data_6B5Y # _model_server_result.job_id StjlgQg9qVPG5KE6VoWXfg _model_server_result.datetime_utc '2024-11-05 14:41:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6B5Y # _exptl.entry_id 6B5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 554.58 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ceftriaxone _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.68 _cell.angle_gamma 90 _cell.entry_id 6B5Y _cell.length_a 78.53 _cell.length_b 96.03 _cell.length_c 112.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,K 1 1 B,G,L 2 1 C,H,I,M 3 1 D,J,N 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N # _chem_comp.formula 'C18 H18 N8 O7 S3' _chem_comp.formula_weight 554.58 _chem_comp.id 9F2 _chem_comp.mon_nstd_flag . _chem_comp.name Ceftriaxone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C17 9F2 sing 1 n n C17 N8 9F2 doub 2 n y C17 S3 9F2 sing 3 n y N8 C15 9F2 sing 4 n y S3 C16 9F2 sing 5 n y C15 C16 9F2 doub 6 n y C15 C13 9F2 sing 7 n n N5 C11 9F2 sing 8 n n N5 C12 9F2 sing 9 n n O3 C10 9F2 doub 10 n n C14 O5 9F2 sing 11 n n C13 N6 9F2 doub 12 e n C13 C12 9F2 sing 13 n n C11 C10 9F2 sing 14 n n C11 C1 9F2 sing 15 n n N6 O5 9F2 sing 16 n n C12 O4 9F2 doub 17 n n C10 N4 9F2 sing 18 n n O6 C18 9F2 doub 19 n n C1 N4 9F2 sing 20 n n C1 S1 9F2 sing 21 n n N4 C9 9F2 sing 22 n n C18 C9 9F2 sing 23 n n C18 O7 9F2 sing 24 n n C9 C3 9F2 doub 25 n n S1 C2 9F2 sing 26 n n C3 C2 9F2 sing 27 n n C3 C4 9F2 sing 28 n n C4 S2 9F2 sing 29 n n S2 C5 9F2 sing 30 n n C5 N1 9F2 doub 31 n n C5 N3 9F2 sing 32 n n N1 C6 9F2 sing 33 n n C8 N3 9F2 sing 34 n n N3 N2 9F2 sing 35 n n C6 O1 9F2 doub 36 n n C6 C7 9F2 sing 37 n n N2 C7 9F2 sing 38 n n C7 O2 9F2 doub 39 n n C1 H1 9F2 sing 40 n n C2 H2 9F2 sing 41 n n C2 H3 9F2 sing 42 n n C4 H5 9F2 sing 43 n n C4 H6 9F2 sing 44 n n N2 H7 9F2 sing 45 n n C8 H8 9F2 sing 46 n n C8 H9 9F2 sing 47 n n C8 H10 9F2 sing 48 n n C11 H12 9F2 sing 49 n n N5 H13 9F2 sing 50 n n C14 H14 9F2 sing 51 n n C14 H15 9F2 sing 52 n n C14 H16 9F2 sing 53 n n C16 H18 9F2 sing 54 n n N7 H21 9F2 sing 55 n n N7 H22 9F2 sing 56 n n O7 H26 9F2 sing 57 n n # _atom_sites.entry_id 6B5Y _atom_sites.fract_transf_matrix[1][1] 0.012734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004554 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 301 6 PO4 PO4 . F 3 9F2 A 1 302 1 9F2 CEF . G 3 9F2 B 1 400 400 9F2 CEF . H 2 PO4 C 1 301 5 PO4 PO4 . I 3 9F2 C 1 302 3 9F2 CEF . J 3 9F2 D 1 400 400 9F2 CEF . K 4 HOH A 1 401 112 HOH HOH . K 4 HOH A 2 402 76 HOH HOH . K 4 HOH A 3 403 128 HOH HOH . K 4 HOH A 4 404 85 HOH HOH . K 4 HOH A 5 405 91 HOH HOH . K 4 HOH A 6 406 101 HOH HOH . K 4 HOH A 7 407 140 HOH HOH . K 4 HOH A 8 408 4 HOH HOH . K 4 HOH A 9 409 5 HOH HOH . K 4 HOH A 10 410 38 HOH HOH . K 4 HOH A 11 411 15 HOH HOH . K 4 HOH A 12 412 8 HOH HOH . K 4 HOH A 13 413 117 HOH HOH . K 4 HOH A 14 414 71 HOH HOH . K 4 HOH A 15 415 48 HOH HOH . K 4 HOH A 16 416 6 HOH HOH . K 4 HOH A 17 417 115 HOH HOH . K 4 HOH A 18 418 51 HOH HOH . K 4 HOH A 19 419 135 HOH HOH . K 4 HOH A 20 420 19 HOH HOH . K 4 HOH A 21 421 28 HOH HOH . K 4 HOH A 22 422 21 HOH HOH . K 4 HOH A 23 423 52 HOH HOH . K 4 HOH A 24 424 30 HOH HOH . K 4 HOH A 25 425 110 HOH HOH . K 4 HOH A 26 426 27 HOH HOH . K 4 HOH A 27 427 42 HOH HOH . K 4 HOH A 28 428 119 HOH HOH . K 4 HOH A 29 429 127 HOH HOH . K 4 HOH A 30 430 64 HOH HOH . K 4 HOH A 31 431 12 HOH HOH . K 4 HOH A 32 432 22 HOH HOH . L 4 HOH B 1 501 53 HOH HOH . L 4 HOH B 2 502 33 HOH HOH . L 4 HOH B 3 503 17 HOH HOH . L 4 HOH B 4 504 25 HOH HOH . L 4 HOH B 5 505 118 HOH HOH . L 4 HOH B 6 506 142 HOH HOH . L 4 HOH B 7 507 10 HOH HOH . L 4 HOH B 8 508 37 HOH HOH . L 4 HOH B 9 509 35 HOH HOH . L 4 HOH B 10 510 40 HOH HOH . L 4 HOH B 11 511 116 HOH HOH . L 4 HOH B 12 512 7 HOH HOH . L 4 HOH B 13 513 41 HOH HOH . L 4 HOH B 14 514 32 HOH HOH . L 4 HOH B 15 515 133 HOH HOH . L 4 HOH B 16 516 86 HOH HOH . L 4 HOH B 17 517 73 HOH HOH . L 4 HOH B 18 518 55 HOH HOH . L 4 HOH B 19 519 95 HOH HOH . L 4 HOH B 20 520 34 HOH HOH . L 4 HOH B 21 521 98 HOH HOH . L 4 HOH B 22 522 26 HOH HOH . L 4 HOH B 23 523 134 HOH HOH . L 4 HOH B 24 524 59 HOH HOH . L 4 HOH B 25 525 43 HOH HOH . L 4 HOH B 26 526 141 HOH HOH . L 4 HOH B 27 527 54 HOH HOH . L 4 HOH B 28 528 20 HOH HOH . L 4 HOH B 29 529 24 HOH HOH . L 4 HOH B 30 530 114 HOH HOH . L 4 HOH B 31 531 102 HOH HOH . M 4 HOH C 1 401 88 HOH HOH . M 4 HOH C 2 402 50 HOH HOH . M 4 HOH C 3 403 56 HOH HOH . M 4 HOH C 4 404 74 HOH HOH . M 4 HOH C 5 405 66 HOH HOH . M 4 HOH C 6 406 136 HOH HOH . M 4 HOH C 7 407 11 HOH HOH . M 4 HOH C 8 408 45 HOH HOH . M 4 HOH C 9 409 14 HOH HOH . M 4 HOH C 10 410 82 HOH HOH . M 4 HOH C 11 411 68 HOH HOH . M 4 HOH C 12 412 124 HOH HOH . M 4 HOH C 13 413 31 HOH HOH . M 4 HOH C 14 414 49 HOH HOH . M 4 HOH C 15 415 65 HOH HOH . M 4 HOH C 16 416 78 HOH HOH . M 4 HOH C 17 417 29 HOH HOH . M 4 HOH C 18 418 138 HOH HOH . M 4 HOH C 19 419 23 HOH HOH . M 4 HOH C 20 420 47 HOH HOH . M 4 HOH C 21 421 57 HOH HOH . M 4 HOH C 22 422 61 HOH HOH . M 4 HOH C 23 423 67 HOH HOH . M 4 HOH C 24 424 84 HOH HOH . M 4 HOH C 25 425 97 HOH HOH . M 4 HOH C 26 426 107 HOH HOH . M 4 HOH C 27 427 58 HOH HOH . M 4 HOH C 28 428 46 HOH HOH . M 4 HOH C 29 429 81 HOH HOH . M 4 HOH C 30 430 106 HOH HOH . M 4 HOH C 31 431 100 HOH HOH . M 4 HOH C 32 432 104 HOH HOH . M 4 HOH C 33 433 123 HOH HOH . M 4 HOH C 34 434 92 HOH HOH . M 4 HOH C 35 435 111 HOH HOH . M 4 HOH C 36 436 60 HOH HOH . M 4 HOH C 37 437 39 HOH HOH . M 4 HOH C 38 438 63 HOH HOH . M 4 HOH C 39 439 105 HOH HOH . M 4 HOH C 40 440 62 HOH HOH . M 4 HOH C 41 441 122 HOH HOH . M 4 HOH C 42 442 108 HOH HOH . M 4 HOH C 43 443 109 HOH HOH . M 4 HOH C 44 444 99 HOH HOH . M 4 HOH C 45 445 143 HOH HOH . M 4 HOH C 46 446 139 HOH HOH . M 4 HOH C 47 447 132 HOH HOH . M 4 HOH C 48 448 130 HOH HOH . M 4 HOH C 49 449 113 HOH HOH . N 4 HOH D 1 501 80 HOH HOH . N 4 HOH D 2 502 93 HOH HOH . N 4 HOH D 3 503 36 HOH HOH . N 4 HOH D 4 504 126 HOH HOH . N 4 HOH D 5 505 1 HOH HOH . N 4 HOH D 6 506 129 HOH HOH . N 4 HOH D 7 507 72 HOH HOH . N 4 HOH D 8 508 3 HOH HOH . N 4 HOH D 9 509 13 HOH HOH . N 4 HOH D 10 510 121 HOH HOH . N 4 HOH D 11 511 69 HOH HOH . N 4 HOH D 12 512 83 HOH HOH . N 4 HOH D 13 513 2 HOH HOH . N 4 HOH D 14 514 44 HOH HOH . N 4 HOH D 15 515 9 HOH HOH . N 4 HOH D 16 516 90 HOH HOH . N 4 HOH D 17 517 137 HOH HOH . N 4 HOH D 18 518 125 HOH HOH . N 4 HOH D 19 519 77 HOH HOH . N 4 HOH D 20 520 16 HOH HOH . N 4 HOH D 21 521 18 HOH HOH . N 4 HOH D 22 522 103 HOH HOH . N 4 HOH D 23 523 131 HOH HOH . N 4 HOH D 24 524 87 HOH HOH . N 4 HOH D 25 525 96 HOH HOH . N 4 HOH D 26 526 89 HOH HOH . N 4 HOH D 27 527 94 HOH HOH . N 4 HOH D 28 528 120 HOH HOH . N 4 HOH D 29 529 75 HOH HOH . N 4 HOH D 30 530 70 HOH HOH . N 4 HOH D 31 531 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9F2 . . . F 3 20.018 3.196 23.956 1 95.9 ? C1 9F2 302 A 1 HETATM 2 S S1 9F2 . . . F 3 18.975 2.293 25.032 1 107.91 ? S1 9F2 302 A 1 HETATM 3 C C2 9F2 . . . F 3 19.5 2.788 26.65 1 97.19 ? C2 9F2 302 A 1 HETATM 4 C C3 9F2 . . . F 3 20.867 3.46 26.649 1 95.05 ? C3 9F2 302 A 1 HETATM 5 C C4 9F2 . . . F 3 21.183 4.428 27.766 1 91.76 ? C4 9F2 302 A 1 HETATM 6 S S2 9F2 . . . F 3 21.06 6.094 27.183 1 99.86 ? S2 9F2 302 A 1 HETATM 7 C C5 9F2 . . . F 3 21.272 7.12 28.516 1 92.71 ? C5 9F2 302 A 1 HETATM 8 N N1 9F2 . . . F 3 22.148 6.745 29.477 1 94.46 ? N1 9F2 302 A 1 HETATM 9 C C6 9F2 . . . F 3 22.357 7.522 30.566 1 98 ? C6 9F2 302 A 1 HETATM 10 O O1 9F2 . . . F 3 23.177 7.124 31.427 1 102.31 ? O1 9F2 302 A 1 HETATM 11 C C7 9F2 . . . F 3 21.671 8.731 30.714 1 93.12 ? C7 9F2 302 A 1 HETATM 12 O O2 9F2 . . . F 3 21.861 9.453 31.716 1 95.95 ? O2 9F2 302 A 1 HETATM 13 N N2 9F2 . . . F 3 20.794 9.14 29.782 1 91.16 ? N2 9F2 302 A 1 HETATM 14 N N3 9F2 . . . F 3 20.564 8.346 28.642 1 94.99 ? N3 9F2 302 A 1 HETATM 15 C C8 9F2 . . . F 3 19.603 8.778 27.613 1 78.32 ? C8 9F2 302 A 1 HETATM 16 C C9 9F2 . . . F 3 21.79 3.248 25.692 1 92.37 ? C9 9F2 302 A 1 HETATM 17 N N4 9F2 . . . F 3 21.345 2.865 24.494 1 98.22 ? N4 9F2 302 A 1 HETATM 18 C C10 9F2 . . . F 3 21.846 2.119 23.497 1 93.75 ? C10 9F2 302 A 1 HETATM 19 O O3 9F2 . . . F 3 22.846 1.456 23.213 1 79.72 ? O3 9F2 302 A 1 HETATM 20 C C11 9F2 . . . F 3 20.561 2.376 22.806 1 90.29 ? C11 9F2 302 A 1 HETATM 21 N N5 9F2 . . . F 3 19.741 1.297 22.355 1 95.75 ? N5 9F2 302 A 1 HETATM 22 C C12 9F2 . . . F 3 19.54 1.006 21.081 1 98.32 ? C12 9F2 302 A 1 HETATM 23 O O4 9F2 . . . F 3 19.227 1.85 20.243 1 90.72 ? O4 9F2 302 A 1 HETATM 24 C C13 9F2 . . . F 3 19.597 -0.434 20.815 1 100.16 ? C13 9F2 302 A 1 HETATM 25 N N6 9F2 . . . F 3 20.645 -1.134 20.495 1 103.23 ? N6 9F2 302 A 1 HETATM 26 O O5 9F2 . . . F 3 21.848 -0.753 20.255 1 91.16 ? O5 9F2 302 A 1 HETATM 27 C C14 9F2 . . . F 3 22.948 -1.69 20.314 1 58.05 ? C14 9F2 302 A 1 HETATM 28 C C15 9F2 . . . F 3 18.263 -1.014 21.126 1 94.73 ? C15 9F2 302 A 1 HETATM 29 C C16 9F2 . . . F 3 17.22 -0.138 21.515 1 90.76 ? C16 9F2 302 A 1 HETATM 30 S S3 9F2 . . . F 3 15.818 -1.082 21.871 1 96.94 ? S3 9F2 302 A 1 HETATM 31 C C17 9F2 . . . F 3 16.666 -2.548 21.507 1 91.81 ? C17 9F2 302 A 1 HETATM 32 N N7 9F2 . . . F 3 16.112 -3.783 21.578 1 80.9 ? N7 9F2 302 A 1 HETATM 33 N N8 9F2 . . . F 3 17.953 -2.355 21.141 1 94.58 ? N8 9F2 302 A 1 HETATM 34 C C18 9F2 . . . F 3 23.22 3.489 25.903 1 90.5 ? C18 9F2 302 A 1 HETATM 35 O O6 9F2 . . . F 3 23.874 2.654 26.569 1 93.33 ? O6 9F2 302 A 1 HETATM 36 O O7 9F2 . . . F 3 23.749 4.529 25.418 1 82.61 ? O7 9F2 302 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 36 #