data_6B3L # _model_server_result.job_id pTMN2W3yCveYMz7-E9-pWA _model_server_result.datetime_utc '2025-01-07 15:04:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6B3L # _exptl.entry_id 6B3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B3L _cell.length_a 99.91 _cell.length_b 99.91 _cell.length_c 99.91 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -49.955 49.955 99.91 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 49.955 99.91 49.955 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 32 A ILE 32 1_555 A N CME 33 A CME 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C CME 33 A CME 33 1_555 A N GLY 34 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 104 n n S C1 DMS sing 105 n n S C2 DMS sing 106 n n C1 H11 DMS sing 107 n n C1 H12 DMS sing 108 n n C1 H13 DMS sing 109 n n C2 H21 DMS sing 110 n n C2 H22 DMS sing 111 n n C2 H23 DMS sing 112 n n # _atom_sites.entry_id 6B3L _atom_sites.fract_transf_matrix[1][1] 0.010009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 3 DMS DMS . C 2 DMS A 1 302 4 DMS DMS . D 2 DMS A 1 303 5 DMS DMS . E 2 DMS A 1 304 6 DMS DMS . F 2 DMS A 1 305 7 DMS DMS . G 2 DMS A 1 306 11 DMS DMS . H 3 XM0 A 1 307 1 XM0 FRG . I 4 HOH A 1 401 182 HOH HOH . I 4 HOH A 2 402 127 HOH HOH . I 4 HOH A 3 403 202 HOH HOH . I 4 HOH A 4 404 137 HOH HOH . I 4 HOH A 5 405 155 HOH HOH . I 4 HOH A 6 406 53 HOH HOH . I 4 HOH A 7 407 266 HOH HOH . I 4 HOH A 8 408 63 HOH HOH . I 4 HOH A 9 409 152 HOH HOH . I 4 HOH A 10 410 62 HOH HOH . I 4 HOH A 11 411 222 HOH HOH . I 4 HOH A 12 412 168 HOH HOH . I 4 HOH A 13 413 28 HOH HOH . I 4 HOH A 14 414 24 HOH HOH . I 4 HOH A 15 415 231 HOH HOH . I 4 HOH A 16 416 209 HOH HOH . I 4 HOH A 17 417 122 HOH HOH . I 4 HOH A 18 418 75 HOH HOH . I 4 HOH A 19 419 253 HOH HOH . I 4 HOH A 20 420 147 HOH HOH . I 4 HOH A 21 421 100 HOH HOH . I 4 HOH A 22 422 6 HOH HOH . I 4 HOH A 23 423 160 HOH HOH . I 4 HOH A 24 424 16 HOH HOH . I 4 HOH A 25 425 101 HOH HOH . I 4 HOH A 26 426 78 HOH HOH . I 4 HOH A 27 427 39 HOH HOH . I 4 HOH A 28 428 119 HOH HOH . I 4 HOH A 29 429 80 HOH HOH . I 4 HOH A 30 430 26 HOH HOH . I 4 HOH A 31 431 246 HOH HOH . I 4 HOH A 32 432 233 HOH HOH . I 4 HOH A 33 433 61 HOH HOH . I 4 HOH A 34 434 106 HOH HOH . I 4 HOH A 35 435 38 HOH HOH . I 4 HOH A 36 436 82 HOH HOH . I 4 HOH A 37 437 2 HOH HOH . I 4 HOH A 38 438 50 HOH HOH . I 4 HOH A 39 439 187 HOH HOH . I 4 HOH A 40 440 52 HOH HOH . I 4 HOH A 41 441 113 HOH HOH . I 4 HOH A 42 442 133 HOH HOH . I 4 HOH A 43 443 37 HOH HOH . I 4 HOH A 44 444 154 HOH HOH . I 4 HOH A 45 445 51 HOH HOH . I 4 HOH A 46 446 194 HOH HOH . I 4 HOH A 47 447 19 HOH HOH . I 4 HOH A 48 448 170 HOH HOH . I 4 HOH A 49 449 74 HOH HOH . I 4 HOH A 50 450 4 HOH HOH . I 4 HOH A 51 451 108 HOH HOH . I 4 HOH A 52 452 257 HOH HOH . I 4 HOH A 53 453 156 HOH HOH . I 4 HOH A 54 454 151 HOH HOH . I 4 HOH A 55 455 11 HOH HOH . I 4 HOH A 56 456 79 HOH HOH . I 4 HOH A 57 457 7 HOH HOH . I 4 HOH A 58 458 22 HOH HOH . I 4 HOH A 59 459 191 HOH HOH . I 4 HOH A 60 460 248 HOH HOH . I 4 HOH A 61 461 118 HOH HOH . I 4 HOH A 62 462 48 HOH HOH . I 4 HOH A 63 463 258 HOH HOH . I 4 HOH A 64 464 72 HOH HOH . I 4 HOH A 65 465 174 HOH HOH . I 4 HOH A 66 466 86 HOH HOH . I 4 HOH A 67 467 15 HOH HOH . I 4 HOH A 68 468 47 HOH HOH . I 4 HOH A 69 469 173 HOH HOH . I 4 HOH A 70 470 109 HOH HOH . I 4 HOH A 71 471 98 HOH HOH . I 4 HOH A 72 472 23 HOH HOH . I 4 HOH A 73 473 49 HOH HOH . I 4 HOH A 74 474 120 HOH HOH . I 4 HOH A 75 475 112 HOH HOH . I 4 HOH A 76 476 225 HOH HOH . I 4 HOH A 77 477 66 HOH HOH . I 4 HOH A 78 478 125 HOH HOH . I 4 HOH A 79 479 134 HOH HOH . I 4 HOH A 80 480 56 HOH HOH . I 4 HOH A 81 481 276 HOH HOH . I 4 HOH A 82 482 13 HOH HOH . I 4 HOH A 83 483 150 HOH HOH . I 4 HOH A 84 484 210 HOH HOH . I 4 HOH A 85 485 25 HOH HOH . I 4 HOH A 86 486 169 HOH HOH . I 4 HOH A 87 487 1 HOH HOH . I 4 HOH A 88 488 116 HOH HOH . I 4 HOH A 89 489 3 HOH HOH . I 4 HOH A 90 490 42 HOH HOH . I 4 HOH A 91 491 9 HOH HOH . I 4 HOH A 92 492 105 HOH HOH . I 4 HOH A 93 493 249 HOH HOH . I 4 HOH A 94 494 254 HOH HOH . I 4 HOH A 95 495 96 HOH HOH . I 4 HOH A 96 496 135 HOH HOH . I 4 HOH A 97 497 140 HOH HOH . I 4 HOH A 98 498 261 HOH HOH . I 4 HOH A 99 499 184 HOH HOH . I 4 HOH A 100 500 176 HOH HOH . I 4 HOH A 101 501 88 HOH HOH . I 4 HOH A 102 502 99 HOH HOH . I 4 HOH A 103 503 193 HOH HOH . I 4 HOH A 104 504 195 HOH HOH . I 4 HOH A 105 505 17 HOH HOH . I 4 HOH A 106 506 5 HOH HOH . I 4 HOH A 107 507 107 HOH HOH . I 4 HOH A 108 508 8 HOH HOH . I 4 HOH A 109 509 131 HOH HOH . I 4 HOH A 110 510 60 HOH HOH . I 4 HOH A 111 511 41 HOH HOH . I 4 HOH A 112 512 196 HOH HOH . I 4 HOH A 113 513 87 HOH HOH . I 4 HOH A 114 514 18 HOH HOH . I 4 HOH A 115 515 33 HOH HOH . I 4 HOH A 116 516 217 HOH HOH . I 4 HOH A 117 517 97 HOH HOH . I 4 HOH A 118 518 159 HOH HOH . I 4 HOH A 119 519 55 HOH HOH . I 4 HOH A 120 520 40 HOH HOH . I 4 HOH A 121 521 243 HOH HOH . I 4 HOH A 122 522 130 HOH HOH . I 4 HOH A 123 523 115 HOH HOH . I 4 HOH A 124 524 76 HOH HOH . I 4 HOH A 125 525 68 HOH HOH . I 4 HOH A 126 526 35 HOH HOH . I 4 HOH A 127 527 31 HOH HOH . I 4 HOH A 128 528 59 HOH HOH . I 4 HOH A 129 529 54 HOH HOH . I 4 HOH A 130 530 57 HOH HOH . I 4 HOH A 131 531 12 HOH HOH . I 4 HOH A 132 532 46 HOH HOH . I 4 HOH A 133 533 207 HOH HOH . I 4 HOH A 134 534 10 HOH HOH . I 4 HOH A 135 535 91 HOH HOH . I 4 HOH A 136 536 144 HOH HOH . I 4 HOH A 137 537 20 HOH HOH . I 4 HOH A 138 538 71 HOH HOH . I 4 HOH A 139 539 198 HOH HOH . I 4 HOH A 140 540 171 HOH HOH . I 4 HOH A 141 541 92 HOH HOH . I 4 HOH A 142 542 21 HOH HOH . I 4 HOH A 143 543 65 HOH HOH . I 4 HOH A 144 544 129 HOH HOH . I 4 HOH A 145 545 111 HOH HOH . I 4 HOH A 146 546 29 HOH HOH . I 4 HOH A 147 547 36 HOH HOH . I 4 HOH A 148 548 215 HOH HOH . I 4 HOH A 149 549 141 HOH HOH . I 4 HOH A 150 550 162 HOH HOH . I 4 HOH A 151 551 192 HOH HOH . I 4 HOH A 152 552 43 HOH HOH . I 4 HOH A 153 553 274 HOH HOH . I 4 HOH A 154 554 148 HOH HOH . I 4 HOH A 155 555 272 HOH HOH . I 4 HOH A 156 556 64 HOH HOH . I 4 HOH A 157 557 45 HOH HOH . I 4 HOH A 158 558 32 HOH HOH . I 4 HOH A 159 559 58 HOH HOH . I 4 HOH A 160 560 44 HOH HOH . I 4 HOH A 161 561 67 HOH HOH . I 4 HOH A 162 562 190 HOH HOH . I 4 HOH A 163 563 70 HOH HOH . I 4 HOH A 164 564 84 HOH HOH . I 4 HOH A 165 565 34 HOH HOH . I 4 HOH A 166 566 197 HOH HOH . I 4 HOH A 167 567 188 HOH HOH . I 4 HOH A 168 568 157 HOH HOH . I 4 HOH A 169 569 218 HOH HOH . I 4 HOH A 170 570 69 HOH HOH . I 4 HOH A 171 571 83 HOH HOH . I 4 HOH A 172 572 203 HOH HOH . I 4 HOH A 173 573 126 HOH HOH . I 4 HOH A 174 574 227 HOH HOH . I 4 HOH A 175 575 252 HOH HOH . I 4 HOH A 176 576 216 HOH HOH . I 4 HOH A 177 577 117 HOH HOH . I 4 HOH A 178 578 93 HOH HOH . I 4 HOH A 179 579 103 HOH HOH . I 4 HOH A 180 580 27 HOH HOH . I 4 HOH A 181 581 14 HOH HOH . I 4 HOH A 182 582 232 HOH HOH . I 4 HOH A 183 583 228 HOH HOH . I 4 HOH A 184 584 165 HOH HOH . I 4 HOH A 185 585 277 HOH HOH . I 4 HOH A 186 586 95 HOH HOH . I 4 HOH A 187 587 123 HOH HOH . I 4 HOH A 188 588 242 HOH HOH . I 4 HOH A 189 589 273 HOH HOH . I 4 HOH A 190 590 139 HOH HOH . I 4 HOH A 191 591 206 HOH HOH . I 4 HOH A 192 592 220 HOH HOH . I 4 HOH A 193 593 275 HOH HOH . I 4 HOH A 194 594 136 HOH HOH . I 4 HOH A 195 595 158 HOH HOH . I 4 HOH A 196 596 114 HOH HOH . I 4 HOH A 197 597 104 HOH HOH . I 4 HOH A 198 598 183 HOH HOH . I 4 HOH A 199 599 223 HOH HOH . I 4 HOH A 200 600 138 HOH HOH . I 4 HOH A 201 601 181 HOH HOH . I 4 HOH A 202 602 239 HOH HOH . I 4 HOH A 203 603 211 HOH HOH . I 4 HOH A 204 604 166 HOH HOH . I 4 HOH A 205 605 172 HOH HOH . I 4 HOH A 206 606 263 HOH HOH . I 4 HOH A 207 607 214 HOH HOH . I 4 HOH A 208 608 124 HOH HOH . I 4 HOH A 209 609 240 HOH HOH . I 4 HOH A 210 610 90 HOH HOH . I 4 HOH A 211 611 200 HOH HOH . I 4 HOH A 212 612 199 HOH HOH . I 4 HOH A 213 613 213 HOH HOH . I 4 HOH A 214 614 270 HOH HOH . I 4 HOH A 215 615 167 HOH HOH . I 4 HOH A 216 616 235 HOH HOH . I 4 HOH A 217 617 238 HOH HOH . I 4 HOH A 218 618 153 HOH HOH . I 4 HOH A 219 619 267 HOH HOH . I 4 HOH A 220 620 221 HOH HOH . I 4 HOH A 221 621 30 HOH HOH . I 4 HOH A 222 622 245 HOH HOH . I 4 HOH A 223 623 149 HOH HOH . I 4 HOH A 224 624 89 HOH HOH . I 4 HOH A 225 625 180 HOH HOH . I 4 HOH A 226 626 161 HOH HOH . I 4 HOH A 227 627 204 HOH HOH . I 4 HOH A 228 628 226 HOH HOH . I 4 HOH A 229 629 177 HOH HOH . I 4 HOH A 230 630 85 HOH HOH . I 4 HOH A 231 631 189 HOH HOH . I 4 HOH A 232 632 163 HOH HOH . I 4 HOH A 233 633 110 HOH HOH . I 4 HOH A 234 634 143 HOH HOH . I 4 HOH A 235 635 219 HOH HOH . I 4 HOH A 236 636 132 HOH HOH . I 4 HOH A 237 637 260 HOH HOH . I 4 HOH A 238 638 230 HOH HOH . I 4 HOH A 239 639 145 HOH HOH . I 4 HOH A 240 640 175 HOH HOH . I 4 HOH A 241 641 268 HOH HOH . I 4 HOH A 242 642 234 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 2 -2.244 12.256 26.291 1 44.57 ? S DMS 304 A 1 HETATM 2 O O DMS . . . E 2 -3.51 12.852 26.831 1 42.94 ? O DMS 304 A 1 HETATM 3 C C1 DMS . . . E 2 -2.486 11.896 24.531 1 44.65 ? C1 DMS 304 A 1 HETATM 4 C C2 DMS . . . E 2 -1.012 13.579 26.117 1 39.97 ? C2 DMS 304 A 1 HETATM 5 H H11 DMS . . . E 2 -2.8 12.775 24.03 1 53.58 ? H11 DMS 304 A 1 HETATM 6 H H12 DMS . . . E 2 -1.576 11.556 24.111 1 53.58 ? H12 DMS 304 A 1 HETATM 7 H H13 DMS . . . E 2 -3.226 11.146 24.423 1 53.58 ? H13 DMS 304 A 1 HETATM 8 H H21 DMS . . . E 2 -0.765 13.959 27.074 1 47.96 ? H21 DMS 304 A 1 HETATM 9 H H22 DMS . . . E 2 -1.412 14.358 25.521 1 47.96 ? H22 DMS 304 A 1 HETATM 10 H H23 DMS . . . E 2 -0.141 13.192 25.655 1 47.96 ? H23 DMS 304 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #