data_6B4M
#
_model_server_result.job_id            yVcag_GsHHpL7_Atee0gsA 
_model_server_result.datetime_utc      '2025-03-06 02:16:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6B4M 
#
_exptl.entry_id    6B4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.33 
_cell.angle_gamma         90 
_cell.entry_id            6B4M 
_cell.length_a            56.893 
_cell.length_b            79.337 
_cell.length_c            98.373 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 113 A CYS 113 1_555 A SG CYS 122 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
disulf ? disulf2 A SG CYS 131 A CYS 131 1_555 A SG CYS 228 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
disulf ? disulf3 A SG CYS 170 A CYS 170 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 B SG CYS 113 B CYS 113 1_555 B SG CYS 122 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
disulf ? disulf5 B SG CYS 131 B CYS 131 1_555 B SG CYS 228 B CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf6 B SG CYS 170 B CYS 170 1_555 B SG CYS 176 B CYS 176 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A CE MET 291 A MET 291 1_555 B CE MET 291 B MET 291 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.61 ? 
covale ? covale2 A NE2 HIS 317 A HIS 317 1_555 B NE2 HIS 317 B HIS 317 1_455 ? A ? ? A ? ? ? ? ? ? ? 1.309 ? 
covale ? covale3 B ND2 ASN 82 B ASN 82 1_555 G C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6B4M 
_atom_sites.fract_transf_matrix[1][1]    0.017577 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000714 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012604 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010174 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 401 400 NAG NAG . 
D 3 IOD A 1 402 1 IOD IOD . 
E 3 IOD A 1 403 2 IOD IOD . 
F 4 GOL A 1 404 1 GOL GOL . 
G 2 NAG B 1 401 400 NAG NAG . 
H 3 IOD B 1 402 3 IOD IOD . 
I 3 IOD B 1 403 4 IOD IOD . 
J 4 GOL B 1 404 2 GOL GOL . 
K 5 HOH A 1 501 43 HOH HOH . 
K 5 HOH A 2 502 69 HOH HOH . 
K 5 HOH A 3 503 61 HOH HOH . 
K 5 HOH A 4 504 26 HOH HOH . 
K 5 HOH A 5 505 84 HOH HOH . 
K 5 HOH A 6 506 13 HOH HOH . 
K 5 HOH A 7 507 23 HOH HOH . 
K 5 HOH A 8 508 20 HOH HOH . 
K 5 HOH A 9 509 39 HOH HOH . 
K 5 HOH A 10 510 1 HOH HOH . 
K 5 HOH A 11 511 36 HOH HOH . 
K 5 HOH A 12 512 63 HOH HOH . 
K 5 HOH A 13 513 79 HOH HOH . 
K 5 HOH A 14 514 31 HOH HOH . 
K 5 HOH A 15 515 19 HOH HOH . 
K 5 HOH A 16 516 18 HOH HOH . 
K 5 HOH A 17 517 59 HOH HOH . 
K 5 HOH A 18 518 62 HOH HOH . 
K 5 HOH A 19 519 58 HOH HOH . 
K 5 HOH A 20 520 81 HOH HOH . 
K 5 HOH A 21 521 80 HOH HOH . 
K 5 HOH A 22 522 38 HOH HOH . 
K 5 HOH A 23 523 28 HOH HOH . 
K 5 HOH A 24 524 7 HOH HOH . 
K 5 HOH A 25 525 37 HOH HOH . 
K 5 HOH A 26 526 71 HOH HOH . 
K 5 HOH A 27 527 77 HOH HOH . 
K 5 HOH A 28 528 41 HOH HOH . 
K 5 HOH A 29 529 51 HOH HOH . 
K 5 HOH A 30 530 29 HOH HOH . 
K 5 HOH A 31 531 68 HOH HOH . 
K 5 HOH A 32 532 52 HOH HOH . 
K 5 HOH A 33 533 32 HOH HOH . 
K 5 HOH A 34 534 44 HOH HOH . 
K 5 HOH A 35 535 70 HOH HOH . 
K 5 HOH A 36 536 42 HOH HOH . 
K 5 HOH A 37 537 35 HOH HOH . 
K 5 HOH A 38 538 30 HOH HOH . 
K 5 HOH A 39 539 34 HOH HOH . 
L 5 HOH B 1 501 48 HOH HOH . 
L 5 HOH B 2 502 12 HOH HOH . 
L 5 HOH B 3 503 78 HOH HOH . 
L 5 HOH B 4 504 56 HOH HOH . 
L 5 HOH B 5 505 82 HOH HOH . 
L 5 HOH B 6 506 16 HOH HOH . 
L 5 HOH B 7 507 75 HOH HOH . 
L 5 HOH B 8 508 11 HOH HOH . 
L 5 HOH B 9 509 65 HOH HOH . 
L 5 HOH B 10 510 5 HOH HOH . 
L 5 HOH B 11 511 66 HOH HOH . 
L 5 HOH B 12 512 3 HOH HOH . 
L 5 HOH B 13 513 24 HOH HOH . 
L 5 HOH B 14 514 10 HOH HOH . 
L 5 HOH B 15 515 2 HOH HOH . 
L 5 HOH B 16 516 85 HOH HOH . 
L 5 HOH B 17 517 25 HOH HOH . 
L 5 HOH B 18 518 6 HOH HOH . 
L 5 HOH B 19 519 21 HOH HOH . 
L 5 HOH B 20 520 22 HOH HOH . 
L 5 HOH B 21 521 14 HOH HOH . 
L 5 HOH B 22 522 74 HOH HOH . 
L 5 HOH B 23 523 67 HOH HOH . 
L 5 HOH B 24 524 9 HOH HOH . 
L 5 HOH B 25 525 73 HOH HOH . 
L 5 HOH B 26 526 8 HOH HOH . 
L 5 HOH B 27 527 64 HOH HOH . 
L 5 HOH B 28 528 57 HOH HOH . 
L 5 HOH B 29 529 17 HOH HOH . 
L 5 HOH B 30 530 27 HOH HOH . 
L 5 HOH B 31 531 60 HOH HOH . 
L 5 HOH B 32 532 40 HOH HOH . 
L 5 HOH B 33 533 83 HOH HOH . 
L 5 HOH B 34 534 86 HOH HOH . 
L 5 HOH B 35 535 46 HOH HOH . 
L 5 HOH B 36 536 76 HOH HOH . 
L 5 HOH B 37 537 49 HOH HOH . 
L 5 HOH B 38 538 72 HOH HOH . 
L 5 HOH B 39 539 55 HOH HOH . 
L 5 HOH B 40 540 47 HOH HOH . 
L 5 HOH B 41 541 33 HOH HOH . 
L 5 HOH B 42 542 15 HOH HOH . 
L 5 HOH B 43 543 53 HOH HOH . 
L 5 HOH B 44 544 50 HOH HOH . 
L 5 HOH B 45 545 4 HOH HOH . 
L 5 HOH B 46 546 45 HOH HOH . 
L 5 HOH B 47 547 87 HOH HOH . 
L 5 HOH B 48 548 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 -21.085 7.433 -8.773 0.8 73.35 ? C1 NAG 401 A 1 
HETATM 2 C C2 NAG . . . C 2 -20.143 8.476 -8.185 0.8 72.2 ? C2 NAG 401 A 1 
HETATM 3 C C3 NAG . . . C 2 -18.756 7.885 -8.091 0.8 70.96 ? C3 NAG 401 A 1 
HETATM 4 C C4 NAG . . . C 2 -18.787 6.613 -7.251 0.8 72.01 ? C4 NAG 401 A 1 
HETATM 5 C C5 NAG . . . C 2 -19.907 5.675 -7.716 0.8 74.86 ? C5 NAG 401 A 1 
HETATM 6 C C6 NAG . . . C 2 -20.062 4.498 -6.758 0.8 67.98 ? C6 NAG 401 A 1 
HETATM 7 C C7 NAG . . . C 2 -20.373 10.896 -8.516 0.8 70.34 ? C7 NAG 401 A 1 
HETATM 8 C C8 NAG . . . C 2 -20.43 12.024 -9.522 0.8 64.77 ? C8 NAG 401 A 1 
HETATM 9 N N2 NAG . . . C 2 -20.221 9.66 -9.011 0.8 73.23 ? N2 NAG 401 A 1 
HETATM 10 O O3 NAG . . . C 2 -17.868 8.802 -7.452 0.8 72.67 ? O3 NAG 401 A 1 
HETATM 11 O O4 NAG . . . C 2 -17.544 5.898 -7.311 0.8 65.97 ? O4 NAG 401 A 1 
HETATM 12 O O5 NAG . . . C 2 -21.158 6.351 -7.82 0.8 77.95 ? O5 NAG 401 A 1 
HETATM 13 O O6 NAG . . . C 2 -20.462 4.99 -5.48 0.8 60.04 ? O6 NAG 401 A 1 
HETATM 14 O O7 NAG . . . C 2 -20.426 11.113 -7.32 0.8 64.31 ? O7 NAG 401 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#