data_6B6F # _model_server_result.job_id rzK48btDI_zcI3g8NoeFPQ _model_server_result.datetime_utc '2024-11-05 16:39:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6B6F # _exptl.entry_id 6B6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 554.58 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ceftriaxone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.68 _cell.angle_gamma 90 _cell.entry_id 6B6F _cell.length_a 39.73 _cell.length_b 41.69 _cell.length_c 69.53 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H18 N8 O7 S3' _chem_comp.formula_weight 554.58 _chem_comp.id 9F2 _chem_comp.mon_nstd_flag . _chem_comp.name Ceftriaxone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C17 9F2 sing 1 n n C17 N8 9F2 doub 2 n y C17 S3 9F2 sing 3 n y N8 C15 9F2 sing 4 n y S3 C16 9F2 sing 5 n y C15 C16 9F2 doub 6 n y C15 C13 9F2 sing 7 n n N5 C11 9F2 sing 8 n n N5 C12 9F2 sing 9 n n O3 C10 9F2 doub 10 n n C14 O5 9F2 sing 11 n n C13 N6 9F2 doub 12 e n C13 C12 9F2 sing 13 n n C11 C10 9F2 sing 14 n n C11 C1 9F2 sing 15 n n N6 O5 9F2 sing 16 n n C12 O4 9F2 doub 17 n n C10 N4 9F2 sing 18 n n O6 C18 9F2 doub 19 n n C1 N4 9F2 sing 20 n n C1 S1 9F2 sing 21 n n N4 C9 9F2 sing 22 n n C18 C9 9F2 sing 23 n n C18 O7 9F2 sing 24 n n C9 C3 9F2 doub 25 n n S1 C2 9F2 sing 26 n n C3 C2 9F2 sing 27 n n C3 C4 9F2 sing 28 n n C4 S2 9F2 sing 29 n n S2 C5 9F2 sing 30 n n C5 N1 9F2 doub 31 n n C5 N3 9F2 sing 32 n n N1 C6 9F2 sing 33 n n C8 N3 9F2 sing 34 n n N3 N2 9F2 sing 35 n n C6 O1 9F2 doub 36 n n C6 C7 9F2 sing 37 n n N2 C7 9F2 sing 38 n n C7 O2 9F2 doub 39 n n C1 H1 9F2 sing 40 n n C2 H2 9F2 sing 41 n n C2 H3 9F2 sing 42 n n C4 H5 9F2 sing 43 n n C4 H6 9F2 sing 44 n n N2 H7 9F2 sing 45 n n C8 H8 9F2 sing 46 n n C8 H9 9F2 sing 47 n n C8 H10 9F2 sing 48 n n C11 H12 9F2 sing 49 n n N5 H13 9F2 sing 50 n n C14 H14 9F2 sing 51 n n C14 H15 9F2 sing 52 n n C14 H16 9F2 sing 53 n n C16 H18 9F2 sing 54 n n N7 H21 9F2 sing 55 n n N7 H22 9F2 sing 56 n n O7 H26 9F2 sing 57 n n # _atom_sites.entry_id 6B6F _atom_sites.fract_transf_matrix[1][1] 0.02517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006594 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9F2 A 1 301 1 9F2 CEF . C 3 HOH A 1 401 61 HOH HOH . C 3 HOH A 2 402 158 HOH HOH . C 3 HOH A 3 403 45 HOH HOH . C 3 HOH A 4 404 165 HOH HOH . C 3 HOH A 5 405 59 HOH HOH . C 3 HOH A 6 406 172 HOH HOH . C 3 HOH A 7 407 153 HOH HOH . C 3 HOH A 8 408 30 HOH HOH . C 3 HOH A 9 409 109 HOH HOH . C 3 HOH A 10 410 136 HOH HOH . C 3 HOH A 11 411 68 HOH HOH . C 3 HOH A 12 412 121 HOH HOH . C 3 HOH A 13 413 95 HOH HOH . C 3 HOH A 14 414 62 HOH HOH . C 3 HOH A 15 415 141 HOH HOH . C 3 HOH A 16 416 84 HOH HOH . C 3 HOH A 17 417 71 HOH HOH . C 3 HOH A 18 418 56 HOH HOH . C 3 HOH A 19 419 114 HOH HOH . C 3 HOH A 20 420 33 HOH HOH . C 3 HOH A 21 421 31 HOH HOH . C 3 HOH A 22 422 37 HOH HOH . C 3 HOH A 23 423 66 HOH HOH . C 3 HOH A 24 424 139 HOH HOH . C 3 HOH A 25 425 3 HOH HOH . C 3 HOH A 26 426 113 HOH HOH . C 3 HOH A 27 427 123 HOH HOH . C 3 HOH A 28 428 21 HOH HOH . C 3 HOH A 29 429 124 HOH HOH . C 3 HOH A 30 430 81 HOH HOH . C 3 HOH A 31 431 107 HOH HOH . C 3 HOH A 32 432 97 HOH HOH . C 3 HOH A 33 433 115 HOH HOH . C 3 HOH A 34 434 63 HOH HOH . C 3 HOH A 35 435 2 HOH HOH . C 3 HOH A 36 436 13 HOH HOH . C 3 HOH A 37 437 1 HOH HOH . C 3 HOH A 38 438 92 HOH HOH . C 3 HOH A 39 439 128 HOH HOH . C 3 HOH A 40 440 116 HOH HOH . C 3 HOH A 41 441 10 HOH HOH . C 3 HOH A 42 442 164 HOH HOH . C 3 HOH A 43 443 57 HOH HOH . C 3 HOH A 44 444 25 HOH HOH . C 3 HOH A 45 445 163 HOH HOH . C 3 HOH A 46 446 125 HOH HOH . C 3 HOH A 47 447 160 HOH HOH . C 3 HOH A 48 448 85 HOH HOH . C 3 HOH A 49 449 119 HOH HOH . C 3 HOH A 50 450 35 HOH HOH . C 3 HOH A 51 451 157 HOH HOH . C 3 HOH A 52 452 34 HOH HOH . C 3 HOH A 53 453 161 HOH HOH . C 3 HOH A 54 454 86 HOH HOH . C 3 HOH A 55 455 49 HOH HOH . C 3 HOH A 56 456 175 HOH HOH . C 3 HOH A 57 457 9 HOH HOH . C 3 HOH A 58 458 40 HOH HOH . C 3 HOH A 59 459 32 HOH HOH . C 3 HOH A 60 460 16 HOH HOH . C 3 HOH A 61 461 73 HOH HOH . C 3 HOH A 62 462 22 HOH HOH . C 3 HOH A 63 463 4 HOH HOH . C 3 HOH A 64 464 169 HOH HOH . C 3 HOH A 65 465 100 HOH HOH . C 3 HOH A 66 466 146 HOH HOH . C 3 HOH A 67 467 27 HOH HOH . C 3 HOH A 68 468 137 HOH HOH . C 3 HOH A 69 469 18 HOH HOH . C 3 HOH A 70 470 104 HOH HOH . C 3 HOH A 71 471 38 HOH HOH . C 3 HOH A 72 472 11 HOH HOH . C 3 HOH A 73 473 53 HOH HOH . C 3 HOH A 74 474 28 HOH HOH . C 3 HOH A 75 475 132 HOH HOH . C 3 HOH A 76 476 12 HOH HOH . C 3 HOH A 77 477 50 HOH HOH . C 3 HOH A 78 478 67 HOH HOH . C 3 HOH A 79 479 20 HOH HOH . C 3 HOH A 80 480 162 HOH HOH . C 3 HOH A 81 481 89 HOH HOH . C 3 HOH A 82 482 17 HOH HOH . C 3 HOH A 83 483 105 HOH HOH . C 3 HOH A 84 484 46 HOH HOH . C 3 HOH A 85 485 120 HOH HOH . C 3 HOH A 86 486 99 HOH HOH . C 3 HOH A 87 487 106 HOH HOH . C 3 HOH A 88 488 133 HOH HOH . C 3 HOH A 89 489 108 HOH HOH . C 3 HOH A 90 490 156 HOH HOH . C 3 HOH A 91 491 51 HOH HOH . C 3 HOH A 92 492 54 HOH HOH . C 3 HOH A 93 493 19 HOH HOH . C 3 HOH A 94 494 74 HOH HOH . C 3 HOH A 95 495 26 HOH HOH . C 3 HOH A 96 496 138 HOH HOH . C 3 HOH A 97 497 58 HOH HOH . C 3 HOH A 98 498 145 HOH HOH . C 3 HOH A 99 499 88 HOH HOH . C 3 HOH A 100 500 41 HOH HOH . C 3 HOH A 101 501 5 HOH HOH . C 3 HOH A 102 502 69 HOH HOH . C 3 HOH A 103 503 52 HOH HOH . C 3 HOH A 104 504 39 HOH HOH . C 3 HOH A 105 505 90 HOH HOH . C 3 HOH A 106 506 82 HOH HOH . C 3 HOH A 107 507 126 HOH HOH . C 3 HOH A 108 508 43 HOH HOH . C 3 HOH A 109 509 94 HOH HOH . C 3 HOH A 110 510 170 HOH HOH . C 3 HOH A 111 511 93 HOH HOH . C 3 HOH A 112 512 36 HOH HOH . C 3 HOH A 113 513 44 HOH HOH . C 3 HOH A 114 514 78 HOH HOH . C 3 HOH A 115 515 166 HOH HOH . C 3 HOH A 116 516 8 HOH HOH . C 3 HOH A 117 517 75 HOH HOH . C 3 HOH A 118 518 122 HOH HOH . C 3 HOH A 119 519 112 HOH HOH . C 3 HOH A 120 520 151 HOH HOH . C 3 HOH A 121 521 98 HOH HOH . C 3 HOH A 122 522 168 HOH HOH . C 3 HOH A 123 523 150 HOH HOH . C 3 HOH A 124 524 14 HOH HOH . C 3 HOH A 125 525 77 HOH HOH . C 3 HOH A 126 526 167 HOH HOH . C 3 HOH A 127 527 6 HOH HOH . C 3 HOH A 128 528 149 HOH HOH . C 3 HOH A 129 529 159 HOH HOH . C 3 HOH A 130 530 144 HOH HOH . C 3 HOH A 131 531 72 HOH HOH . C 3 HOH A 132 532 111 HOH HOH . C 3 HOH A 133 533 129 HOH HOH . C 3 HOH A 134 534 65 HOH HOH . C 3 HOH A 135 535 42 HOH HOH . C 3 HOH A 136 536 7 HOH HOH . C 3 HOH A 137 537 143 HOH HOH . C 3 HOH A 138 538 142 HOH HOH . C 3 HOH A 139 539 147 HOH HOH . C 3 HOH A 140 540 48 HOH HOH . C 3 HOH A 141 541 76 HOH HOH . C 3 HOH A 142 542 47 HOH HOH . C 3 HOH A 143 543 29 HOH HOH . C 3 HOH A 144 544 15 HOH HOH . C 3 HOH A 145 545 171 HOH HOH . C 3 HOH A 146 546 23 HOH HOH . C 3 HOH A 147 547 24 HOH HOH . C 3 HOH A 148 548 131 HOH HOH . C 3 HOH A 149 549 79 HOH HOH . C 3 HOH A 150 550 118 HOH HOH . C 3 HOH A 151 551 173 HOH HOH . C 3 HOH A 152 552 60 HOH HOH . C 3 HOH A 153 553 80 HOH HOH . C 3 HOH A 154 554 101 HOH HOH . C 3 HOH A 155 555 174 HOH HOH . C 3 HOH A 156 556 155 HOH HOH . C 3 HOH A 157 557 130 HOH HOH . C 3 HOH A 158 558 102 HOH HOH . C 3 HOH A 159 559 87 HOH HOH . C 3 HOH A 160 560 152 HOH HOH . C 3 HOH A 161 561 96 HOH HOH . C 3 HOH A 162 562 64 HOH HOH . C 3 HOH A 163 563 55 HOH HOH . C 3 HOH A 164 564 135 HOH HOH . C 3 HOH A 165 565 127 HOH HOH . C 3 HOH A 166 566 83 HOH HOH . C 3 HOH A 167 567 117 HOH HOH . C 3 HOH A 168 568 91 HOH HOH . C 3 HOH A 169 569 140 HOH HOH . C 3 HOH A 170 570 134 HOH HOH . C 3 HOH A 171 571 148 HOH HOH . C 3 HOH A 172 572 110 HOH HOH . C 3 HOH A 173 573 103 HOH HOH . C 3 HOH A 174 574 70 HOH HOH . C 3 HOH A 175 575 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9F2 . A . B 2 -4.173 -18.692 -12.323 0.65 18.12 ? C1 9F2 301 A 1 HETATM 2 S S1 9F2 . A . B 2 -5.705 -19.483 -11.999 0.65 18.82 ? S1 9F2 301 A 1 HETATM 3 C C2 9F2 . A . B 2 -6.364 -19.532 -13.622 0.65 19.72 ? C2 9F2 301 A 1 HETATM 4 C C3 9F2 . A . B 2 -6.253 -18.161 -14.265 0.65 19.44 ? C3 9F2 301 A 1 HETATM 5 C C4 9F2 . A . B 2 -7.081 -17.893 -15.487 0.65 20.66 ? C4 9F2 301 A 1 HETATM 6 S S2 9F2 . A . B 2 -8.649 -17.509 -14.793 0.65 21.88 ? S2 9F2 301 A 1 HETATM 7 C C5 9F2 . A . B 2 -9.781 -18.662 -15.3 0.65 24.41 ? C5 9F2 301 A 1 HETATM 8 N N1 9F2 . A . B 2 -10.192 -18.679 -16.582 0.65 24.78 ? N1 9F2 301 A 1 HETATM 9 C C6 9F2 . A . B 2 -11.101 -19.598 -16.992 0.65 25.92 ? C6 9F2 301 A 1 HETATM 10 O O1 9F2 . A . B 2 -11.478 -19.603 -18.183 0.65 25.67 ? O1 9F2 301 A 1 HETATM 11 C C7 9F2 . A . B 2 -11.61 -20.539 -16.105 0.65 26.19 ? C7 9F2 301 A 1 HETATM 12 O O2 9F2 . A . B 2 -12.446 -21.383 -16.494 0.65 26.51 ? O2 9F2 301 A 1 HETATM 13 N N2 9F2 . A . B 2 -11.215 -20.554 -14.83 0.65 25.59 ? N2 9F2 301 A 1 HETATM 14 N N3 9F2 . A . B 2 -10.286 -19.612 -14.389 0.65 25.25 ? N3 9F2 301 A 1 HETATM 15 C C8 9F2 . A . B 2 -9.85 -19.619 -12.985 0.65 24.47 ? C8 9F2 301 A 1 HETATM 16 C C9 9F2 . A . B 2 -5.528 -17.16 -13.763 0.65 18.08 ? C9 9F2 301 A 1 HETATM 17 N N4 9F2 . A . B 2 -4.682 -17.401 -12.782 0.65 17.87 ? N4 9F2 301 A 1 HETATM 18 C C10 9F2 . A . B 2 -4.177 -16.595 -11.866 0.65 17.51 ? C10 9F2 301 A 1 HETATM 19 O O3 9F2 . A . B 2 -4.167 -15.403 -11.612 0.65 16.73 ? O3 9F2 301 A 1 HETATM 20 C C11 9F2 . A . B 2 -3.629 -17.8 -11.21 0.65 17.49 ? C11 9F2 301 A 1 HETATM 21 N N5 9F2 . A . B 2 -3.955 -18.106 -9.835 0.65 16.95 ? N5 9F2 301 A 1 HETATM 22 C C12 9F2 . A . B 2 -3.706 -19.267 -9.245 0.65 16.99 ? C12 9F2 301 A 1 HETATM 23 O O4 9F2 . A . B 2 -3.072 -20.15 -9.801 0.65 17.39 ? O4 9F2 301 A 1 HETATM 24 C C13 9F2 . A . B 2 -4.235 -19.438 -7.885 0.65 16.6 ? C13 9F2 301 A 1 HETATM 25 N N6 9F2 . A . B 2 -3.502 -19.818 -6.947 0.65 16.38 ? N6 9F2 301 A 1 HETATM 26 O O5 9F2 . A . B 2 -2.321 -20.129 -7.133 0.65 16.38 ? O5 9F2 301 A 1 HETATM 27 C C14 9F2 . A . B 2 -1.988 -21.476 -6.815 0.65 16.77 ? C14 9F2 301 A 1 HETATM 28 C C15 9F2 . A . B 2 -5.626 -19.121 -7.509 0.65 16.49 ? C15 9F2 301 A 1 HETATM 29 C C16 9F2 . A . B 2 -6.682 -19.051 -8.435 0.65 16.57 ? C16 9F2 301 A 1 HETATM 30 S S3 9F2 . A . B 2 -8.1 -18.684 -7.527 0.65 16.48 ? S3 9F2 301 A 1 HETATM 31 C C17 9F2 . A . B 2 -7.261 -18.642 -6.034 0.65 16.64 ? C17 9F2 301 A 1 HETATM 32 N N7 9F2 . A . B 2 -7.853 -18.381 -4.843 0.65 16.77 ? N7 9F2 301 A 1 HETATM 33 N N8 9F2 . A . B 2 -5.953 -18.904 -6.189 0.65 16.23 ? N8 9F2 301 A 1 HETATM 34 C C18 9F2 . A . B 2 -5.685 -15.79 -14.226 0.65 17.94 ? C18 9F2 301 A 1 HETATM 35 O O6 9F2 . A . B 2 -6.723 -15.16 -13.908 0.65 17.94 ? O6 9F2 301 A 1 HETATM 36 O O7 9F2 . A . B 2 -4.777 -15.296 -14.926 0.65 17.66 ? O7 9F2 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 36 #