data_6B3T # _model_server_result.job_id v4D9dr3NZzqmpLqPA1dTAA _model_server_result.datetime_utc '2025-01-10 08:18:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6B3T # _exptl.entry_id 6B3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6B3T _cell.length_a 175.547 _cell.length_b 175.547 _cell.length_c 120.722 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1A COA . A COA 501 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc2 B O2A COA . A COA 501 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 B O3A COA . A COA 501 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 B O5A COA . A COA 501 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 117 n y N1A C6A COA doub 118 n y C2A N3A COA doub 119 n y C2A H2A COA sing 120 n n N3A C4A COA sing 121 n y C4A C5A COA doub 122 n y C4A N9A COA sing 123 n y C5A C6A COA sing 124 n y C5A N7A COA sing 125 n y C6A N6A COA sing 126 n n N6A H61A COA sing 127 n n N6A H62A COA sing 128 n n N7A C8A COA doub 129 n y C8A N9A COA sing 130 n y C8A H8A COA sing 131 n n N9A C1B COA sing 132 n n C1B C2B COA sing 133 n n C1B O4B COA sing 134 n n C1B H1B COA sing 135 n n C2B O2B COA sing 136 n n C2B C3B COA sing 137 n n C2B H2B COA sing 138 n n O2B HO2A COA sing 139 n n C3B O3B COA sing 140 n n C3B C4B COA sing 141 n n C3B H3B COA sing 142 n n O3B P3B COA sing 143 n n P3B O7A COA doub 144 n n P3B O8A COA sing 145 n n P3B O9A COA sing 146 n n O8A HOA8 COA sing 147 n n O9A HOA9 COA sing 148 n n C4B O4B COA sing 149 n n C4B C5B COA sing 150 n n C4B H4B COA sing 151 n n C5B O5B COA sing 152 n n C5B H51A COA sing 153 n n C5B H52A COA sing 154 n n O5B P1A COA sing 155 n n P1A O1A COA doub 156 n n P1A O2A COA sing 157 n n P1A O3A COA sing 158 n n O2A HOA2 COA sing 159 n n O3A P2A COA sing 160 n n P2A O4A COA doub 161 n n P2A O5A COA sing 162 n n P2A O6A COA sing 163 n n O5A HOA5 COA sing 164 n n O6A CCP COA sing 165 n n CBP CCP COA sing 166 n n CBP CDP COA sing 167 n n CBP CEP COA sing 168 n n CBP CAP COA sing 169 n n CCP H121 COA sing 170 n n CCP H122 COA sing 171 n n CDP H131 COA sing 172 n n CDP H132 COA sing 173 n n CDP H133 COA sing 174 n n CEP H141 COA sing 175 n n CEP H142 COA sing 176 n n CEP H143 COA sing 177 n n CAP OAP COA sing 178 n n CAP C9P COA sing 179 n n CAP H10 COA sing 180 n n OAP HO1 COA sing 181 n n C9P O9P COA doub 182 n n C9P N8P COA sing 183 n n N8P C7P COA sing 184 n n N8P HN8 COA sing 185 n n C7P C6P COA sing 186 n n C7P H71 COA sing 187 n n C7P H72 COA sing 188 n n C6P C5P COA sing 189 n n C6P H61 COA sing 190 n n C6P H62 COA sing 191 n n C5P O5P COA doub 192 n n C5P N4P COA sing 193 n n N4P C3P COA sing 194 n n N4P HN4 COA sing 195 n n C3P C2P COA sing 196 n n C3P H31 COA sing 197 n n C3P H32 COA sing 198 n n C2P S1P COA sing 199 n n C2P H21 COA sing 200 n n C2P H22 COA sing 201 n n S1P HS1 COA sing 202 n n # _atom_sites.entry_id 6B3T _atom_sites.fract_transf_matrix[1][1] 0.005696 _atom_sites.fract_transf_matrix[1][2] 0.003289 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 500 COA COA . C 3 CJ7 A 1 502 505 CJ7 AS1 . D 4 NA A 1 503 1 NA NA . E 5 SO4 A 1 504 1 SO4 SO4 . F 6 HOH A 1 601 11 HOH HOH . F 6 HOH A 2 602 297 HOH HOH . F 6 HOH A 3 603 67 HOH HOH . F 6 HOH A 4 604 17 HOH HOH . F 6 HOH A 5 605 221 HOH HOH . F 6 HOH A 6 606 308 HOH HOH . F 6 HOH A 7 607 48 HOH HOH . F 6 HOH A 8 608 301 HOH HOH . F 6 HOH A 9 609 250 HOH HOH . F 6 HOH A 10 610 247 HOH HOH . F 6 HOH A 11 611 299 HOH HOH . F 6 HOH A 12 612 223 HOH HOH . F 6 HOH A 13 613 293 HOH HOH . F 6 HOH A 14 614 27 HOH HOH . F 6 HOH A 15 615 83 HOH HOH . F 6 HOH A 16 616 22 HOH HOH . F 6 HOH A 17 617 54 HOH HOH . F 6 HOH A 18 618 81 HOH HOH . F 6 HOH A 19 619 89 HOH HOH . F 6 HOH A 20 620 204 HOH HOH . F 6 HOH A 21 621 168 HOH HOH . F 6 HOH A 22 622 240 HOH HOH . F 6 HOH A 23 623 33 HOH HOH . F 6 HOH A 24 624 201 HOH HOH . F 6 HOH A 25 625 164 HOH HOH . F 6 HOH A 26 626 209 HOH HOH . F 6 HOH A 27 627 166 HOH HOH . F 6 HOH A 28 628 103 HOH HOH . F 6 HOH A 29 629 42 HOH HOH . F 6 HOH A 30 630 207 HOH HOH . F 6 HOH A 31 631 295 HOH HOH . F 6 HOH A 32 632 214 HOH HOH . F 6 HOH A 33 633 3 HOH HOH . F 6 HOH A 34 634 303 HOH HOH . F 6 HOH A 35 635 283 HOH HOH . F 6 HOH A 36 636 7 HOH HOH . F 6 HOH A 37 637 26 HOH HOH . F 6 HOH A 38 638 16 HOH HOH . F 6 HOH A 39 639 21 HOH HOH . F 6 HOH A 40 640 8 HOH HOH . F 6 HOH A 41 641 52 HOH HOH . F 6 HOH A 42 642 10 HOH HOH . F 6 HOH A 43 643 37 HOH HOH . F 6 HOH A 44 644 248 HOH HOH . F 6 HOH A 45 645 246 HOH HOH . F 6 HOH A 46 646 265 HOH HOH . F 6 HOH A 47 647 4 HOH HOH . F 6 HOH A 48 648 185 HOH HOH . F 6 HOH A 49 649 72 HOH HOH . F 6 HOH A 50 650 31 HOH HOH . F 6 HOH A 51 651 310 HOH HOH . F 6 HOH A 52 652 23 HOH HOH . F 6 HOH A 53 653 19 HOH HOH . F 6 HOH A 54 654 229 HOH HOH . F 6 HOH A 55 655 2 HOH HOH . F 6 HOH A 56 656 296 HOH HOH . F 6 HOH A 57 657 28 HOH HOH . F 6 HOH A 58 658 151 HOH HOH . F 6 HOH A 59 659 169 HOH HOH . F 6 HOH A 60 660 253 HOH HOH . F 6 HOH A 61 661 85 HOH HOH . F 6 HOH A 62 662 9 HOH HOH . F 6 HOH A 63 663 159 HOH HOH . F 6 HOH A 64 664 56 HOH HOH . F 6 HOH A 65 665 263 HOH HOH . F 6 HOH A 66 666 29 HOH HOH . F 6 HOH A 67 667 55 HOH HOH . F 6 HOH A 68 668 15 HOH HOH . F 6 HOH A 69 669 284 HOH HOH . F 6 HOH A 70 670 300 HOH HOH . F 6 HOH A 71 671 41 HOH HOH . F 6 HOH A 72 672 46 HOH HOH . F 6 HOH A 73 673 210 HOH HOH . F 6 HOH A 74 674 309 HOH HOH . F 6 HOH A 75 675 194 HOH HOH . F 6 HOH A 76 676 39 HOH HOH . F 6 HOH A 77 677 32 HOH HOH . F 6 HOH A 78 678 224 HOH HOH . F 6 HOH A 79 679 51 HOH HOH . F 6 HOH A 80 680 243 HOH HOH . F 6 HOH A 81 681 87 HOH HOH . F 6 HOH A 82 682 25 HOH HOH . F 6 HOH A 83 683 14 HOH HOH . F 6 HOH A 84 684 143 HOH HOH . F 6 HOH A 85 685 1 HOH HOH . F 6 HOH A 86 686 257 HOH HOH . F 6 HOH A 87 687 126 HOH HOH . F 6 HOH A 88 688 125 HOH HOH . F 6 HOH A 89 689 127 HOH HOH . F 6 HOH A 90 690 312 HOH HOH . F 6 HOH A 91 691 47 HOH HOH . F 6 HOH A 92 692 88 HOH HOH . F 6 HOH A 93 693 119 HOH HOH . F 6 HOH A 94 694 241 HOH HOH . F 6 HOH A 95 695 95 HOH HOH . F 6 HOH A 96 696 307 HOH HOH . F 6 HOH A 97 697 268 HOH HOH . F 6 HOH A 98 698 142 HOH HOH . F 6 HOH A 99 699 262 HOH HOH . F 6 HOH A 100 700 249 HOH HOH . F 6 HOH A 101 701 193 HOH HOH . F 6 HOH A 102 702 219 HOH HOH . F 6 HOH A 103 703 117 HOH HOH . F 6 HOH A 104 704 269 HOH HOH . F 6 HOH A 105 705 150 HOH HOH . F 6 HOH A 106 706 5 HOH HOH . F 6 HOH A 107 707 183 HOH HOH . F 6 HOH A 108 708 128 HOH HOH . F 6 HOH A 109 709 173 HOH HOH . F 6 HOH A 110 710 114 HOH HOH . F 6 HOH A 111 711 220 HOH HOH . F 6 HOH A 112 712 123 HOH HOH . F 6 HOH A 113 713 60 HOH HOH . F 6 HOH A 114 714 58 HOH HOH . F 6 HOH A 115 715 122 HOH HOH . F 6 HOH A 116 716 228 HOH HOH . F 6 HOH A 117 717 66 HOH HOH . F 6 HOH A 118 718 311 HOH HOH . F 6 HOH A 119 719 35 HOH HOH . F 6 HOH A 120 720 217 HOH HOH . F 6 HOH A 121 721 161 HOH HOH . F 6 HOH A 122 722 175 HOH HOH . F 6 HOH A 123 723 238 HOH HOH . F 6 HOH A 124 724 190 HOH HOH . F 6 HOH A 125 725 80 HOH HOH . F 6 HOH A 126 726 153 HOH HOH . F 6 HOH A 127 727 38 HOH HOH . F 6 HOH A 128 728 196 HOH HOH . F 6 HOH A 129 729 149 HOH HOH . F 6 HOH A 130 730 298 HOH HOH . F 6 HOH A 131 731 167 HOH HOH . F 6 HOH A 132 732 144 HOH HOH . F 6 HOH A 133 733 49 HOH HOH . F 6 HOH A 134 734 162 HOH HOH . F 6 HOH A 135 735 191 HOH HOH . F 6 HOH A 136 736 294 HOH HOH . F 6 HOH A 137 737 232 HOH HOH . F 6 HOH A 138 738 305 HOH HOH . F 6 HOH A 139 739 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9A COA . . . B 2 20.774 -26.214 50.469 1 125.17 ? N9A COA 501 A 1 HETATM 2 C C1B COA . . . B 2 21.792 -27.227 50.85 1 125.71 ? C1B COA 501 A 1 HETATM 3 C C2B COA . . . B 2 21.136 -28.487 51.392 1 126 ? C2B COA 501 A 1 HETATM 4 O O2B COA . . . B 2 21.073 -28.442 52.823 1 125.42 ? O2B COA 501 A 1 HETATM 5 C C3B COA . . . B 2 21.994 -29.621 50.857 1 126.21 ? C3B COA 501 A 1 HETATM 6 O O3B COA . . . B 2 22.978 -30.045 51.806 1 127.53 ? O3B COA 501 A 1 HETATM 7 P P3B COA . . . B 2 22.776 -31.294 52.81 1 128.65 ? P3B COA 501 A 1 HETATM 8 O O7A COA . . . B 2 22.27 -32.425 51.945 1 127.85 ? O7A COA 501 A 1 HETATM 9 O O8A COA . . . B 2 21.779 -30.801 53.832 1 128.65 ? O8A COA 501 A 1 HETATM 10 O O9A COA . . . B 2 24.161 -31.523 53.367 1 128.39 ? O9A COA 501 A 1 HETATM 11 C C4B COA . . . B 2 22.678 -29.04 49.619 1 125.27 ? C4B COA 501 A 1 HETATM 12 O O4B COA . . . B 2 22.568 -27.613 49.711 1 125.44 ? O4B COA 501 A 1 HETATM 13 C C5B COA . . . B 2 22.112 -29.54 48.283 1 123.86 ? C5B COA 501 A 1 HETATM 14 O O5B COA . . . B 2 21.39 -28.496 47.611 1 121.51 ? O5B COA 501 A 1 HETATM 15 P P1A COA . . . B 2 19.983 -28.775 46.868 1 119.79 ? P1A COA 501 A 1 HETATM 16 O O1A COA . . . B 2 19.157 -29.62 47.806 1 119.03 ? O1A COA 501 A 1 HETATM 17 O O2A COA . . . B 2 20.334 -29.304 45.496 1 119.1 ? O2A COA 501 A 1 HETATM 18 O O3A COA . . . B 2 19.275 -27.319 46.704 1 118.94 ? O3A COA 501 A 1 HETATM 19 P P2A COA . . . B 2 17.784 -26.991 47.273 1 118.42 ? P2A COA 501 A 1 HETATM 20 O O4A COA . . . B 2 17.912 -26.744 48.759 1 118.09 ? O4A COA 501 A 1 HETATM 21 O O5A COA . . . B 2 16.853 -28.09 46.818 1 117.57 ? O5A COA 501 A 1 HETATM 22 O O6A COA . . . B 2 17.249 -25.631 46.561 1 115.22 ? O6A COA 501 A 1 HETATM 23 C CBP COA . . . B 2 17.92 -23.367 45.947 1 110.11 ? CBP COA 501 A 1 HETATM 24 C CCP COA . . . B 2 17.42 -24.288 47.067 1 112.18 ? CCP COA 501 A 1 HETATM 25 C CDP COA . . . B 2 17.12 -22.088 45.677 1 109.77 ? CDP COA 501 A 1 HETATM 26 C CEP COA . . . B 2 18.94 -24.217 45.123 1 109.42 ? CEP COA 501 A 1 HETATM 27 C CAP COA . . . B 2 18.972 -22.565 46.827 1 108.79 ? CAP COA 501 A 1 HETATM 28 O OAP COA . . . B 2 20.059 -23.348 47.354 1 109.2 ? OAP COA 501 A 1 HETATM 29 C C9P COA . . . B 2 19.642 -21.3 46.303 1 106.6 ? C9P COA 501 A 1 HETATM 30 O O9P COA . . . B 2 20.041 -20.551 47.159 1 105.68 ? O9P COA 501 A 1 HETATM 31 N N8P COA . . . B 2 19.699 -20.845 45.049 1 104.29 ? N8P COA 501 A 1 HETATM 32 C C7P COA . . . B 2 19.866 -19.403 44.901 1 102.47 ? C7P COA 501 A 1 HETATM 33 C C6P COA . . . B 2 19.39 -18.845 43.574 1 100.74 ? C6P COA 501 A 1 HETATM 34 C C5P COA . . . B 2 19.909 -17.431 43.381 1 99.45 ? C5P COA 501 A 1 HETATM 35 O O5P COA . . . B 2 20.182 -16.735 44.35 1 99.45 ? O5P COA 501 A 1 HETATM 36 N N4P COA . . . B 2 20.073 -17.013 42.122 1 97.25 ? N4P COA 501 A 1 HETATM 37 C C3P COA . . . B 2 20.64 -15.716 41.78 1 96.23 ? C3P COA 501 A 1 HETATM 38 C C2P COA . . . B 2 22.167 -15.73 41.71 1 95.13 ? C2P COA 501 A 1 HETATM 39 S S1P COA . . . B 2 22.91 -15.835 43.359 1 94.68 ? S1P COA 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #