data_6B6E # _model_server_result.job_id k_dzCRuxq-WvrdigiVRo5Q _model_server_result.datetime_utc '2024-11-05 16:48:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6B6E # _exptl.entry_id 6B6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.445 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(1S)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-hydroxyethyl]-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.94 _cell.angle_gamma 90 _cell.entry_id 6B6E _cell.length_a 39.64 _cell.length_b 41.74 _cell.length_c 69.52 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H17 N5 O5 S2' _chem_comp.formula_weight 399.445 _chem_comp.id FZS _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(1S)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-hydroxyethyl]-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Ceftriaxone open, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL CAX FZS sing 140 n n CAL SAT FZS sing 141 n n CAK CAX FZS doub 142 n n CAX CBA FZS sing 143 n n SAT CB FZS sing 144 n n CB NBI FZS sing 145 n n CB CA FZS sing 146 n n OAE CAW FZS doub 147 n n NBI CBA FZS doub 148 n n CBA CAV FZS sing 149 n n OAD CAV FZS doub 150 n n CAW N FZS sing 151 n n CAW CAZ FZS sing 152 n n CA N FZS sing 153 n n CA C FZS sing 154 n n CAV OAI FZS sing 155 n n C O1 FZS sing 156 n n OAR CAA FZS sing 157 n n OAR NAM FZS sing 158 n n CAZ NAM FZS doub 159 z n CAZ CBC FZS sing 160 n n CAJ CBC FZS doub 161 n y CAJ SAU FZS sing 162 n y CBC NAN FZS sing 163 n y SAU CBB FZS sing 164 n y NAN CBB FZS doub 165 n y CBB NAC FZS sing 166 n n O1 H1 FZS sing 167 n n N H2 FZS sing 168 n n CA H3 FZS sing 169 n n C H4 FZS sing 170 n n C H5 FZS sing 171 n n CB H6 FZS sing 172 n n CAA H7 FZS sing 173 n n CAA H8 FZS sing 174 n n CAA H9 FZS sing 175 n n CAJ H10 FZS sing 176 n n CAK H11 FZS sing 177 n n CAK H12 FZS sing 178 n n CAL H13 FZS sing 179 n n CAL H14 FZS sing 180 n n NAC H16 FZS sing 181 n n NAC H17 FZS sing 182 n n OAI H20 FZS sing 183 n n # _atom_sites.entry_id 6B6E _atom_sites.fract_transf_matrix[1][1] 0.025227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FZS A 1 301 1 FZS CFO . C 3 9F2 A 1 302 1 9F2 CEF . D 4 HOH A 1 401 167 HOH HOH . D 4 HOH A 2 402 73 HOH HOH . D 4 HOH A 3 403 61 HOH HOH . D 4 HOH A 4 404 170 HOH HOH . D 4 HOH A 5 405 69 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 56 HOH HOH . D 4 HOH A 8 408 149 HOH HOH . D 4 HOH A 9 409 39 HOH HOH . D 4 HOH A 10 410 55 HOH HOH . D 4 HOH A 11 411 113 HOH HOH . D 4 HOH A 12 412 71 HOH HOH . D 4 HOH A 13 413 111 HOH HOH . D 4 HOH A 14 414 89 HOH HOH . D 4 HOH A 15 415 11 HOH HOH . D 4 HOH A 16 416 58 HOH HOH . D 4 HOH A 17 417 23 HOH HOH . D 4 HOH A 18 418 14 HOH HOH . D 4 HOH A 19 419 57 HOH HOH . D 4 HOH A 20 420 54 HOH HOH . D 4 HOH A 21 421 33 HOH HOH . D 4 HOH A 22 422 121 HOH HOH . D 4 HOH A 23 423 19 HOH HOH . D 4 HOH A 24 424 105 HOH HOH . D 4 HOH A 25 425 20 HOH HOH . D 4 HOH A 26 426 90 HOH HOH . D 4 HOH A 27 427 64 HOH HOH . D 4 HOH A 28 428 3 HOH HOH . D 4 HOH A 29 429 12 HOH HOH . D 4 HOH A 30 430 129 HOH HOH . D 4 HOH A 31 431 2 HOH HOH . D 4 HOH A 32 432 8 HOH HOH . D 4 HOH A 33 433 26 HOH HOH . D 4 HOH A 34 434 24 HOH HOH . D 4 HOH A 35 435 157 HOH HOH . D 4 HOH A 36 436 114 HOH HOH . D 4 HOH A 37 437 123 HOH HOH . D 4 HOH A 38 438 60 HOH HOH . D 4 HOH A 39 439 164 HOH HOH . D 4 HOH A 40 440 36 HOH HOH . D 4 HOH A 41 441 155 HOH HOH . D 4 HOH A 42 442 87 HOH HOH . D 4 HOH A 43 443 74 HOH HOH . D 4 HOH A 44 444 52 HOH HOH . D 4 HOH A 45 445 86 HOH HOH . D 4 HOH A 46 446 4 HOH HOH . D 4 HOH A 47 447 17 HOH HOH . D 4 HOH A 48 448 142 HOH HOH . D 4 HOH A 49 449 41 HOH HOH . D 4 HOH A 50 450 1 HOH HOH . D 4 HOH A 51 451 147 HOH HOH . D 4 HOH A 52 452 48 HOH HOH . D 4 HOH A 53 453 9 HOH HOH . D 4 HOH A 54 454 127 HOH HOH . D 4 HOH A 55 455 93 HOH HOH . D 4 HOH A 56 456 82 HOH HOH . D 4 HOH A 57 457 27 HOH HOH . D 4 HOH A 58 458 81 HOH HOH . D 4 HOH A 59 459 18 HOH HOH . D 4 HOH A 60 460 112 HOH HOH . D 4 HOH A 61 461 85 HOH HOH . D 4 HOH A 62 462 68 HOH HOH . D 4 HOH A 63 463 13 HOH HOH . D 4 HOH A 64 464 38 HOH HOH . D 4 HOH A 65 465 51 HOH HOH . D 4 HOH A 66 466 99 HOH HOH . D 4 HOH A 67 467 96 HOH HOH . D 4 HOH A 68 468 40 HOH HOH . D 4 HOH A 69 469 62 HOH HOH . D 4 HOH A 70 470 46 HOH HOH . D 4 HOH A 71 471 21 HOH HOH . D 4 HOH A 72 472 83 HOH HOH . D 4 HOH A 73 473 72 HOH HOH . D 4 HOH A 74 474 66 HOH HOH . D 4 HOH A 75 475 145 HOH HOH . D 4 HOH A 76 476 31 HOH HOH . D 4 HOH A 77 477 101 HOH HOH . D 4 HOH A 78 478 44 HOH HOH . D 4 HOH A 79 479 100 HOH HOH . D 4 HOH A 80 480 125 HOH HOH . D 4 HOH A 81 481 135 HOH HOH . D 4 HOH A 82 482 97 HOH HOH . D 4 HOH A 83 483 98 HOH HOH . D 4 HOH A 84 484 102 HOH HOH . D 4 HOH A 85 485 45 HOH HOH . D 4 HOH A 86 486 35 HOH HOH . D 4 HOH A 87 487 124 HOH HOH . D 4 HOH A 88 488 169 HOH HOH . D 4 HOH A 89 489 70 HOH HOH . D 4 HOH A 90 490 128 HOH HOH . D 4 HOH A 91 491 140 HOH HOH . D 4 HOH A 92 492 28 HOH HOH . D 4 HOH A 93 493 5 HOH HOH . D 4 HOH A 94 494 29 HOH HOH . D 4 HOH A 95 495 116 HOH HOH . D 4 HOH A 96 496 43 HOH HOH . D 4 HOH A 97 497 143 HOH HOH . D 4 HOH A 98 498 159 HOH HOH . D 4 HOH A 99 499 91 HOH HOH . D 4 HOH A 100 500 88 HOH HOH . D 4 HOH A 101 501 25 HOH HOH . D 4 HOH A 102 502 79 HOH HOH . D 4 HOH A 103 503 139 HOH HOH . D 4 HOH A 104 504 104 HOH HOH . D 4 HOH A 105 505 65 HOH HOH . D 4 HOH A 106 506 75 HOH HOH . D 4 HOH A 107 507 95 HOH HOH . D 4 HOH A 108 508 122 HOH HOH . D 4 HOH A 109 509 162 HOH HOH . D 4 HOH A 110 510 80 HOH HOH . D 4 HOH A 111 511 47 HOH HOH . D 4 HOH A 112 512 141 HOH HOH . D 4 HOH A 113 513 103 HOH HOH . D 4 HOH A 114 514 163 HOH HOH . D 4 HOH A 115 515 84 HOH HOH . D 4 HOH A 116 516 16 HOH HOH . D 4 HOH A 117 517 146 HOH HOH . D 4 HOH A 118 518 110 HOH HOH . D 4 HOH A 119 519 106 HOH HOH . D 4 HOH A 120 520 77 HOH HOH . D 4 HOH A 121 521 151 HOH HOH . D 4 HOH A 122 522 126 HOH HOH . D 4 HOH A 123 523 7 HOH HOH . D 4 HOH A 124 524 92 HOH HOH . D 4 HOH A 125 525 172 HOH HOH . D 4 HOH A 126 526 158 HOH HOH . D 4 HOH A 127 527 109 HOH HOH . D 4 HOH A 128 528 115 HOH HOH . D 4 HOH A 129 529 94 HOH HOH . D 4 HOH A 130 530 118 HOH HOH . D 4 HOH A 131 531 32 HOH HOH . D 4 HOH A 132 532 78 HOH HOH . D 4 HOH A 133 533 42 HOH HOH . D 4 HOH A 134 534 156 HOH HOH . D 4 HOH A 135 535 108 HOH HOH . D 4 HOH A 136 536 37 HOH HOH . D 4 HOH A 137 537 153 HOH HOH . D 4 HOH A 138 538 152 HOH HOH . D 4 HOH A 139 539 10 HOH HOH . D 4 HOH A 140 540 165 HOH HOH . D 4 HOH A 141 541 168 HOH HOH . D 4 HOH A 142 542 15 HOH HOH . D 4 HOH A 143 543 138 HOH HOH . D 4 HOH A 144 544 49 HOH HOH . D 4 HOH A 145 545 130 HOH HOH . D 4 HOH A 146 546 154 HOH HOH . D 4 HOH A 147 547 117 HOH HOH . D 4 HOH A 148 548 119 HOH HOH . D 4 HOH A 149 549 67 HOH HOH . D 4 HOH A 150 550 166 HOH HOH . D 4 HOH A 151 551 160 HOH HOH . D 4 HOH A 152 552 107 HOH HOH . D 4 HOH A 153 553 34 HOH HOH . D 4 HOH A 154 554 161 HOH HOH . D 4 HOH A 155 555 22 HOH HOH . D 4 HOH A 156 556 132 HOH HOH . D 4 HOH A 157 557 50 HOH HOH . D 4 HOH A 158 558 134 HOH HOH . D 4 HOH A 159 559 133 HOH HOH . D 4 HOH A 160 560 137 HOH HOH . D 4 HOH A 161 561 120 HOH HOH . D 4 HOH A 162 562 173 HOH HOH . D 4 HOH A 163 563 63 HOH HOH . D 4 HOH A 164 564 30 HOH HOH . D 4 HOH A 165 565 144 HOH HOH . D 4 HOH A 166 566 148 HOH HOH . D 4 HOH A 167 567 59 HOH HOH . D 4 HOH A 168 568 136 HOH HOH . D 4 HOH A 169 569 131 HOH HOH . D 4 HOH A 170 570 53 HOH HOH . D 4 HOH A 171 571 150 HOH HOH . D 4 HOH A 172 572 171 HOH HOH . D 4 HOH A 173 573 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 FZS . B . B 2 -3.52 -15.252 -11.478 0.41 8.01 ? O1 FZS 301 A 1 HETATM 2 N N FZS . B . B 2 -3.504 -17.897 -9.953 0.41 9.73 ? N FZS 301 A 1 HETATM 3 C CA FZS . B . B 2 -4.058 -17.5 -11.246 0.41 9.05 ? CA FZS 301 A 1 HETATM 4 C C FZS . B . B 2 -3.229 -16.405 -11.857 0.41 8.08 ? C FZS 301 A 1 HETATM 5 C CB FZS . B . B 2 -4.285 -18.622 -12.295 0.41 9.29 ? CB FZS 301 A 1 HETATM 6 C CAA FZS . B . B 2 -1.698 -20.215 -5.747 0.41 8.67 ? CAA FZS 301 A 1 HETATM 7 C CAJ FZS . B . B 2 -6.568 -18.606 -8.796 0.41 8.6 ? CAJ FZS 301 A 1 HETATM 8 C CAK FZS . B . B 2 -7.985 -17.843 -14.425 0.41 10.53 ? CAK FZS 301 A 1 HETATM 9 C CAL FZS . B . B 2 -6.839 -19.613 -13.205 0.41 11.68 ? CAL FZS 301 A 1 HETATM 10 C CAV FZS . B . B 2 -5.76 -15.845 -14.085 0.41 9.08 ? CAV FZS 301 A 1 HETATM 11 C CAW FZS . B . B 2 -3.455 -19.11 -9.401 0.41 9.2 ? CAW FZS 301 A 1 HETATM 12 C CAX FZS . B . B 2 -6.884 -18.252 -13.828 0.41 10.62 ? CAX FZS 301 A 1 HETATM 13 C CAZ FZS . B . B 2 -4.169 -19.328 -8.032 0.41 8.61 ? CAZ FZS 301 A 1 HETATM 14 C CBA FZS . B . B 2 -5.676 -17.363 -13.781 0.41 9.36 ? CBA FZS 301 A 1 HETATM 15 C CBB FZS . B . B 2 -7.572 -19.023 -6.559 0.41 8.84 ? CBB FZS 301 A 1 HETATM 16 C CBC FZS . B . B 2 -5.681 -19.072 -7.807 0.41 7.93 ? CBC FZS 301 A 1 HETATM 17 N NAC FZS . B . B 2 -8.365 -19.163 -5.469 0.41 8.96 ? NAC FZS 301 A 1 HETATM 18 N NAM FZS . B . B 2 -3.52 -19.726 -7.028 0.41 7.69 ? NAM FZS 301 A 1 HETATM 19 N NAN FZS . B . B 2 -6.252 -19.296 -6.574 0.41 8.68 ? NAN FZS 301 A 1 HETATM 20 N NBI FZS . B . B 2 -4.55 -17.863 -13.509 0.41 9.68 ? NBI FZS 301 A 1 HETATM 21 O OAD FZS . B . B 2 -5.032 -15.361 -14.976 0.41 10.61 ? OAD FZS 301 A 1 HETATM 22 O OAE FZS . B . B 2 -2.841 -20.03 -9.916 0.41 9.23 ? OAE FZS 301 A 1 HETATM 23 O OAI FZS . B . B 2 -6.56 -15.136 -13.438 0.41 8.29 ? OAI FZS 301 A 1 HETATM 24 O OAR FZS . B . B 2 -2.297 -19.981 -7.02 0.41 9.94 ? OAR FZS 301 A 1 HETATM 25 S SAT FZS . B . B 2 -5.706 -19.568 -11.86 0.41 8.76 ? SAT FZS 301 A 1 HETATM 26 S SAU FZS . B . B 2 -8.141 -18.476 -8.079 0.41 12.14 ? SAU FZS 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #