data_6B4U # _model_server_result.job_id mCy3X6TtA7tCEqLCkLwXgg _model_server_result.datetime_utc '2024-11-25 13:58:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6B4U # _exptl.entry_id 6B4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 548.671 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-(2-methylphenyl)-1-[2-(morpholin-4-yl)ethyl]-3-{3-[(naphthalen-1-yl)oxy]propyl}-1H-indole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B4U _cell.length_a 48.355 _cell.length_b 80.597 _cell.length_c 89.358 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H36 N2 O4' _chem_comp.formula_weight 548.671 _chem_comp.id CN7 _chem_comp.mon_nstd_flag . _chem_comp.name '7-(2-methylphenyl)-1-[2-(morpholin-4-yl)ethyl]-3-{3-[(naphthalen-1-yl)oxy]propyl}-1H-indole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O39 C28 CN7 sing 70 n n O39 C29 CN7 sing 71 n n C28 C26 CN7 sing 72 n n C4 C3 CN7 doub 73 n y C4 C13 CN7 sing 74 n y C3 C11 CN7 sing 75 n y C29 C27 CN7 sing 76 n n C26 N37 CN7 sing 77 n n C13 C20 CN7 doub 78 n y C11 C18 CN7 doub 79 n y C27 N37 CN7 sing 80 n n N37 C34 CN7 sing 81 n n C20 C18 CN7 sing 82 n y C20 C30 CN7 sing 83 n n C18 C19 CN7 sing 84 n n C34 C33 CN7 sing 85 n n C33 N36 CN7 sing 86 n n C19 C12 CN7 doub 87 n y C19 C22 CN7 sing 88 n y C12 C5 CN7 sing 89 n y N36 C22 CN7 sing 90 n y N36 C24 CN7 sing 91 n y C22 C17 CN7 doub 92 n y C5 C9 CN7 doub 93 n y C24 C25 CN7 sing 94 n n C24 C21 CN7 doub 95 n y C17 C9 CN7 sing 96 n y C17 C21 CN7 sing 97 n y O38 C25 CN7 doub 98 n n C25 O40 CN7 sing 99 n n C21 C31 CN7 sing 100 n n C6 C14 CN7 doub 101 n y C6 C10 CN7 sing 102 n y C14 C23 CN7 sing 103 n y C35 C32 CN7 sing 104 n n C35 O41 CN7 sing 105 n n C31 C32 CN7 sing 106 n n C10 C15 CN7 doub 107 n y C23 O41 CN7 sing 108 n n C23 C16 CN7 doub 109 n y C15 C16 CN7 sing 110 n y C15 C7 CN7 sing 111 n y C16 C8 CN7 sing 112 n y C7 C1 CN7 doub 113 n y C8 C2 CN7 doub 114 n y C1 C2 CN7 sing 115 n y C4 H1 CN7 sing 116 n n C5 H2 CN7 sing 117 n n C6 H3 CN7 sing 118 n n C7 H4 CN7 sing 119 n n C8 H5 CN7 sing 120 n n C10 H6 CN7 sing 121 n n C13 H7 CN7 sing 122 n n C26 H8 CN7 sing 123 n n C26 H9 CN7 sing 124 n n C28 H10 CN7 sing 125 n n C28 H11 CN7 sing 126 n n C1 H12 CN7 sing 127 n n C2 H13 CN7 sing 128 n n C3 H14 CN7 sing 129 n n C9 H15 CN7 sing 130 n n C11 H16 CN7 sing 131 n n C12 H17 CN7 sing 132 n n C14 H18 CN7 sing 133 n n C27 H19 CN7 sing 134 n n C27 H20 CN7 sing 135 n n C29 H21 CN7 sing 136 n n C29 H22 CN7 sing 137 n n C30 H23 CN7 sing 138 n n C30 H24 CN7 sing 139 n n C30 H25 CN7 sing 140 n n C31 H26 CN7 sing 141 n n C31 H27 CN7 sing 142 n n C32 H28 CN7 sing 143 n n C32 H29 CN7 sing 144 n n C33 H30 CN7 sing 145 n n C33 H31 CN7 sing 146 n n C34 H32 CN7 sing 147 n n C34 H33 CN7 sing 148 n n C35 H34 CN7 sing 149 n n C35 H35 CN7 sing 150 n n O40 H37 CN7 sing 151 n n # _atom_sites.entry_id 6B4U _atom_sites.fract_transf_matrix[1][1] 0.02068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CN7 A 1 401 1 CN7 LIG . C 3 HOH A 1 501 28 HOH HOH . C 3 HOH A 2 502 3 HOH HOH . C 3 HOH A 3 503 46 HOH HOH . C 3 HOH A 4 504 5 HOH HOH . C 3 HOH A 5 505 40 HOH HOH . C 3 HOH A 6 506 80 HOH HOH . C 3 HOH A 7 507 32 HOH HOH . C 3 HOH A 8 508 93 HOH HOH . C 3 HOH A 9 509 17 HOH HOH . C 3 HOH A 10 510 45 HOH HOH . C 3 HOH A 11 511 73 HOH HOH . C 3 HOH A 12 512 43 HOH HOH . C 3 HOH A 13 513 11 HOH HOH . C 3 HOH A 14 514 39 HOH HOH . C 3 HOH A 15 515 75 HOH HOH . C 3 HOH A 16 516 56 HOH HOH . C 3 HOH A 17 517 7 HOH HOH . C 3 HOH A 18 518 103 HOH HOH . C 3 HOH A 19 519 88 HOH HOH . C 3 HOH A 20 520 82 HOH HOH . C 3 HOH A 21 521 57 HOH HOH . C 3 HOH A 22 522 14 HOH HOH . C 3 HOH A 23 523 70 HOH HOH . C 3 HOH A 24 524 10 HOH HOH . C 3 HOH A 25 525 9 HOH HOH . C 3 HOH A 26 526 92 HOH HOH . C 3 HOH A 27 527 42 HOH HOH . C 3 HOH A 28 528 99 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 108 HOH HOH . C 3 HOH A 31 531 2 HOH HOH . C 3 HOH A 32 532 89 HOH HOH . C 3 HOH A 33 533 37 HOH HOH . C 3 HOH A 34 534 44 HOH HOH . C 3 HOH A 35 535 15 HOH HOH . C 3 HOH A 36 536 8 HOH HOH . C 3 HOH A 37 537 13 HOH HOH . C 3 HOH A 38 538 34 HOH HOH . C 3 HOH A 39 539 76 HOH HOH . C 3 HOH A 40 540 25 HOH HOH . C 3 HOH A 41 541 38 HOH HOH . C 3 HOH A 42 542 63 HOH HOH . C 3 HOH A 43 543 22 HOH HOH . C 3 HOH A 44 544 20 HOH HOH . C 3 HOH A 45 545 52 HOH HOH . C 3 HOH A 46 546 77 HOH HOH . C 3 HOH A 47 547 19 HOH HOH . C 3 HOH A 48 548 26 HOH HOH . C 3 HOH A 49 549 23 HOH HOH . C 3 HOH A 50 550 36 HOH HOH . C 3 HOH A 51 551 6 HOH HOH . C 3 HOH A 52 552 55 HOH HOH . C 3 HOH A 53 553 53 HOH HOH . C 3 HOH A 54 554 104 HOH HOH . C 3 HOH A 55 555 60 HOH HOH . C 3 HOH A 56 556 49 HOH HOH . C 3 HOH A 57 557 71 HOH HOH . C 3 HOH A 58 558 31 HOH HOH . C 3 HOH A 59 559 105 HOH HOH . C 3 HOH A 60 560 68 HOH HOH . C 3 HOH A 61 561 16 HOH HOH . C 3 HOH A 62 562 21 HOH HOH . C 3 HOH A 63 563 35 HOH HOH . C 3 HOH A 64 564 48 HOH HOH . C 3 HOH A 65 565 58 HOH HOH . C 3 HOH A 66 566 78 HOH HOH . C 3 HOH A 67 567 33 HOH HOH . C 3 HOH A 68 568 69 HOH HOH . C 3 HOH A 69 569 66 HOH HOH . C 3 HOH A 70 570 18 HOH HOH . C 3 HOH A 71 571 72 HOH HOH . C 3 HOH A 72 572 67 HOH HOH . C 3 HOH A 73 573 94 HOH HOH . C 3 HOH A 74 574 74 HOH HOH . C 3 HOH A 75 575 50 HOH HOH . C 3 HOH A 76 576 96 HOH HOH . C 3 HOH A 77 577 30 HOH HOH . C 3 HOH A 78 578 81 HOH HOH . C 3 HOH A 79 579 65 HOH HOH . C 3 HOH A 80 580 51 HOH HOH . C 3 HOH A 81 581 83 HOH HOH . C 3 HOH A 82 582 12 HOH HOH . C 3 HOH A 83 583 101 HOH HOH . C 3 HOH A 84 584 86 HOH HOH . C 3 HOH A 85 585 54 HOH HOH . C 3 HOH A 86 586 91 HOH HOH . C 3 HOH A 87 587 97 HOH HOH . C 3 HOH A 88 588 87 HOH HOH . C 3 HOH A 89 589 59 HOH HOH . C 3 HOH A 90 590 79 HOH HOH . C 3 HOH A 91 591 41 HOH HOH . C 3 HOH A 92 592 1 HOH HOH . C 3 HOH A 93 593 107 HOH HOH . C 3 HOH A 94 594 100 HOH HOH . C 3 HOH A 95 595 24 HOH HOH . C 3 HOH A 96 596 98 HOH HOH . C 3 HOH A 97 597 62 HOH HOH . C 3 HOH A 98 598 85 HOH HOH . C 3 HOH A 99 599 27 HOH HOH . C 3 HOH A 100 600 90 HOH HOH . C 3 HOH A 101 601 61 HOH HOH . C 3 HOH A 102 602 84 HOH HOH . C 3 HOH A 103 603 106 HOH HOH . C 3 HOH A 104 604 47 HOH HOH . C 3 HOH A 105 605 95 HOH HOH . C 3 HOH A 106 606 64 HOH HOH . C 3 HOH A 107 607 102 HOH HOH . C 3 HOH A 108 608 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 CN7 . . . B 2 -10.225 17.097 -6.458 1 37.35 ? C4 CN7 401 A 1 HETATM 2 C C5 CN7 . . . B 2 -7.278 15.341 -1.105 1 29.25 ? C5 CN7 401 A 1 HETATM 3 C C6 CN7 . . . B 2 -1.716 15.899 0.819 1 31.51 ? C6 CN7 401 A 1 HETATM 4 C C7 CN7 . . . B 2 -2.229 13.925 3.835 1 28.37 ? C7 CN7 401 A 1 HETATM 5 C C8 CN7 . . . B 2 -4.33 15.672 4.039 1 28.43 ? C8 CN7 401 A 1 HETATM 6 C C10 CN7 . . . B 2 -1.53 14.958 1.807 1 29.81 ? C10 CN7 401 A 1 HETATM 7 C C13 CN7 . . . B 2 -11.007 17.096 -5.325 1 37.29 ? C13 CN7 401 A 1 HETATM 8 C C15 CN7 . . . B 2 -2.405 14.895 2.87 1 29.27 ? C15 CN7 401 A 1 HETATM 9 C C17 CN7 . . . B 2 -7.66 17.609 -0.506 1 31.67 ? C17 CN7 401 A 1 HETATM 10 C C20 CN7 . . . B 2 -10.426 16.994 -4.078 1 36.32 ? C20 CN7 401 A 1 HETATM 11 C C21 CN7 . . . B 2 -7.694 18.833 0.223 1 31.16 ? C21 CN7 401 A 1 HETATM 12 C C22 CN7 . . . B 2 -8.245 17.817 -1.752 1 33.17 ? C22 CN7 401 A 1 HETATM 13 C C24 CN7 . . . B 2 -8.268 19.782 -0.593 1 34.59 ? C24 CN7 401 A 1 HETATM 14 C C26 CN7 . . . B 2 -8.198 20.475 -6.092 1 51.11 ? C26 CN7 401 A 1 HETATM 15 C C28 CN7 . . . B 2 -8.126 21.459 -7.25 1 52.44 ? C28 CN7 401 A 1 HETATM 16 C C1 CN7 . . . B 2 -3.085 13.832 4.909 1 28.96 ? C1 CN7 401 A 1 HETATM 17 C C2 CN7 . . . B 2 -4.139 14.715 5.009 1 28.1 ? C2 CN7 401 A 1 HETATM 18 C C3 CN7 . . . B 2 -8.86 16.984 -6.344 1 36.73 ? C3 CN7 401 A 1 HETATM 19 C C9 CN7 . . . B 2 -7.189 16.346 -0.169 1 30.13 ? C9 CN7 401 A 1 HETATM 20 C C11 CN7 . . . B 2 -8.276 16.879 -5.101 1 36.27 ? C11 CN7 401 A 1 HETATM 21 C C12 CN7 . . . B 2 -7.869 15.559 -2.327 1 31.51 ? C12 CN7 401 A 1 HETATM 22 C C14 CN7 . . . B 2 -2.772 16.784 0.888 1 33.33 ? C14 CN7 401 A 1 HETATM 23 C C16 CN7 . . . B 2 -3.461 15.784 2.962 1 29.54 ? C16 CN7 401 A 1 HETATM 24 C C18 CN7 . . . B 2 -9.046 16.897 -3.959 1 34.33 ? C18 CN7 401 A 1 HETATM 25 C C19 CN7 . . . B 2 -8.382 16.791 -2.683 1 32 ? C19 CN7 401 A 1 HETATM 26 C C23 CN7 . . . B 2 -3.639 16.735 1.973 1 30.74 ? C23 CN7 401 A 1 HETATM 27 C C25 CN7 . . . B 2 -8.605 21.148 -0.295 1 34.82 ? C25 CN7 401 A 1 HETATM 28 C C27 CN7 . . . B 2 -6.645 21.982 -4.877 1 51.68 ? C27 CN7 401 A 1 HETATM 29 C C29 CN7 . . . B 2 -6.652 22.874 -6.108 1 53.04 ? C29 CN7 401 A 1 HETATM 30 C C30 CN7 . . . B 2 -11.352 16.997 -2.901 1 35.84 ? C30 CN7 401 A 1 HETATM 31 C C31 CN7 . . . B 2 -7.24 19.032 1.618 1 28.43 ? C31 CN7 401 A 1 HETATM 32 C C32 CN7 . . . B 2 -5.86 19.642 1.773 1 29.28 ? C32 CN7 401 A 1 HETATM 33 C C33 CN7 . . . B 2 -9.043 19.91 -2.933 1 39.83 ? C33 CN7 401 A 1 HETATM 34 C C34 CN7 . . . B 2 -7.769 20.243 -3.701 1 44.52 ? C34 CN7 401 A 1 HETATM 35 C C35 CN7 . . . B 2 -4.743 18.731 1.304 1 30.26 ? C35 CN7 401 A 1 HETATM 36 N N36 CN7 . . . B 2 -8.6 19.151 -1.768 1 35.58 ? N36 CN7 401 A 1 HETATM 37 N N37 CN7 . . . B 2 -7.925 21.213 -4.819 1 48.41 ? N37 CN7 401 A 1 HETATM 38 O O38 CN7 . . . B 2 -9.727 21.604 -0.438 1 35.73 ? O38 CN7 401 A 1 HETATM 39 O O39 CN7 . . . B 2 -6.824 22.047 -7.259 1 53.02 ? O39 CN7 401 A 1 HETATM 40 O O40 CN7 . . . B 2 -7.582 21.861 0.221 1 36.33 ? O40 CN7 401 A 1 HETATM 41 O O41 CN7 . . . B 2 -4.735 17.576 2.141 1 32.46 ? O41 CN7 401 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #