data_6B64 # _model_server_result.job_id 7xXcK9F12N0IBwkkCdNFkQ _model_server_result.datetime_utc '2025-09-14 16:26:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6B64 # _exptl.entry_id 6B64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6B64 _cell.length_a 89.53 _cell.length_b 89.53 _cell.length_c 102.136 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 38 A ASP 38 1_555 I MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc2 A O THR 40 A THR 40 1_555 I MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc3 A OG1 THR 40 A THR 40 1_555 I MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 A O PRO 41 A PRO 41 1_555 I MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc5 A OE1 GLU 67 A GLU 67 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc6 A OE2 GLU 67 A GLU 67 1_555 I MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc7 A OE2 GLU 68 A GLU 68 1_555 I MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc8 A OD1 ASP 82 A ASP 82 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc9 A OD2 ASP 82 A ASP 82 1_555 H MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc10 A O LEU 84 A LEU 84 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc11 A OD1 ASP 85 A ASP 85 1_555 H MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc12 A OD1 ASP 200 A ASP 200 1_555 H MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc13 E O2 SO4 . A SO4 503 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc14 E O1 SO4 . A SO4 503 1_555 H MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc15 F O3 SO4 . A SO4 504 1_555 I MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc16 G MG MG . A MG 505 1_555 V O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc17 B OD1 ASP 38 B ASP 38 1_555 S MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc18 B O THR 40 B THR 40 1_555 S MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc19 B OG1 THR 40 B THR 40 1_555 S MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc20 B O PRO 41 B PRO 41 1_555 S MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc21 B OE1 GLU 67 B GLU 67 1_555 T MG MG . B MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc22 B OE2 GLU 68 B GLU 68 1_555 S MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc23 B OD1 ASP 82 B ASP 82 1_555 T MG MG . B MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc24 B OD2 ASP 82 B ASP 82 1_555 U MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc25 B O LEU 84 B LEU 84 1_555 T MG MG . B MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc26 B OD1 ASP 85 B ASP 85 1_555 U MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc27 B OD1 ASP 200 B ASP 200 1_555 U MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc28 P O4 SO4 . B SO4 305 1_555 T MG MG . B MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc29 P O3 SO4 . B SO4 305 1_555 U MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc30 P O4 SO4 . B SO4 305 1_555 U MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc31 Q O2 SO4 . B SO4 306 1_555 S MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc32 Q O3 SO4 . B SO4 306 1_555 T MG MG . B MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc33 T MG MG . B MG 309 1_555 W O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 6B64 _atom_sites.fract_transf_matrix[1][1] 0.011169 _atom_sites.fract_transf_matrix[1][2] 0.006449 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ASP A 1 501 501 ASP ASP . D 2 ASP A 1 502 506 ASP ASP . E 3 SO4 A 1 503 901 SO4 SO4 . F 3 SO4 A 1 504 902 SO4 SO4 . G 4 MG A 1 505 903 MG MG . H 4 MG A 1 506 904 MG MG . I 4 MG A 1 507 905 MG MG . J 2 ASP A 1 508 502 ASP ASP . K 2 ASP A 1 509 505 ASP ASP . L 2 ASP B 1 301 502 ASP ASP . M 2 ASP B 1 302 505 ASP ASP . N 2 ASP B 1 303 501 ASP ASP . O 2 ASP B 1 304 506 ASP ASP . P 3 SO4 B 1 305 901 SO4 SO4 . Q 3 SO4 B 1 306 902 SO4 SO4 . R 3 SO4 B 1 307 903 SO4 SO4 . S 4 MG B 1 308 904 MG MG . T 4 MG B 1 309 905 MG MG . U 4 MG B 1 310 906 MG MG . V 5 HOH A 1 601 63 HOH HOH . V 5 HOH A 2 602 66 HOH HOH . V 5 HOH A 3 603 74 HOH HOH . V 5 HOH A 4 604 52 HOH HOH . V 5 HOH A 5 605 19 HOH HOH . V 5 HOH A 6 606 49 HOH HOH . V 5 HOH A 7 607 16 HOH HOH . V 5 HOH A 8 608 8 HOH HOH . V 5 HOH A 9 609 17 HOH HOH . V 5 HOH A 10 610 72 HOH HOH . V 5 HOH A 11 611 1 HOH HOH . V 5 HOH A 12 612 61 HOH HOH . V 5 HOH A 13 613 40 HOH HOH . V 5 HOH A 14 614 44 HOH HOH . V 5 HOH A 15 615 43 HOH HOH . V 5 HOH A 16 616 47 HOH HOH . V 5 HOH A 17 617 20 HOH HOH . V 5 HOH A 18 618 82 HOH HOH . V 5 HOH A 19 619 5 HOH HOH . V 5 HOH A 20 620 15 HOH HOH . V 5 HOH A 21 621 53 HOH HOH . V 5 HOH A 22 622 81 HOH HOH . V 5 HOH A 23 623 58 HOH HOH . V 5 HOH A 24 624 71 HOH HOH . V 5 HOH A 25 625 79 HOH HOH . V 5 HOH A 26 626 32 HOH HOH . V 5 HOH A 27 627 13 HOH HOH . V 5 HOH A 28 628 2 HOH HOH . V 5 HOH A 29 629 7 HOH HOH . V 5 HOH A 30 630 10 HOH HOH . V 5 HOH A 31 631 55 HOH HOH . V 5 HOH A 32 632 21 HOH HOH . V 5 HOH A 33 633 14 HOH HOH . V 5 HOH A 34 634 70 HOH HOH . V 5 HOH A 35 635 9 HOH HOH . V 5 HOH A 36 636 18 HOH HOH . V 5 HOH A 37 637 69 HOH HOH . V 5 HOH A 38 638 12 HOH HOH . V 5 HOH A 39 639 85 HOH HOH . V 5 HOH A 40 640 11 HOH HOH . V 5 HOH A 41 641 4 HOH HOH . V 5 HOH A 42 642 24 HOH HOH . W 5 HOH B 1 401 65 HOH HOH . W 5 HOH B 2 402 67 HOH HOH . W 5 HOH B 3 403 90 HOH HOH . W 5 HOH B 4 404 83 HOH HOH . W 5 HOH B 5 405 78 HOH HOH . W 5 HOH B 6 406 38 HOH HOH . W 5 HOH B 7 407 42 HOH HOH . W 5 HOH B 8 408 50 HOH HOH . W 5 HOH B 9 409 84 HOH HOH . W 5 HOH B 10 410 59 HOH HOH . W 5 HOH B 11 411 41 HOH HOH . W 5 HOH B 12 412 76 HOH HOH . W 5 HOH B 13 413 87 HOH HOH . W 5 HOH B 14 414 48 HOH HOH . W 5 HOH B 15 415 92 HOH HOH . W 5 HOH B 16 416 46 HOH HOH . W 5 HOH B 17 417 91 HOH HOH . W 5 HOH B 18 418 26 HOH HOH . W 5 HOH B 19 419 36 HOH HOH . W 5 HOH B 20 420 28 HOH HOH . W 5 HOH B 21 421 27 HOH HOH . W 5 HOH B 22 422 77 HOH HOH . W 5 HOH B 23 423 45 HOH HOH . W 5 HOH B 24 424 73 HOH HOH . W 5 HOH B 25 425 6 HOH HOH . W 5 HOH B 26 426 31 HOH HOH . W 5 HOH B 27 427 88 HOH HOH . W 5 HOH B 28 428 51 HOH HOH . W 5 HOH B 29 429 86 HOH HOH . W 5 HOH B 30 430 22 HOH HOH . W 5 HOH B 31 431 25 HOH HOH . W 5 HOH B 32 432 37 HOH HOH . W 5 HOH B 33 433 35 HOH HOH . W 5 HOH B 34 434 75 HOH HOH . W 5 HOH B 35 435 34 HOH HOH . W 5 HOH B 36 436 33 HOH HOH . W 5 HOH B 37 437 39 HOH HOH . W 5 HOH B 38 438 54 HOH HOH . W 5 HOH B 39 439 30 HOH HOH . W 5 HOH B 40 440 3 HOH HOH . W 5 HOH B 41 441 23 HOH HOH . W 5 HOH B 42 442 89 HOH HOH . W 5 HOH B 43 443 80 HOH HOH . W 5 HOH B 44 444 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . C 2 22.843 -33.847 -7.997 1 43.52 ? N ASP 501 A 1 HETATM 2 C CA ASP . . . C 2 22.877 -35.305 -7.941 1 43.56 ? CA ASP 501 A 1 HETATM 3 C C ASP . . . C 2 22.029 -35.914 -9.054 1 63.48 ? C ASP 501 A 1 HETATM 4 O O ASP . . . C 2 21.717 -35.235 -10.033 1 63.29 ? O ASP 501 A 1 HETATM 5 C CB ASP . . . C 2 22.395 -35.796 -6.572 1 61.86 ? CB ASP 501 A 1 HETATM 6 C CG ASP . . . C 2 23.396 -35.501 -5.472 1 39.19 ? CG ASP 501 A 1 HETATM 7 O OD1 ASP . . . C 2 24.546 -35.189 -5.822 1 44.77 ? OD1 ASP 501 A 1 HETATM 8 O OD2 ASP . . . C 2 23.04 -35.576 -4.274 1 54.12 ? OD2 ASP 501 A 1 HETATM 9 O OXT ASP . . . C 2 21.638 -37.083 -9.003 1 58.41 ? OXT ASP 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #