH . 
K 3 HOH B 3 503 2 HOH HOH . 
K 3 HOH B 4 504 8 HOH HOH . 
K 3 HOH B 5 505 46 HOH HOH . 
K 3 HOH B 6 506 23 HOH HOH . 
K 3 HOH B 7 507 61 HOH HOH . 
K 3 HOH B 8 508 59 HOH HOH . 
K 3 HOH B 9 509 37 HOH HOH . 
K 3 HOH B 10 510 34 HOH HOH . 
K 3 HOH B 11 511 27 HOH HOH . 
K 3 HOH B 12 512 56 HOH HOH . 
K 3 HOH B 13 513 55 HOH HOH . 
K 3 HOH B 14 514 58 HOH HOH . 
K 3 HOH B 15 515 13 HOH HOH . 
K 3 HOH B 16 516 40 HOH HOH . 
K 3 HOH B 17 517 16 HOH HOH . 
K 3 HOH B 18 518 31 HOH HOH . 
K 3 HOH B 19 519 6 HOH HOH . 
K 3 HOH B 20 520 9 HOH HOH . 
K 3 HOH B 21 521 50 HOH HOH . 
K 3 HOH B 22 522 64 HOH HOH . 
K 3 HOH B 23 523 17 HOH HOH . 
K 3 HOH B 24 524 53 HOH HOH . 
K 3 HOH B 25 525 21 HOH HOH . 
K 3 HOH B 26 526 11 HOH HOH . 
K 3 HOH B 27 527 19 HOH HOH . 
K 3 HOH B 28 528 38 HOH HOH . 
K 3 HOH B 29 529 18 HOH HOH . 
K 3 HOH B 30 530 48 HOH HOH . 
K 3 HOH B 31 531 30 HOH HOH . 
K 3 HOH B 32 532 54 HOH HOH . 
K 3 HOH B 33 533 22 HOH HOH . 
L 3 HOH C 1 501 65 HOH HOH . 
L 3 HOH C 2 502 5 HOH HOH . 
L 3 HOH C 3 503 7 HOH HOH . 
L 3 HOH C 4 504 39 HOH HOH . 
L 3 HOH C 5 505 60 HOH HOH . 
L 3 HOH C 6 506 25 HOH HOH . 
L 3 HOH C 7 507 52 HOH HOH . 
L 3 HOH C 8 508 42 HOH HOH . 
L 3 HOH C 9 509 4 HOH HOH . 
L 3 HOH C 10 510 20 HOH HOH . 
L 3 HOH C 11 511 24 HOH HOH . 
L 3 HOH C 12 512 15 HOH HOH . 
L 3 HOH C 13 513 14 HOH HOH . 
L 3 HOH C 14 514 66 HOH HOH . 
L 3 HOH C 15 515 63 HOH HOH . 
L 3 HOH C 16 516 1 HOH HOH . 
L 3 HOH C 17 517 26 HOH HOH . 
L 3 HOH C 18 518 41 HOH HOH . 
L 3 HOH C 19 519 49 HOH HOH . 
L 3 HOH C 20 520 47 HOH HOH . 
L 3 HOH C 21 521 43 HOH HOH . 
L 3 HOH C 22 522 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 2 38.992 -4.121 0.446 1 97.61 ? C1 EDO 403 B 1 
HETATM 2 O O1 EDO . . . G 2 39.544 -3.66 1.685 1 111.69 ? O1 EDO 403 B 1 
HETATM 3 C C2 EDO . . . G 2 37.513 -4.442 0.63 1 88.22 ? C2 EDO 403 B 1 
HETATM 4 O O2 EDO . . . G 2 37.021 -5.102 -0.541 1 83.44 ? O2 EDO 403 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#