data_6B3V # _model_server_result.job_id cjCqhoswLj5QE8aQwCKxwA _model_server_result.datetime_utc '2025-02-24 12:00:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6B3V # _exptl.entry_id 6B3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6B3V _cell.length_a 98.874 _cell.length_b 98.874 _cell.length_c 69.117 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -23.039 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3G ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 B O2B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc3 C MG MG . A MG 502 1_555 G O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 C MG MG . A MG 502 1_555 G O HOH . A HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 C MG MG . A MG 502 1_555 G O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 C MG MG . A MG 502 1_555 G O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 184 n n C1 C2 EDO sing 185 n n C1 H11 EDO sing 186 n n C1 H12 EDO sing 187 n n O1 HO1 EDO sing 188 n n C2 O2 EDO sing 189 n n C2 H21 EDO sing 190 n n C2 H22 EDO sing 191 n n O2 HO2 EDO sing 192 n n # _atom_sites.entry_id 6B3V _atom_sites.fract_transf_matrix[1][1] 0.010114 _atom_sites.fract_transf_matrix[1][2] 0.005839 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 501 ANP ANP . C 3 MG A 1 502 1 MG MG . D 4 EDO A 1 503 1 EDO EDO . E 4 EDO A 1 504 2 EDO EDO . F 5 7DQ A 1 505 1 7DQ LIG . G 6 HOH A 1 601 166 HOH HOH . G 6 HOH A 2 602 72 HOH HOH . G 6 HOH A 3 603 98 HOH HOH . G 6 HOH A 4 604 54 HOH HOH . G 6 HOH A 5 605 46 HOH HOH . G 6 HOH A 6 606 115 HOH HOH . G 6 HOH A 7 607 80 HOH HOH . G 6 HOH A 8 608 110 HOH HOH . G 6 HOH A 9 609 19 HOH HOH . G 6 HOH A 10 610 70 HOH HOH . G 6 HOH A 11 611 136 HOH HOH . G 6 HOH A 12 612 176 HOH HOH . G 6 HOH A 13 613 173 HOH HOH . G 6 HOH A 14 614 113 HOH HOH . G 6 HOH A 15 615 15 HOH HOH . G 6 HOH A 16 616 55 HOH HOH . G 6 HOH A 17 617 159 HOH HOH . G 6 HOH A 18 618 34 HOH HOH . G 6 HOH A 19 619 1 HOH HOH . G 6 HOH A 20 620 14 HOH HOH . G 6 HOH A 21 621 57 HOH HOH . G 6 HOH A 22 622 89 HOH HOH . G 6 HOH A 23 623 134 HOH HOH . G 6 HOH A 24 624 132 HOH HOH . G 6 HOH A 25 625 43 HOH HOH . G 6 HOH A 26 626 44 HOH HOH . G 6 HOH A 27 627 50 HOH HOH . G 6 HOH A 28 628 112 HOH HOH . G 6 HOH A 29 629 39 HOH HOH . G 6 HOH A 30 630 106 HOH HOH . G 6 HOH A 31 631 8 HOH HOH . G 6 HOH A 32 632 4 HOH HOH . G 6 HOH A 33 633 171 HOH HOH . G 6 HOH A 34 634 123 HOH HOH . G 6 HOH A 35 635 150 HOH HOH . G 6 HOH A 36 636 127 HOH HOH . G 6 HOH A 37 637 85 HOH HOH . G 6 HOH A 38 638 129 HOH HOH . G 6 HOH A 39 639 62 HOH HOH . G 6 HOH A 40 640 154 HOH HOH . G 6 HOH A 41 641 74 HOH HOH . G 6 HOH A 42 642 10 HOH HOH . G 6 HOH A 43 643 126 HOH HOH . G 6 HOH A 44 644 13 HOH HOH . G 6 HOH A 45 645 11 HOH HOH . G 6 HOH A 46 646 5 HOH HOH . G 6 HOH A 47 647 31 HOH HOH . G 6 HOH A 48 648 78 HOH HOH . G 6 HOH A 49 649 59 HOH HOH . G 6 HOH A 50 650 23 HOH HOH . G 6 HOH A 51 651 93 HOH HOH . G 6 HOH A 52 652 102 HOH HOH . G 6 HOH A 53 653 7 HOH HOH . G 6 HOH A 54 654 111 HOH HOH . G 6 HOH A 55 655 26 HOH HOH . G 6 HOH A 56 656 163 HOH HOH . G 6 HOH A 57 657 104 HOH HOH . G 6 HOH A 58 658 84 HOH HOH . G 6 HOH A 59 659 152 HOH HOH . G 6 HOH A 60 660 97 HOH HOH . G 6 HOH A 61 661 63 HOH HOH . G 6 HOH A 62 662 69 HOH HOH . G 6 HOH A 63 663 6 HOH HOH . G 6 HOH A 64 664 41 HOH HOH . G 6 HOH A 65 665 141 HOH HOH . G 6 HOH A 66 666 42 HOH HOH . G 6 HOH A 67 667 130 HOH HOH . G 6 HOH A 68 668 40 HOH HOH . G 6 HOH A 69 669 20 HOH HOH . G 6 HOH A 70 670 32 HOH HOH . G 6 HOH A 71 671 160 HOH HOH . G 6 HOH A 72 672 146 HOH HOH . G 6 HOH A 73 673 18 HOH HOH . G 6 HOH A 74 674 73 HOH HOH . G 6 HOH A 75 675 88 HOH HOH . G 6 HOH A 76 676 92 HOH HOH . G 6 HOH A 77 677 27 HOH HOH . G 6 HOH A 78 678 52 HOH HOH . G 6 HOH A 79 679 149 HOH HOH . G 6 HOH A 80 680 148 HOH HOH . G 6 HOH A 81 681 36 HOH HOH . G 6 HOH A 82 682 71 HOH HOH . G 6 HOH A 83 683 139 HOH HOH . G 6 HOH A 84 684 94 HOH HOH . G 6 HOH A 85 685 48 HOH HOH . G 6 HOH A 86 686 12 HOH HOH . G 6 HOH A 87 687 140 HOH HOH . G 6 HOH A 88 688 2 HOH HOH . G 6 HOH A 89 689 66 HOH HOH . G 6 HOH A 90 690 67 HOH HOH . G 6 HOH A 91 691 125 HOH HOH . G 6 HOH A 92 692 75 HOH HOH . G 6 HOH A 93 693 3 HOH HOH . G 6 HOH A 94 694 155 HOH HOH . G 6 HOH A 95 695 16 HOH HOH . G 6 HOH A 96 696 49 HOH HOH . G 6 HOH A 97 697 79 HOH HOH . G 6 HOH A 98 698 145 HOH HOH . G 6 HOH A 99 699 37 HOH HOH . G 6 HOH A 100 700 100 HOH HOH . G 6 HOH A 101 701 28 HOH HOH . G 6 HOH A 102 702 77 HOH HOH . G 6 HOH A 103 703 168 HOH HOH . G 6 HOH A 104 704 25 HOH HOH . G 6 HOH A 105 705 21 HOH HOH . G 6 HOH A 106 706 29 HOH HOH . G 6 HOH A 107 707 56 HOH HOH . G 6 HOH A 108 708 135 HOH HOH . G 6 HOH A 109 709 9 HOH HOH . G 6 HOH A 110 710 82 HOH HOH . G 6 HOH A 111 711 51 HOH HOH . G 6 HOH A 112 712 101 HOH HOH . G 6 HOH A 113 713 64 HOH HOH . G 6 HOH A 114 714 47 HOH HOH . G 6 HOH A 115 715 35 HOH HOH . G 6 HOH A 116 716 151 HOH HOH . G 6 HOH A 117 717 65 HOH HOH . G 6 HOH A 118 718 162 HOH HOH . G 6 HOH A 119 719 76 HOH HOH . G 6 HOH A 120 720 45 HOH HOH . G 6 HOH A 121 721 119 HOH HOH . G 6 HOH A 122 722 86 HOH HOH . G 6 HOH A 123 723 161 HOH HOH . G 6 HOH A 124 724 17 HOH HOH . G 6 HOH A 125 725 147 HOH HOH . G 6 HOH A 126 726 38 HOH HOH . G 6 HOH A 127 727 167 HOH HOH . G 6 HOH A 128 728 60 HOH HOH . G 6 HOH A 129 729 172 HOH HOH . G 6 HOH A 130 730 124 HOH HOH . G 6 HOH A 131 731 22 HOH HOH . G 6 HOH A 132 732 61 HOH HOH . G 6 HOH A 133 733 33 HOH HOH . G 6 HOH A 134 734 118 HOH HOH . G 6 HOH A 135 735 95 HOH HOH . G 6 HOH A 136 736 157 HOH HOH . G 6 HOH A 137 737 107 HOH HOH . G 6 HOH A 138 738 170 HOH HOH . G 6 HOH A 139 739 53 HOH HOH . G 6 HOH A 140 740 153 HOH HOH . G 6 HOH A 141 741 122 HOH HOH . G 6 HOH A 142 742 138 HOH HOH . G 6 HOH A 143 743 103 HOH HOH . G 6 HOH A 144 744 137 HOH HOH . G 6 HOH A 145 745 105 HOH HOH . G 6 HOH A 146 746 58 HOH HOH . G 6 HOH A 147 747 156 HOH HOH . G 6 HOH A 148 748 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -18.343 -13.105 8.869 1 46.42 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . D 4 -17.545 -12.028 8.359 1 59.27 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . D 4 -19.56 -13.311 7.971 1 31.75 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . D 4 -20.372 -12.136 8 1 32.66 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #