data_6B61 # _model_server_result.job_id K0BIcTKrAW7YAyB8aIIF5A _model_server_result.datetime_utc '2024-11-15 22:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":304}' # _entry.id 6B61 # _exptl.entry_id 6B61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6B61 _cell.length_a 89.619 _cell.length_b 89.619 _cell.length_c 102.375 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 38 A ASP 38 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc2 A O THR 40 A THR 40 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc3 A OG1 THR 40 A THR 40 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc4 A O PRO 41 A PRO 41 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc5 A OE1 GLU 68 A GLU 68 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc6 B OD1 ASP 38 B ASP 38 1_555 K MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc7 B OG1 THR 40 B THR 40 1_555 K MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc8 B O PRO 41 B PRO 41 1_555 K MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc9 B OE2 GLU 68 B GLU 68 1_555 K MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 6B61 _atom_sites.fract_transf_matrix[1][1] 0.011158 _atom_sites.fract_transf_matrix[1][2] 0.006442 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 2 PO4 PO4 . D 3 MG A 1 302 4 MG MG . E 4 ASP A 1 303 1 ASP ASP . F 4 ASP A 1 304 3 ASP ASP . G 4 ASP A 1 305 4 ASP ASP . H 4 ASP A 1 306 2 ASP ASP . I 4 ASP A 1 307 5 ASP ASP . J 2 PO4 B 1 301 1 PO4 PO4 . K 3 MG B 1 302 3 MG MG . L 4 ASP B 1 303 2 ASP ASP . M 4 ASP B 1 304 5 ASP ASP . N 4 ASP B 1 305 1 ASP ASP . O 4 ASP B 1 306 3 ASP ASP . P 4 ASP B 1 307 4 ASP ASP . Q 5 HOH A 1 401 59 HOH HOH . Q 5 HOH A 2 402 35 HOH HOH . Q 5 HOH A 3 403 137 HOH HOH . Q 5 HOH A 4 404 12 HOH HOH . Q 5 HOH A 5 405 158 HOH HOH . Q 5 HOH A 6 406 30 HOH HOH . Q 5 HOH A 7 407 37 HOH HOH . Q 5 HOH A 8 408 3 HOH HOH . Q 5 HOH A 9 409 16 HOH HOH . Q 5 HOH A 10 410 89 HOH HOH . Q 5 HOH A 11 411 29 HOH HOH . Q 5 HOH A 12 412 22 HOH HOH . Q 5 HOH A 13 413 10 HOH HOH . Q 5 HOH A 14 414 154 HOH HOH . Q 5 HOH A 15 415 81 HOH HOH . Q 5 HOH A 16 416 91 HOH HOH . Q 5 HOH A 17 417 24 HOH HOH . Q 5 HOH A 18 418 110 HOH HOH . Q 5 HOH A 19 419 75 HOH HOH . Q 5 HOH A 20 420 21 HOH HOH . Q 5 HOH A 21 421 143 HOH HOH . Q 5 HOH A 22 422 57 HOH HOH . Q 5 HOH A 23 423 34 HOH HOH . Q 5 HOH A 24 424 120 HOH HOH . Q 5 HOH A 25 425 73 HOH HOH . Q 5 HOH A 26 426 150 HOH HOH . Q 5 HOH A 27 427 114 HOH HOH . Q 5 HOH A 28 428 72 HOH HOH . Q 5 HOH A 29 429 112 HOH HOH . Q 5 HOH A 30 430 107 HOH HOH . Q 5 HOH A 31 431 98 HOH HOH . Q 5 HOH A 32 432 45 HOH HOH . Q 5 HOH A 33 433 74 HOH HOH . Q 5 HOH A 34 434 7 HOH HOH . Q 5 HOH A 35 435 109 HOH HOH . Q 5 HOH A 36 436 53 HOH HOH . Q 5 HOH A 37 437 5 HOH HOH . Q 5 HOH A 38 438 19 HOH HOH . Q 5 HOH A 39 439 62 HOH HOH . Q 5 HOH A 40 440 44 HOH HOH . Q 5 HOH A 41 441 36 HOH HOH . Q 5 HOH A 42 442 77 HOH HOH . Q 5 HOH A 43 443 126 HOH HOH . Q 5 HOH A 44 444 20 HOH HOH . Q 5 HOH A 45 445 111 HOH HOH . Q 5 HOH A 46 446 13 HOH HOH . Q 5 HOH A 47 447 127 HOH HOH . Q 5 HOH A 48 448 61 HOH HOH . Q 5 HOH A 49 449 124 HOH HOH . Q 5 HOH A 50 450 80 HOH HOH . Q 5 HOH A 51 451 27 HOH HOH . Q 5 HOH A 52 452 8 HOH HOH . Q 5 HOH A 53 453 82 HOH HOH . Q 5 HOH A 54 454 76 HOH HOH . Q 5 HOH A 55 455 90 HOH HOH . Q 5 HOH A 56 456 125 HOH HOH . Q 5 HOH A 57 457 25 HOH HOH . Q 5 HOH A 58 458 159 HOH HOH . Q 5 HOH A 59 459 121 HOH HOH . Q 5 HOH A 60 460 95 HOH HOH . Q 5 HOH A 61 461 86 HOH HOH . Q 5 HOH A 62 462 79 HOH HOH . Q 5 HOH A 63 463 123 HOH HOH . Q 5 HOH A 64 464 113 HOH HOH . Q 5 HOH A 65 465 119 HOH HOH . Q 5 HOH A 66 466 18 HOH HOH . Q 5 HOH A 67 467 88 HOH HOH . Q 5 HOH A 68 468 122 HOH HOH . Q 5 HOH A 69 469 128 HOH HOH . Q 5 HOH A 70 470 106 HOH HOH . Q 5 HOH A 71 471 93 HOH HOH . Q 5 HOH A 72 472 105 HOH HOH . Q 5 HOH A 73 473 42 HOH HOH . Q 5 HOH A 74 474 83 HOH HOH . Q 5 HOH A 75 475 55 HOH HOH . Q 5 HOH A 76 476 54 HOH HOH . Q 5 HOH A 77 477 146 HOH HOH . Q 5 HOH A 78 478 102 HOH HOH . Q 5 HOH A 79 479 115 HOH HOH . Q 5 HOH A 80 480 142 HOH HOH . R 5 HOH B 1 401 58 HOH HOH . R 5 HOH B 2 402 32 HOH HOH . R 5 HOH B 3 403 85 HOH HOH . R 5 HOH B 4 404 141 HOH HOH . R 5 HOH B 5 405 153 HOH HOH . R 5 HOH B 6 406 78 HOH HOH . R 5 HOH B 7 407 31 HOH HOH . R 5 HOH B 8 408 157 HOH HOH . R 5 HOH B 9 409 155 HOH HOH . R 5 HOH B 10 410 6 HOH HOH . R 5 HOH B 11 411 68 HOH HOH . R 5 HOH B 12 412 23 HOH HOH . R 5 HOH B 13 413 1 HOH HOH . R 5 HOH B 14 414 49 HOH HOH . R 5 HOH B 15 415 47 HOH HOH . R 5 HOH B 16 416 103 HOH HOH . R 5 HOH B 17 417 147 HOH HOH . R 5 HOH B 18 418 116 HOH HOH . R 5 HOH B 19 419 134 HOH HOH . R 5 HOH B 20 420 17 HOH HOH . R 5 HOH B 21 421 9 HOH HOH . R 5 HOH B 22 422 26 HOH HOH . R 5 HOH B 23 423 135 HOH HOH . R 5 HOH B 24 424 117 HOH HOH . R 5 HOH B 25 425 156 HOH HOH . R 5 HOH B 26 426 99 HOH HOH . R 5 HOH B 27 427 41 HOH HOH . R 5 HOH B 28 428 2 HOH HOH . R 5 HOH B 29 429 38 HOH HOH . R 5 HOH B 30 430 132 HOH HOH . R 5 HOH B 31 431 94 HOH HOH . R 5 HOH B 32 432 66 HOH HOH . R 5 HOH B 33 433 11 HOH HOH . R 5 HOH B 34 434 108 HOH HOH . R 5 HOH B 35 435 50 HOH HOH . R 5 HOH B 36 436 138 HOH HOH . R 5 HOH B 37 437 43 HOH HOH . R 5 HOH B 38 438 40 HOH HOH . R 5 HOH B 39 439 14 HOH HOH . R 5 HOH B 40 440 131 HOH HOH . R 5 HOH B 41 441 104 HOH HOH . R 5 HOH B 42 442 87 HOH HOH . R 5 HOH B 43 443 46 HOH HOH . R 5 HOH B 44 444 96 HOH HOH . R 5 HOH B 45 445 4 HOH HOH . R 5 HOH B 46 446 84 HOH HOH . R 5 HOH B 47 447 56 HOH HOH . R 5 HOH B 48 448 28 HOH HOH . R 5 HOH B 49 449 69 HOH HOH . R 5 HOH B 50 450 52 HOH HOH . R 5 HOH B 51 451 63 HOH HOH . R 5 HOH B 52 452 92 HOH HOH . R 5 HOH B 53 453 136 HOH HOH . R 5 HOH B 54 454 67 HOH HOH . R 5 HOH B 55 455 139 HOH HOH . R 5 HOH B 56 456 129 HOH HOH . R 5 HOH B 57 457 145 HOH HOH . R 5 HOH B 58 458 151 HOH HOH . R 5 HOH B 59 459 130 HOH HOH . R 5 HOH B 60 460 100 HOH HOH . R 5 HOH B 61 461 133 HOH HOH . R 5 HOH B 62 462 15 HOH HOH . R 5 HOH B 63 463 140 HOH HOH . R 5 HOH B 64 464 51 HOH HOH . R 5 HOH B 65 465 65 HOH HOH . R 5 HOH B 66 466 144 HOH HOH . R 5 HOH B 67 467 118 HOH HOH . R 5 HOH B 68 468 60 HOH HOH . R 5 HOH B 69 469 48 HOH HOH . R 5 HOH B 70 470 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . M 4 34.54 -35.025 -0.917 1 53.92 ? N ASP 304 B 1 HETATM 2 C CA ASP . . . M 4 33.26 -35.711 -1.056 1 38.85 ? CA ASP 304 B 1 HETATM 3 C C ASP . . . M 4 33.47 -37.204 -1.254 1 61.18 ? C ASP 304 B 1 HETATM 4 O O ASP . . . M 4 34.438 -37.625 -1.902 1 69.06 ? O ASP 304 B 1 HETATM 5 C CB ASP . . . M 4 32.487 -35.154 -2.231 1 33.18 ? CB ASP 304 B 1 HETATM 6 C CG ASP . . . M 4 32.645 -33.646 -2.372 1 55.9 ? CG ASP 304 B 1 HETATM 7 O OD1 ASP . . . M 4 33.331 -33.214 -3.337 1 56.34 ? OD1 ASP 304 B 1 HETATM 8 O OD2 ASP . . . M 4 32.08 -32.896 -1.527 1 40.88 ? OD2 ASP 304 B 1 HETATM 9 O OXT ASP . . . M 4 32.693 -38.022 -0.741 1 66.59 ? OXT ASP 304 B 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #