data_6B4L
#
_model_server_result.job_id            iob3yG9DNUstLPuQZq6lDQ 
_model_server_result.datetime_utc      '2024-11-25 17:12:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b4l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6B4L 
#
_exptl.entry_id    6B4L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              345.391 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-{3-[(naphthalen-1-yl)oxy]propyl}-1H-indole-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.5 
_cell.angle_gamma         90 
_cell.entry_id            6B4L 
_cell.length_a            46.89 
_cell.length_b            82.929 
_cell.length_c            48 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B4L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H19 N O3' 
_chem_comp.formula_weight    345.391 
_chem_comp.id                CJY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-{3-[(naphthalen-1-yl)oxy]propyl}-1H-indole-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C5 CJY doub 70 n y 
C9 C12 CJY sing 71 n y 
C6 C12 CJY doub 72 n y 
C6 C1 CJY sing 73 n y 
C5 C11 CJY sing 74 n y 
C12 C13 CJY sing 75 n y 
C1 C2 CJY doub 76 n y 
C11 C17 CJY doub 77 n y 
C13 C17 CJY sing 78 n y 
C13 C7 CJY doub 79 n y 
C2 C7 CJY sing 80 n y 
C17 O21 CJY sing 81 n n 
O21 C20 CJY sing 82 n n 
C3 C4 CJY doub 83 n y 
C3 C8 CJY sing 84 n y 
C4 C10 CJY sing 85 n y 
C20 C19 CJY sing 86 n n 
C8 C14 CJY doub 87 n y 
C10 C16 CJY doub 88 n y 
C14 C16 CJY sing 89 n y 
C14 C15 CJY sing 90 n y 
C19 C18 CJY sing 91 n n 
C16 N22 CJY sing 92 n y 
C15 C18 CJY sing 93 n n 
C15 C23 CJY doub 94 n y 
N22 C23 CJY sing 95 n y 
C23 C24 CJY sing 96 n n 
C24 O26 CJY doub 97 n n 
C24 O25 CJY sing 98 n n 
C4 H1 CJY sing 99 n n 
C5 H2 CJY sing 100 n n 
C6 H3 CJY sing 101 n n 
C7 H4 CJY sing 102 n n 
C8 H5 CJY sing 103 n n 
C10 H6 CJY sing 104 n n 
C20 H7 CJY sing 105 n n 
C20 H8 CJY sing 106 n n 
C1 H9 CJY sing 107 n n 
C2 H10 CJY sing 108 n n 
C3 H11 CJY sing 109 n n 
C9 H12 CJY sing 110 n n 
C11 H13 CJY sing 111 n n 
C18 H14 CJY sing 112 n n 
C18 H15 CJY sing 113 n n 
C19 H16 CJY sing 114 n n 
C19 H17 CJY sing 115 n n 
N22 H18 CJY sing 116 n n 
O25 H19 CJY sing 117 n n 
#
_atom_sites.entry_id                     6B4L 
_atom_sites.fract_transf_matrix[1][1]    0.021327 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.011102 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012059 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023487 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CJY A 1 401 1 CJY LIG . 
D 2 CJY B 1 401 1 CJY LIG . 
E 3 HOH A 1 501 70 HOH HOH . 
E 3 HOH A 2 502 50 HOH HOH . 
E 3 HOH A 3 503 58 HOH HOH . 
E 3 HOH A 4 504 39 HOH HOH . 
E 3 HOH A 5 505 75 HOH HOH . 
E 3 HOH A 6 506 76 HOH HOH . 
E 3 HOH A 7 507 36 HOH HOH . 
E 3 HOH A 8 508 83 HOH HOH . 
E 3 HOH A 9 509 94 HOH HOH . 
E 3 HOH A 10 510 103 HOH HOH . 
E 3 HOH A 11 511 43 HOH HOH . 
E 3 HOH A 12 512 22 HOH HOH . 
E 3 HOH A 13 513 47 HOH HOH . 
E 3 HOH A 14 514 19 HOH HOH . 
E 3 HOH A 15 515 81 HOH HOH . 
E 3 HOH A 16 516 98 HOH HOH . 
E 3 HOH A 17 517 108 HOH HOH . 
E 3 HOH A 18 518 27 HOH HOH . 
E 3 HOH A 19 519 107 HOH HOH . 
E 3 HOH A 20 520 104 HOH HOH . 
E 3 HOH A 21 521 91 HOH HOH . 
E 3 HOH A 22 522 65 HOH HOH . 
E 3 HOH A 23 523 119 HOH HOH . 
E 3 HOH A 24 524 64 HOH HOH . 
E 3 HOH A 25 525 106 HOH HOH . 
E 3 HOH A 26 526 21 HOH HOH . 
E 3 HOH A 27 527 122 HOH HOH . 
E 3 HOH A 28 528 73 HOH HOH . 
E 3 HOH A 29 529 95 HOH HOH . 
E 3 HOH A 30 530 114 HOH HOH . 
E 3 HOH A 31 531 16 HOH HOH . 
E 3 HOH A 32 532 55 HOH HOH . 
E 3 HOH A 33 533 113 HOH HOH . 
E 3 HOH A 34 534 37 HOH HOH . 
E 3 HOH A 35 535 7 HOH HOH . 
E 3 HOH A 36 536 96 HOH HOH . 
E 3 HOH A 37 537 20 HOH HOH . 
E 3 HOH A 38 538 118 HOH HOH . 
E 3 HOH A 39 539 71 HOH HOH . 
E 3 HOH A 40 540 105 HOH HOH . 
E 3 HOH A 41 541 78 HOH HOH . 
E 3 HOH A 42 542 120 HOH HOH . 
E 3 HOH A 43 543 59 HOH HOH . 
E 3 HOH A 44 544 110 HOH HOH . 
E 3 HOH A 45 545 112 HOH HOH . 
E 3 HOH A 46 546 35 HOH HOH . 
E 3 HOH A 47 547 109 HOH HOH . 
E 3 HOH A 48 548 67 HOH HOH . 
E 3 HOH A 49 549 99 HOH HOH . 
E 3 HOH A 50 550 121 HOH HOH . 
E 3 HOH A 51 551 111 HOH HOH . 
F 3 HOH B 1 501 23 HOH HOH . 
F 3 HOH B 2 502 89 HOH HOH . 
F 3 HOH B 3 503 74 HOH HOH . 
F 3 HOH B 4 504 53 HOH HOH . 
F 3 HOH B 5 505 32 HOH HOH . 
F 3 HOH B 6 506 63 HOH HOH . 
F 3 HOH B 7 507 57 HOH HOH . 
F 3 HOH B 8 508 13 HOH HOH . 
F 3 HOH B 9 509 85 HOH HOH . 
F 3 HOH B 10 510 80 HOH HOH . 
F 3 HOH B 11 511 72 HOH HOH . 
F 3 HOH B 12 512 12 HOH HOH . 
F 3 HOH B 13 513 10 HOH HOH . 
F 3 HOH B 14 514 60 HOH HOH . 
F 3 HOH B 15 515 102 HOH HOH . 
F 3 HOH B 16 516 117 HOH HOH . 
F 3 HOH B 17 517 62 HOH HOH . 
F 3 HOH B 18 518 38 HOH HOH . 
F 3 HOH B 19 519 87 HOH HOH . 
F 3 HOH B 20 520 88 HOH HOH . 
F 3 HOH B 21 521 18 HOH HOH . 
F 3 HOH B 22 522 69 HOH HOH . 
F 3 HOH B 23 523 17 HOH HOH . 
F 3 HOH B 24 524 56 HOH HOH . 
F 3 HOH B 25 525 116 HOH HOH . 
F 3 HOH B 26 526 54 HOH HOH . 
F 3 HOH B 27 527 42 HOH HOH . 
F 3 HOH B 28 528 48 HOH HOH . 
F 3 HOH B 29 529 77 HOH HOH . 
F 3 HOH B 30 530 92 HOH HOH . 
F 3 HOH B 31 531 100 HOH HOH . 
F 3 HOH B 32 532 82 HOH HOH . 
F 3 HOH B 33 533 14 HOH HOH . 
F 3 HOH B 34 534 68 HOH HOH . 
F 3 HOH B 35 535 46 HOH HOH . 
F 3 HOH B 36 536 90 HOH HOH . 
F 3 HOH B 37 537 115 HOH HOH . 
F 3 HOH B 38 538 26 HOH HOH . 
F 3 HOH B 39 539 31 HOH HOH . 
F 3 HOH B 40 540 40 HOH HOH . 
F 3 HOH B 41 541 101 HOH HOH . 
F 3 HOH B 42 542 44 HOH HOH . 
F 3 HOH B 43 543 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 CJY . . . C 2 13.598 -12.665 13.173 1 43.61 ? C4 CJY 401 A 1 
HETATM 2 C C5 CJY . . . C 2 10.097 -8.929 9.135 1 33.89 ? C5 CJY 401 A 1 
HETATM 3 C C6 CJY . . . C 2 12.038 -5.873 8.737 1 31.83 ? C6 CJY 401 A 1 
HETATM 4 C C7 CJY . . . C 2 11.732 -5.889 11.476 1 27.59 ? C7 CJY 401 A 1 
HETATM 5 C C8 CJY . . . C 2 12.812 -10.398 13.489 1 41.94 ? C8 CJY 401 A 1 
HETATM 6 C C10 CJY . . . C 2 12.738 -13.136 14.141 1 44.5 ? C10 CJY 401 A 1 
HETATM 7 C C13 CJY . . . C 2 11.167 -6.901 10.713 1 30.99 ? C13 CJY 401 A 1 
HETATM 8 C C15 CJY . . . C 2 11.012 -10.206 15.333 1 44.35 ? C15 CJY 401 A 1 
HETATM 9 C C17 CJY . . . C 2 10.446 -7.933 11.292 1 35.83 ? C17 CJY 401 A 1 
HETATM 10 C C20 CJY . . . C 2 9.233 -8.548 13.259 1 37.01 ? C20 CJY 401 A 1 
HETATM 11 C C24 CJY . . . C 2 9.462 -11.094 17.178 1 48.67 ? C24 CJY 401 A 1 
HETATM 12 C C1 CJY . . . C 2 12.604 -4.873 9.509 1 31.43 ? C1 CJY 401 A 1 
HETATM 13 C C2 CJY . . . C 2 12.451 -4.88 10.878 1 27.74 ? C2 CJY 401 A 1 
HETATM 14 C C3 CJY . . . C 2 13.627 -11.322 12.861 1 43.96 ? C3 CJY 401 A 1 
HETATM 15 C C9 CJY . . . C 2 10.797 -7.901 8.55 1 32.16 ? C9 CJY 401 A 1 
HETATM 16 C C11 CJY . . . C 2 9.92 -8.95 10.501 1 35.18 ? C11 CJY 401 A 1 
HETATM 17 C C12 CJY . . . C 2 11.323 -6.891 9.335 1 31.61 ? C12 CJY 401 A 1 
HETATM 18 C C14 CJY . . . C 2 11.949 -10.85 14.473 1 43.56 ? C14 CJY 401 A 1 
HETATM 19 C C16 CJY . . . C 2 11.934 -12.202 14.768 1 44.39 ? C16 CJY 401 A 1 
HETATM 20 C C23 CJY . . . C 2 10.456 -11.188 16.14 1 46.78 ? C23 CJY 401 A 1 
HETATM 21 C C18 CJY . . . C 2 10.707 -8.754 15.344 1 40.24 ? C18 CJY 401 A 1 
HETATM 22 C C19 CJY . . . C 2 9.348 -8.409 14.766 1 38.63 ? C19 CJY 401 A 1 
HETATM 23 N N22 CJY . . . C 2 11.025 -12.379 15.776 1 45.21 ? N22 CJY 401 A 1 
HETATM 24 O O25 CJY . . . C 2 9.032 -10.09 17.725 1 49.42 ? O25 CJY 401 A 1 
HETATM 25 O O26 CJY . . . C 2 9.057 -12.338 17.513 1 50.44 ? O26 CJY 401 A 1 
HETATM 26 O O21 CJY . . . C 2 10.352 -7.889 12.688 1 38.92 ? O21 CJY 401 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#