data_6B4T # _model_server_result.job_id RVWiZCI3iDfgPiHESxULHA _model_server_result.datetime_utc '2024-11-22 17:31:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6B4T # _exptl.entry_id 6B4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B4T _cell.length_a 99.95 _cell.length_b 99.95 _cell.length_c 99.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -49.975 49.975 99.95 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 49.975 99.95 49.975 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 32 A ILE 32 1_555 A N CME 33 A CME 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CME 33 A CME 33 1_555 A N GLY 34 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 119 n n S C1 DMS sing 120 n n S C2 DMS sing 121 n n C1 H11 DMS sing 122 n n C1 H12 DMS sing 123 n n C1 H13 DMS sing 124 n n C2 H21 DMS sing 125 n n C2 H22 DMS sing 126 n n C2 H23 DMS sing 127 n n # _atom_sites.entry_id 6B4T _atom_sites.fract_transf_matrix[1][1] 0.010005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 2 DMS A 1 302 3 DMS DMS . D 2 DMS A 1 303 4 DMS DMS . E 2 DMS A 1 304 5 DMS DMS . F 2 DMS A 1 305 6 DMS DMS . G 2 DMS A 1 306 8 DMS DMS . H 2 DMS A 1 307 9 DMS DMS . I 3 CQJ A 1 308 1 CQJ FRG . J 4 HOH A 1 401 120 HOH HOH . J 4 HOH A 2 402 150 HOH HOH . J 4 HOH A 3 403 209 HOH HOH . J 4 HOH A 4 404 44 HOH HOH . J 4 HOH A 5 405 42 HOH HOH . J 4 HOH A 6 406 196 HOH HOH . J 4 HOH A 7 407 122 HOH HOH . J 4 HOH A 8 408 90 HOH HOH . J 4 HOH A 9 409 70 HOH HOH . J 4 HOH A 10 410 129 HOH HOH . J 4 HOH A 11 411 157 HOH HOH . J 4 HOH A 12 412 83 HOH HOH . J 4 HOH A 13 413 59 HOH HOH . J 4 HOH A 14 414 137 HOH HOH . J 4 HOH A 15 415 181 HOH HOH . J 4 HOH A 16 416 108 HOH HOH . J 4 HOH A 17 417 57 HOH HOH . J 4 HOH A 18 418 41 HOH HOH . J 4 HOH A 19 419 76 HOH HOH . J 4 HOH A 20 420 28 HOH HOH . J 4 HOH A 21 421 96 HOH HOH . J 4 HOH A 22 422 94 HOH HOH . J 4 HOH A 23 423 158 HOH HOH . J 4 HOH A 24 424 132 HOH HOH . J 4 HOH A 25 425 166 HOH HOH . J 4 HOH A 26 426 164 HOH HOH . J 4 HOH A 27 427 84 HOH HOH . J 4 HOH A 28 428 102 HOH HOH . J 4 HOH A 29 429 53 HOH HOH . J 4 HOH A 30 430 2 HOH HOH . J 4 HOH A 31 431 6 HOH HOH . J 4 HOH A 32 432 4 HOH HOH . J 4 HOH A 33 433 48 HOH HOH . J 4 HOH A 34 434 17 HOH HOH . J 4 HOH A 35 435 156 HOH HOH . J 4 HOH A 36 436 145 HOH HOH . J 4 HOH A 37 437 20 HOH HOH . J 4 HOH A 38 438 226 HOH HOH . J 4 HOH A 39 439 50 HOH HOH . J 4 HOH A 40 440 133 HOH HOH . J 4 HOH A 41 441 154 HOH HOH . J 4 HOH A 42 442 3 HOH HOH . J 4 HOH A 43 443 110 HOH HOH . J 4 HOH A 44 444 85 HOH HOH . J 4 HOH A 45 445 190 HOH HOH . J 4 HOH A 46 446 171 HOH HOH . J 4 HOH A 47 447 106 HOH HOH . J 4 HOH A 48 448 24 HOH HOH . J 4 HOH A 49 449 26 HOH HOH . J 4 HOH A 50 450 155 HOH HOH . J 4 HOH A 51 451 43 HOH HOH . J 4 HOH A 52 452 225 HOH HOH . J 4 HOH A 53 453 7 HOH HOH . J 4 HOH A 54 454 219 HOH HOH . J 4 HOH A 55 455 69 HOH HOH . J 4 HOH A 56 456 91 HOH HOH . J 4 HOH A 57 457 161 HOH HOH . J 4 HOH A 58 458 189 HOH HOH . J 4 HOH A 59 459 14 HOH HOH . J 4 HOH A 60 460 9 HOH HOH . J 4 HOH A 61 461 11 HOH HOH . J 4 HOH A 62 462 86 HOH HOH . J 4 HOH A 63 463 184 HOH HOH . J 4 HOH A 64 464 104 HOH HOH . J 4 HOH A 65 465 1 HOH HOH . J 4 HOH A 66 466 186 HOH HOH . J 4 HOH A 67 467 62 HOH HOH . J 4 HOH A 68 468 121 HOH HOH . J 4 HOH A 69 469 73 HOH HOH . J 4 HOH A 70 470 97 HOH HOH . J 4 HOH A 71 471 138 HOH HOH . J 4 HOH A 72 472 185 HOH HOH . J 4 HOH A 73 473 93 HOH HOH . J 4 HOH A 74 474 183 HOH HOH . J 4 HOH A 75 475 25 HOH HOH . J 4 HOH A 76 476 18 HOH HOH . J 4 HOH A 77 477 55 HOH HOH . J 4 HOH A 78 478 64 HOH HOH . J 4 HOH A 79 479 149 HOH HOH . J 4 HOH A 80 480 27 HOH HOH . J 4 HOH A 81 481 68 HOH HOH . J 4 HOH A 82 482 74 HOH HOH . J 4 HOH A 83 483 47 HOH HOH . J 4 HOH A 84 484 100 HOH HOH . J 4 HOH A 85 485 5 HOH HOH . J 4 HOH A 86 486 128 HOH HOH . J 4 HOH A 87 487 135 HOH HOH . J 4 HOH A 88 488 40 HOH HOH . J 4 HOH A 89 489 241 HOH HOH . J 4 HOH A 90 490 250 HOH HOH . J 4 HOH A 91 491 56 HOH HOH . J 4 HOH A 92 492 179 HOH HOH . J 4 HOH A 93 493 16 HOH HOH . J 4 HOH A 94 494 146 HOH HOH . J 4 HOH A 95 495 13 HOH HOH . J 4 HOH A 96 496 33 HOH HOH . J 4 HOH A 97 497 75 HOH HOH . J 4 HOH A 98 498 123 HOH HOH . J 4 HOH A 99 499 95 HOH HOH . J 4 HOH A 100 500 54 HOH HOH . J 4 HOH A 101 501 8 HOH HOH . J 4 HOH A 102 502 131 HOH HOH . J 4 HOH A 103 503 203 HOH HOH . J 4 HOH A 104 504 51 HOH HOH . J 4 HOH A 105 505 208 HOH HOH . J 4 HOH A 106 506 82 HOH HOH . J 4 HOH A 107 507 249 HOH HOH . J 4 HOH A 108 508 58 HOH HOH . J 4 HOH A 109 509 66 HOH HOH . J 4 HOH A 110 510 147 HOH HOH . J 4 HOH A 111 511 19 HOH HOH . J 4 HOH A 112 512 36 HOH HOH . J 4 HOH A 113 513 65 HOH HOH . J 4 HOH A 114 514 46 HOH HOH . J 4 HOH A 115 515 67 HOH HOH . J 4 HOH A 116 516 22 HOH HOH . J 4 HOH A 117 517 148 HOH HOH . J 4 HOH A 118 518 134 HOH HOH . J 4 HOH A 119 519 89 HOH HOH . J 4 HOH A 120 520 52 HOH HOH . J 4 HOH A 121 521 21 HOH HOH . J 4 HOH A 122 522 38 HOH HOH . J 4 HOH A 123 523 61 HOH HOH . J 4 HOH A 124 524 60 HOH HOH . J 4 HOH A 125 525 23 HOH HOH . J 4 HOH A 126 526 218 HOH HOH . J 4 HOH A 127 527 191 HOH HOH . J 4 HOH A 128 528 88 HOH HOH . J 4 HOH A 129 529 49 HOH HOH . J 4 HOH A 130 530 10 HOH HOH . J 4 HOH A 131 531 30 HOH HOH . J 4 HOH A 132 532 180 HOH HOH . J 4 HOH A 133 533 45 HOH HOH . J 4 HOH A 134 534 188 HOH HOH . J 4 HOH A 135 535 37 HOH HOH . J 4 HOH A 136 536 29 HOH HOH . J 4 HOH A 137 537 71 HOH HOH . J 4 HOH A 138 538 77 HOH HOH . J 4 HOH A 139 539 12 HOH HOH . J 4 HOH A 140 540 72 HOH HOH . J 4 HOH A 141 541 34 HOH HOH . J 4 HOH A 142 542 236 HOH HOH . J 4 HOH A 143 543 87 HOH HOH . J 4 HOH A 144 544 178 HOH HOH . J 4 HOH A 145 545 39 HOH HOH . J 4 HOH A 146 546 195 HOH HOH . J 4 HOH A 147 547 15 HOH HOH . J 4 HOH A 148 548 78 HOH HOH . J 4 HOH A 149 549 101 HOH HOH . J 4 HOH A 150 550 168 HOH HOH . J 4 HOH A 151 551 98 HOH HOH . J 4 HOH A 152 552 79 HOH HOH . J 4 HOH A 153 553 114 HOH HOH . J 4 HOH A 154 554 112 HOH HOH . J 4 HOH A 155 555 115 HOH HOH . J 4 HOH A 156 556 228 HOH HOH . J 4 HOH A 157 557 99 HOH HOH . J 4 HOH A 158 558 211 HOH HOH . J 4 HOH A 159 559 224 HOH HOH . J 4 HOH A 160 560 127 HOH HOH . J 4 HOH A 161 561 163 HOH HOH . J 4 HOH A 162 562 35 HOH HOH . J 4 HOH A 163 563 227 HOH HOH . J 4 HOH A 164 564 206 HOH HOH . J 4 HOH A 165 565 116 HOH HOH . J 4 HOH A 166 566 141 HOH HOH . J 4 HOH A 167 567 160 HOH HOH . J 4 HOH A 168 568 80 HOH HOH . J 4 HOH A 169 569 238 HOH HOH . J 4 HOH A 170 570 153 HOH HOH . J 4 HOH A 171 571 248 HOH HOH . J 4 HOH A 172 572 125 HOH HOH . J 4 HOH A 173 573 173 HOH HOH . J 4 HOH A 174 574 177 HOH HOH . J 4 HOH A 175 575 194 HOH HOH . J 4 HOH A 176 576 240 HOH HOH . J 4 HOH A 177 577 169 HOH HOH . J 4 HOH A 178 578 32 HOH HOH . J 4 HOH A 179 579 139 HOH HOH . J 4 HOH A 180 580 210 HOH HOH . J 4 HOH A 181 581 105 HOH HOH . J 4 HOH A 182 582 247 HOH HOH . J 4 HOH A 183 583 152 HOH HOH . J 4 HOH A 184 584 192 HOH HOH . J 4 HOH A 185 585 103 HOH HOH . J 4 HOH A 186 586 232 HOH HOH . J 4 HOH A 187 587 204 HOH HOH . J 4 HOH A 188 588 31 HOH HOH . J 4 HOH A 189 589 165 HOH HOH . J 4 HOH A 190 590 109 HOH HOH . J 4 HOH A 191 591 246 HOH HOH . J 4 HOH A 192 592 143 HOH HOH . J 4 HOH A 193 593 142 HOH HOH . J 4 HOH A 194 594 119 HOH HOH . J 4 HOH A 195 595 253 HOH HOH . J 4 HOH A 196 596 118 HOH HOH . J 4 HOH A 197 597 200 HOH HOH . J 4 HOH A 198 598 130 HOH HOH . J 4 HOH A 199 599 107 HOH HOH . J 4 HOH A 200 600 126 HOH HOH . J 4 HOH A 201 601 81 HOH HOH . J 4 HOH A 202 602 182 HOH HOH . J 4 HOH A 203 603 217 HOH HOH . J 4 HOH A 204 604 172 HOH HOH . J 4 HOH A 205 605 193 HOH HOH . J 4 HOH A 206 606 233 HOH HOH . J 4 HOH A 207 607 167 HOH HOH . J 4 HOH A 208 608 124 HOH HOH . J 4 HOH A 209 609 198 HOH HOH . J 4 HOH A 210 610 144 HOH HOH . J 4 HOH A 211 611 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 13.348 20.241 67.574 1 109.63 ? S DMS 303 A 1 HETATM 2 O O DMS . . . D 2 13.907 20.141 66.193 1 109.59 ? O DMS 303 A 1 HETATM 3 C C1 DMS . . . D 2 14.171 19.02 68.624 1 110.19 ? C1 DMS 303 A 1 HETATM 4 C C2 DMS . . . D 2 13.946 21.762 68.368 1 110.92 ? C2 DMS 303 A 1 HETATM 5 H H11 DMS . . . D 2 13.847 19.139 69.625 1 132.23 ? H11 DMS 303 A 1 HETATM 6 H H12 DMS . . . D 2 15.22 19.161 68.573 1 132.23 ? H12 DMS 303 A 1 HETATM 7 H H13 DMS . . . D 2 13.93 18.045 68.288 1 132.23 ? H13 DMS 303 A 1 HETATM 8 H H21 DMS . . . D 2 13.62 21.787 69.375 1 133.11 ? H21 DMS 303 A 1 HETATM 9 H H22 DMS . . . D 2 13.563 22.604 67.852 1 133.11 ? H22 DMS 303 A 1 HETATM 10 H H23 DMS . . . D 2 15.005 21.782 68.34 1 133.11 ? H23 DMS 303 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #